HHsearch results for GI: 254780836 and protein with PDBid: 3m6w_A

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.85  E-value=0.0067  Score=37.00  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      |-||---..+-+.+.++          .|.++.+|+|-||+.||=-+...+.+.         ....++..|+++.-..+
T Consensus        81 G~~yiQd~sS~l~~~~L----------~~~~g~~VLDlCAAPGGKt~~la~~l~---------~~g~l~and~~~~R~~~  141 (464)
T 3m6w_A           81 GLYYIQEPSAQAVGVLL----------DPKPGERVLDLAAAPGGKTTHLAARMG---------GKGLLLANEVDGKRVRG  141 (464)
T ss_dssp             TSEEECCTTTHHHHHHH----------CCCTTCEEEESSCTTCHHHHHHHHHTT---------TCSEEEEECSCHHHHHH
T ss_pred             CEEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCCHHHHHHHHHH---------CCCEEEECCCCHHHHHH
T ss_conf             84999488999999972----------999999798836587655999998853---------58357622431788888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCC--CCCC-CC
Q ss_conf             99998980887533456666823475457999866418999816856765--3100011123442266665--3577-77
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGR--FGPG-LP  329 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~R--f~~g-lP  329 (674)
                      .+.|+--.|.+..        |...|.-.-......+||.||..+|-+-+  |.++           .+.+  +... +-
T Consensus       142 l~~nl~r~g~~~~--------v~~~d~~~l~~~~~~~fD~ILvDaPCSG~G~~rk~-----------p~~~~~~~~~~~~  202 (464)
T 3m6w_A          142 LLENVERWGAPLA--------VTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKD-----------REAARHWGPSAPK  202 (464)
T ss_dssp             HHHHHHHHCCCCE--------EECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTC-----------TTSGGGCCTTHHH
T ss_pred             HHHHHHHHCCCEE--------EEECCHHHHHCCCCCCCCEEEECCCCCCCCCCCCC-----------CHHHHCCCHHHHH
T ss_conf             9888886188616--------87232243320466644379844876667632338-----------0242205877899


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             4770659999999996146657880799973897134776443268999999884946
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i  387 (674)
                      .-+.-|.--|.+.+..|++    ||+++-..  -+++.   .-+|..|+..|=++.-+
T Consensus       203 ~l~~~Q~~iL~~A~~~Lkp----GG~LVYST--CS~~~---eENE~vV~~~L~~~~~~  251 (464)
T 3m6w_A          203 RMAEVQKALLAQASRLLGP----GGVLVYST--CTFAP---EENEGVVAHFLKAHPEF  251 (464)
T ss_dssp             HHHHHHHHHHHHHHTTEEE----EEEEEEEE--SCCCG---GGTHHHHHHHHHHCTTE
T ss_pred             HHHHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCH---HHHHHHHHHHHHHCCCC
T ss_conf             9999999999999987188----98899996--99986---87799999999869997