HHsearch results for GI: 254780836 and protein with PDBid: 3mb5_A
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.08 E-value=4.8e-05 Score=50.95 Aligned_cols=122 Identities=12% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
.|---|.++.-+ +.++ +..++..|.|-+||||++-......+. + ...+||.|++++...+
T Consensus 74 ~qiiyp~d~~~I-i~~l----------~i~pG~rVLd~G~GsG~lt~~lar~~~---~------~G~V~~~D~~~~~~~~ 133 (255)
T 3mb5_A 74 PQIVHPKDAALI-VAYA----------GISPGDFIVEAGVGSGALTLFLANIVG---P------EGRVVSYEIREDFAKL 133 (255)
T ss_dssp SCCCCHHHHHHH-HHHT----------TCCTTCEEEEECCTTSHHHHHHHHHHC---T------TSEEEEECSCHHHHHH
T ss_pred CCCCCHHHHHHH-HHHH----------CCCCCCEEEECCCCCHHHHHHHHHHCC---C------CCEEEEECCCHHHHHH
T ss_conf 746588999999-9971----------989899899888662799999997438---8------9779983499999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 99998980887533456666823475457999866418999816856765310001112344226666535777747706
Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674)
Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674)
|+.|+-..|.... -.+..+|... .+....||.|+.++|= +|
T Consensus 134 A~~n~~~~gl~~~------v~~~~~D~~~--~~~~~~~D~V~ld~p~--p~----------------------------- 174 (255)
T 3mb5_A 134 AWENIKWAGFDDR------VTIKLKDIYE--GIEEENVDHVILDLPQ--PE----------------------------- 174 (255)
T ss_dssp HHHHHHHHTCTTT------EEEECSCGGG--CCCCCSEEEEEECSSC--GG-----------------------------
T ss_pred HHHHHHHCCCCEE------EEEEECCHHC--CCCCCCCCEEEEECCC--HH-----------------------------
T ss_conf 9999997199814------9999461103--5555656579996685--67-----------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 599999999961466578807999738
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
..+-|+...||| ||++++..|
T Consensus 175 --~~l~~~~~~Lkp----GG~lv~~~p 195 (255)
T 3mb5_A 175 --RVVEHAAKALKP----GGFFVAYTP 195 (255)
T ss_dssp --GGHHHHHHHEEE----EEEEEEEES
T ss_pred --HHHHHHHHHCCC----CCEEEEEEC
T ss_conf --899999985689----988999939