HHsearch results for GI: 254780836 and protein with PDBid: 3mti_A
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus}
Probab=98.19 E-value=5.5e-05 Score=50.57 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
+..+|.|-+||||++..... . . ...+||.|++++..++|+.|+--.|++.- .+..++.-.-
T Consensus 22 ~~~~VLD~gcG~G~~t~~LA----~---~-----~~~V~aiDis~~al~~a~~n~~~~~l~nv-------~~~~~~~~~l 82 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLA----G---L-----SKKVYAFDVQEQALGKTSQRLSDLGIENT-------ELILDGHENL 82 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHH----T---T-----SSEEEEEESCHHHHHHHHHHHHHHTCCCE-------EEEESCGGGG
T ss_pred CCCEEEEEEEECCHHHHHHH----H---C-----CCEEEECCCCHHHHHHHHHHHHHCCCCCE-------EEEECCHHHH
T ss_conf 99999999638889999998----2---6-----99899758987888789999998299848-------9999367775
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 99866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674)
Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674)
+......||.++.|+|+-.. .+..... .....+..|+.+...|++ ||++.++..-
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~--~~~~~~~-----------------~~~~~~~~L~~~~~~Lkp----gG~l~i~~~~-- 137 (185)
T 3mti_A 83 DHYVREPIRAAIFNLGYLPS--ADKSVIT-----------------KPHTTLEAIEKILDRLEV----GGRLAIMIYY-- 137 (185)
T ss_dssp GGTCCSCEEEEEEEEC------------------------------CHHHHHHHHHHHHHHEEE----EEEEEEEEC---
T ss_pred HHHCCCCCCEEEEECCCCCC--CCCCCCC-----------------CHHHHHHHHHHHHHHHCC----CCEEEEEEEC--
T ss_conf 55135666569995265677--8731135-----------------607789999999998389----9889999937--
Q ss_pred CCCCCCCCCHH-HHHHHHHH--CCCEEEEEECCCCCCCC-CCCCEEEEEEECC
Q ss_conf 34776443268-99999988--49468883176776557-8861699999468
Q gi|254780836|r 365 LFNGRAGSGES-EIRRWLLE--NDLIEAIVALPTDLFFR-TNIATYLWILSNR 413 (674)
Q Consensus 365 LF~G~agsGEs-~IRk~lie--~d~ieaII~LP~~lFyn-TgI~t~Iwil~k~ 413 (674)
-+ ..|..|. .|++|+-+ ..-.+ |+.. -|+| ..-|.+++++.|-
T Consensus 138 ~~--~~~~~e~~~i~~~l~~l~~~~f~-v~~~---~~~n~~~~~p~lv~~~k~ 184 (185)
T 3mti_A 138 GH--DGGDMEKDAVLEYVIGLDQRVFT-AMLY---QPLNQINTPPFLVMLEKL 184 (185)
T ss_dssp -------CHHHHHHHHHHHHSCTTTEE-EEEE---EESSCSSCCCEEEEEEEC
T ss_pred CC--CCCHHHHHHHHHHHHHCCCCCEE-EEEE---EECCCCCCCCEEEEEEEC
T ss_conf 99--98789999999999857958639-9999---852688999789999976