HHsearch results for GI: 254780836 and protein with PDBid: 3mb5_A

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.08  E-value=4.8e-05  Score=50.95  Aligned_cols=122  Identities=12%  Similarity=0.087  Sum_probs=80.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf             75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r  175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV  254 (674)
Q Consensus       175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI  254 (674)
                      .|---|.++.-+ +.++          +..++..|.|-+||||++-......+.   +      ...+||.|++++...+
T Consensus        74 ~qiiyp~d~~~I-i~~l----------~i~pG~rVLd~G~GsG~lt~~lar~~~---~------~G~V~~~D~~~~~~~~  133 (255)
T 3mb5_A           74 PQIVHPKDAALI-VAYA----------GISPGDFIVEAGVGSGALTLFLANIVG---P------EGRVVSYEIREDFAKL  133 (255)
T ss_dssp             SCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC---T------TSEEEEECSCHHHHHH
T ss_pred             CCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CCEEEEECCCHHHHHH
T ss_conf             746588999999-9971----------989899899888662799999997438---8------9779983499999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             99998980887533456666823475457999866418999816856765310001112344226666535777747706
Q gi|254780836|r  255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
                      |+.|+-..|....      -.+..+|...  .+....||.|+.++|=  +|                             
T Consensus       134 A~~n~~~~gl~~~------v~~~~~D~~~--~~~~~~~D~V~ld~p~--p~-----------------------------  174 (255)
T 3mb5_A          134 AWENIKWAGFDDR------VTIKLKDIYE--GIEEENVDHVILDLPQ--PE-----------------------------  174 (255)
T ss_dssp             HHHHHHHHTCTTT------EEEECSCGGG--CCCCCSEEEEEECSSC--GG-----------------------------
T ss_pred             HHHHHHHCCCCEE------EEEEECCHHC--CCCCCCCCEEEEECCC--HH-----------------------------
T ss_conf             9999997199814------9999461103--5555656579996685--67-----------------------------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             599999999961466578807999738
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVLS  361 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~n  361 (674)
                        ..+-|+...|||    ||++++..|
T Consensus       175 --~~l~~~~~~Lkp----GG~lv~~~p  195 (255)
T 3mb5_A          175 --RVVEHAAKALKP----GGFFVAYTP  195 (255)
T ss_dssp             --GGHHHHHHHEEE----EEEEEEEES
T ss_pred             --HHHHHHHHHCCC----CCEEEEEEC
T ss_conf             --899999985689----988999939