HHsearch results for GI: 254780836 and protein with PDBid: 3m6w_A
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.85 E-value=0.0067 Score=37.00 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=86.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
|-||---..+-+.+.++ .|.++.+|+|-||+.||=-+...+.+. ....++..|+++.-..+
T Consensus 81 G~~yiQd~sS~l~~~~L----------~~~~g~~VLDlCAAPGGKt~~la~~l~---------~~g~l~and~~~~R~~~ 141 (464)
T 3m6w_A 81 GLYYIQEPSAQAVGVLL----------DPKPGERVLDLAAAPGGKTTHLAARMG---------GKGLLLANEVDGKRVRG 141 (464)
T ss_dssp TSEEECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHH
T ss_pred CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCCHHHHHHHHHH---------CCCEEEECCCCHHHHHH
T ss_conf 84999488999999972----------999999798836587655999998853---------58357622431788888
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCC--CCCC-CC
Q ss_conf 99998980887533456666823475457999866418999816856765--3100011123442266665--3577-77
Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGR--FGPG-LP 329 (674)
Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~R--f~~g-lP 329 (674)
.+.|+--.|.+.. |...|.-.-......+||.||..+|-+-+ |.++ .+.+ +... +-
T Consensus 142 l~~nl~r~g~~~~--------v~~~d~~~l~~~~~~~fD~ILvDaPCSG~G~~rk~-----------p~~~~~~~~~~~~ 202 (464)
T 3m6w_A 142 LLENVERWGAPLA--------VTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKD-----------REAARHWGPSAPK 202 (464)
T ss_dssp HHHHHHHHCCCCE--------EECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTC-----------TTSGGGCCTTHHH
T ss_pred HHHHHHHHCCCEE--------EEECCHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-----------CHHHHCCCHHHHH
T ss_conf 9888886188616--------87232243320466644379844876667632338-----------0242205877899
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 4770659999999996146657880799973897134776443268999999884946
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674)
.-+.-|.--|.+.+..|++ ||+++-.. -+++. .-+|..|+..|=++.-+
T Consensus 203 ~l~~~Q~~iL~~A~~~Lkp----GG~LVYST--CS~~~---eENE~vV~~~L~~~~~~ 251 (464)
T 3m6w_A 203 RMAEVQKALLAQASRLLGP----GGVLVYST--CTFAP---EENEGVVAHFLKAHPEF 251 (464)
T ss_dssp HHHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCG---GGTHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCH---HHHHHHHHHHHHHCCCC
T ss_conf 9999999999999987188----98899996--99986---87799999999869997