HHsearch alignment of GI: 254780837 and MMDB domain: 1ydx_A_1-164
>1ydx_A (A:1-164) Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium}
Probab=99.70 E-value=5.4e-17 Score=123.88 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCC---CC-CCCEEEEECCCCCCCCC
Q ss_conf 223688999999998607881000235750006868665643302431013456764---44-43215774045532465
Q gi|254780837|r 193 ELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNT---KL-IESNILSLSYGNIIQKL 268 (426)
Q Consensus 193 ~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~ 268 (426)
|.++++|+++|++++++ .+++..||.|++|++|++++|++++...++... .+ .++.++++..+++....
T Consensus 4 e~lk~~k~~~l~~~~~~-------~~~~~~~~~~~~p~~We~~~L~~i~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (164)
T 1ydx_A 4 HHHHHHHHHSSGHIDDD-------DKHXTPKLKLNNNINWTKRTIDSLFDLKKGEXLEKELITPEGKYEYFNGGVKNSGR 76 (164)
T ss_dssp ---------------------------CCCSSCSSSSCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEESSSSSCSCE
T ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCCEECCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 33331122330344753-------00168726579999988999100999977988870303468877999767730459
Q ss_pred CCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEE--ECHHEECCCC-CCCHHHHHHHHHCHHHHHH
Q ss_conf 322121000443320242288489974216640379995023566077--4111430577-6886889999709899999
Q gi|254780837|r 269 ETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGII--TSAYMAVKPH-GIDSTYLAWLMRSYDLCKV 345 (426)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~yl~~~l~s~~~~~~ 345 (426)
. ....++.||++++..+..+..+. ...++.+ +..++.++++ .+++.||+|+|++. +.+
T Consensus 77 ~------------~~~~~~~gdil~~~~g~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~yl~~~l~s~--~~~ 137 (164)
T 1ydx_A 77 T------------DKFNTFKNTISVIVGGSCGYVRL-----ADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQ--QER 137 (164)
T ss_dssp E------------SCCCBCSSCEEEECBSSTTCEEE-----CSSCBEECTTEEEEEESCTTTSCHHHHHHHHHTT--HHH
T ss_pred E------------EEEECCCCEEEEECCCCCEEEEE-----ECCCCCCCCCEEEEEECCCHHCCHHHCCCCCCCH--HHH
T ss_conf 8------------67632598199985666427999-----5677311255299997771222872401100135--899
Q ss_pred HHHHCC-CEEEEECHHHHHCCEECCCC
Q ss_conf 986258-40410028898247214898
Q gi|254780837|r 346 FYAMGS-GLRQSLKFEDVKRLPVLVPP 371 (426)
Q Consensus 346 ~~~~~~-g~~~~i~~~~l~~~~i~lP~ 371 (426)
+...++ +++++|+.+++++++||+|+
T Consensus 138 i~~~~~G~~~~~i~~~~l~~~~i~iPS 164 (164)
T 1ydx_A 138 IEALAFGTTIQNIRISDLKELEIPFTS 164 (164)
T ss_dssp HHTTCBCSSSCBCCHHHHHHCEEEECC
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 875405888885257676543220112