HHsearch alignment for GI: 254780837 and conserved domain: pfam01420
>pfam01420 Methylase_S Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.
Probab=99.86 E-value=3.7e-21 Score=150.25 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=116.9
Q ss_pred CCCCCCCCHHHHCCCCCCCCC----CCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEEE
Q ss_conf 665643302431013456764----4443215774045532465322121000443320242288489974216640379
Q gi|254780837|r 229 PDHWEVKPFFALVTELNRKNT----KLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRS 304 (426)
Q Consensus 229 P~~W~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~ 304 (426)
T Consensus 1 P~~We~~~Lg~i~~~~~G~~~~~~~~~~~g~ip~i~~~~~~~~~~~~------~~~~~~~~~~~~dil~~~~g~~g~~~- 73 (167)
T pfam01420 1 PVDWEEFKLGEIFEIKKGKTLSKKELRENGKYPYITAGDLNNGVIGG------VGYIKKKIFPGNSILISSNGSIGYVF- 73 (167)
T ss_pred CCCCEEEEEEEEEEEECCCCCCHHHHCCCCCEEEEEEEEECCCCCCE------EECCEEEEECCCEEEEECCCCCEEEE-
T ss_conf 97989999052999927998987781237981699740220464210------00112575059816862157740478-
Q ss_pred EEEECCCCCEEEECHHEECCCC--CCCHHHHHHHHHCHHHHHHHHH-HCCCEEEEECHHHHHCCEECCCCHHHHHHHHHH
Q ss_conf 9950235660774111430577--6886889999709899999986-258404100288982472148988999999999
Q gi|254780837|r 305 LRSAQVMERGIITSAYMAVKPH--GIDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNV 381 (426)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~~~~l~~~~i~lP~leeQ~~I~~~ 381 (426)
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~g~~~~~i~~~~i~~~~i~~Ppl~EQ~~I~~~ 147 (167)
T pfam01420 74 ----YRDKPFFANQDVKVLIPKNNELLNKFLYLFLKTI--LKKLKKLKFGSGQPKLNKKRLKELKIPLPPLEEQQKIADI 147 (167)
T ss_pred ----ECCCCEEEECCEEEEEECCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf ----6088757752358997311133288999999740--5778753466530146678860573448999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999
Q gi|254780837|r 382 INVETARIDVLVEKIEQSIVLLKE 405 (426)
Q Consensus 382 l~~~~~~id~li~~~~~~i~~L~~ 405 (426)
T Consensus 148 l~----~ld~~I~~~~~~i~~Lke 167 (167)
T pfam01420 148 LE----QLDATIELEKKKLAELEE 167 (167)
T ss_pred HH----HHHHHHHHHHHHHHHHCC
T ss_conf 99----999999999999998478