HHsearch alignment for GI: 254780837 and conserved domain: pfam01420
>pfam01420 Methylase_S Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.
Probab=99.95 E-value=8.7e-28 Score=191.48 Aligned_cols=160 Identities=21% Similarity=0.334 Sum_probs=131.4
Q ss_pred CCCCEEEECCCEEEEEECCCCCCC-----CCEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf 898869884123998506678887-----753688700002064123311222234665533784289789994228752
Q gi|254780837|r 22 PKHWKVVPIKRFTKLNTGRTSESG-----KDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLR 96 (426)
Q Consensus 22 P~~We~~kL~~i~~i~~g~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g 96 (426)
T Consensus 1 P~~We~~~Lg~i~~~~~G~~~~~~~~~~~g~ip~i~~~~~~~~~~~~~---------~~~~~~~~~~~dil~~~~g~~-g 70 (167)
T pfam01420 1 PVDWEEFKLGEIFEIKKGKTLSKKELRENGKYPYITAGDLNNGVIGGV---------GYIKKKIFPGNSILISSNGSI-G 70 (167)
T ss_pred CCCCEEEEEEEEEEEECCCCCCHHHHCCCCCEEEEEEEEECCCCCCEE---------ECCEEEEECCCEEEEECCCCC-E
T ss_conf 979899990529999279989877812379816997402204642100---------011257505981686215774-0
Q ss_pred EEEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 379834648990743871466--678702222211177889888315687166652666344555443323457799999
Q gi|254780837|r 97 KAIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKI 174 (426)
Q Consensus 97 ~~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPpl~eQ~kIv~~L 174 (426)
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~g~~~~~i~~~~i~~~~i~~Ppl~EQ~~I~~~l 148 (167)
T pfam01420 71 YVFYRDKPFFANQDVKVLIPKNNELLNKFLYLFLKT--ILKKLKKLKFGSGQPKLNKKRLKELKIPLPPLEEQQKIADIL 148 (167)
T ss_pred EEEECCCCEEEECCEEEEEECCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 478608875775235899731113328899999974--057787534665301466788605734489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999888776543332222368
Q gi|254780837|r 175 IAETVRIDTLITERIRFIELLKE 197 (426)
Q Consensus 175 d~~~~~Id~~I~~~~~~i~~l~e 197 (426)
T Consensus 149 ~----~ld~~I~~~~~~i~~Lke 167 (167)
T pfam01420 149 E----QLDATIELEKKKLAELEE 167 (167)
T ss_pred H----HHHHHHHHHHHHHHHHCC
T ss_conf 9----999999999999998478