RPSBLAST alignment of GI: 254780836 and protein with PDBid: 3khk

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Length = 544

 Score =  217 bits (554), Expect = 6e-57
 Identities = 94/515 (18%), Positives = 175/515 (33%), Gaps = 85/515 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID-- 68
           L N +W+ A+ L  +    ++  V+L    L+ +  A E  +  + E +      NI   
Sbjct: 13  LDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNIYYL 72

Query: 69  -LESFVKVAGYS------------------FYNTSEYSLSTLGSTNTRNNLESYIA-SFS 108
             E +     Y                   F+       + L    T             
Sbjct: 73  PREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQDEQG 132

Query: 109 DNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDR-------------- 153
           ++ K     +   +    +EKA   L  I    S  +L  D +                 
Sbjct: 133 EDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQLDADKLIGLINEFSLTSFNNPEY 192

Query: 154 -----------VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                      ++ ++YE+ + +F     +    + TP+ +V L           + +  
Sbjct: 193 NGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTL-----------IVEML 241

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----HGQELEPETHAVCVA 257
                 +YDP  G+GGF   +   +    +               +GQE  P T  +   
Sbjct: 242 EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH- 316
            M+IR ++ +         +   +   D     R  + ++NPPF  K    +   +    
Sbjct: 302 NMVIRGIDFNF------GKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRW 355

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                G      P   + +  +++H+   L      G  A ++ + S   N    + E E
Sbjct: 356 TINTNGEKRILTPPTGNANFAWMLHM---LYHLAPTGSMALLLANGSMSSNT---NNEGE 409

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLW 431
           IR+ L+E DL+E +VALP  LF  T I   +W L+  K       +RRG+V  I+A  L 
Sbjct: 410 IRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVLFIDARKLG 469

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
                + +  R   D+  +++ D + + +      
Sbjct: 470 YM---KDRVLRDFKDEDIQKLADTFHNWQQEWSEE 501