HHsearch alignment of GI: 254780837 and MMDB domain: 1yf2_A_235-371
>1yf2_A (A:235-371) Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661}
Probab=99.35 E-value=1.4e-12 Score=96.35 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=87.4
Q ss_pred CEEEEEECCCCCC-------CCCEEEEEEEEEEECCCE-EEECCCCCCC---CCCCCEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 2399850667888-------775368870000206412-3311222234---6655337842897899942287523798
Q gi|254780837|r 32 RFTKLNTGRTSES-------GKDIIYIGLEDVESGTGK-YLPKDGNSRQ---SDTSTVSIFAKGQILYGKLGPYLRKAII 100 (426)
Q Consensus 32 ~i~~i~~g~~~~~-------~~~~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~~~~~~~~~gDil~s~~g~~~g~~~i 100 (426)
|+|++.+|.++++ +.+++++++.++..+... +......... ....+.+.+++||||++++|+.|..+.+
T Consensus 1 di~~i~~G~~~~~~~~~~~~~~~~p~i~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gDili~~~g~~G~~~i~ 80 (137)
T 1yf2_A 1 DIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVL 80 (137)
T ss_dssp HHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCEEEECSSSTTCEEEE
T ss_pred HEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHCCCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 67999479989877644345785134344432244554022676345125552234322025787578740221158886
Q ss_pred ECCCEEEECCEEE-ECCC-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf 3464899074387-1466-6787022222111778898883156871666526663445
Q gi|254780837|r 101 ADFDGICSTQFLV-LQPK-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNI 157 (426)
Q Consensus 101 ~~~~~~~~~~~~v-l~~~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~ 157 (426)
....+++...+.+ ++++ .++|+||+|||+| +++++...++|+++++|+.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~yl~~~l~s--~~~~i~~~~~Gs~~~~i~~~~l~~l 137 (137)
T 1yf2_A 81 TVESTFNQGCKGLFQKNNDSVNTEFYAYYLKF--KKNLLENLSGGSTFKELSKSMLENF 137 (137)
T ss_dssp SSCBEECTTEEEEEESCTTSCCHHHHHHHHHH--THHHHHHHHCSSSSCCCCHHHHHHC
T ss_pred ECCCCCCCCCEEEECCCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEECHHHHCCC
T ss_conf 20232001210000235664378999999999--9999998667103036988984574