Query gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs 161 out of 3207
Neff 9.1
Searched_HMMs 33803
Date Wed Jun 1 17:20:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780837.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ydx_A Type I restriction enz 99.8 4.8E-21 1.4E-25 149.1 8.9 147 4-163 15-164 (164)
2 >1ydx_A Type I restriction enz 99.7 5.4E-17 1.6E-21 123.9 8.9 153 193-371 4-164 (164)
3 >1yf2_A Type I restriction-mod 99.6 1.7E-15 5E-20 114.6 5.8 91 327-422 7-97 (98)
4 >1yf2_A Type I restriction-mod 99.5 3.3E-15 9.7E-20 112.8 3.3 89 118-212 7-95 (98)
5 >1yf2_A Type I restriction-mod 99.3 1.4E-12 4.2E-17 96.3 6.3 124 32-157 1-137 (137)
6 >1yf2_A Type I restriction-mod 98.9 2.2E-09 6.5E-14 76.5 6.9 105 33-140 2-117 (118)
7 >1yf2_A Type I restriction-mod 98.6 4.3E-08 1.3E-12 68.5 5.2 111 248-365 16-137 (137)
8 >1yf2_A Type I restriction-mod 98.1 5.9E-06 1.8E-10 55.1 5.2 89 249-342 17-112 (118)
9 >1yf2_A Type I restriction-mod 93.5 0.02 5.8E-07 33.2 0.5 21 10-33 2-22 (43)
10 >1yf2_A Type I restriction-mod 92.0 0.053 1.6E-06 30.5 1.1 22 9-33 4-25 (29)
11 >1ydx_A Type I restriction enz 82.7 2.5 7.4E-05 20.1 4.8 45 164-214 2-46 (98)
12 >1yf2_A Type I restriction-mod 81.5 0.39 1.1E-05 25.2 0.3 23 215-240 3-25 (29)
13 >3bc1_B Synaptotagmin-like pro 61.2 9 0.00026 16.7 4.4 14 162-175 3-16 (59)
14 >2ih2_A Modification methylase 59.8 9.5 0.00028 16.5 4.4 50 320-369 114-165 (179)
15 >2ysg_A Syntaxin-binding prote 40.8 15 0.00044 15.3 1.8 15 16-30 3-17 (40)
16 >1r48_A Proline/betaine transp 38.3 21 0.00061 14.4 4.4 24 390-413 7-30 (33)
17 >2ez5_W Dnedd4, E3 ubiquitin-p 34.3 20 0.00059 14.5 1.6 15 15-29 5-19 (46)
18 >1tk7_A CG4244-PB; WW domain, 32.7 25 0.00075 13.8 2.1 12 18-29 10-21 (50)
19 >1ydx_A Type I restriction enz 31.9 26 0.00078 13.8 6.2 77 32-118 1-77 (79)
20 >1y71_A Kinase-associated prot 31.0 27 0.0008 13.7 1.8 53 353-408 72-126 (130)
21 >2hu5_A Acylamino-acid-releasi 29.9 9.7 0.00029 16.4 -0.6 19 7-25 1-19 (85)
22 >2ysh_A GAS-7, growth-arrest-s 29.7 29 0.00085 13.5 2.2 13 18-30 5-17 (40)
23 >2djy_A SMAD ubiquitination re 27.1 32 0.00094 13.2 1.8 12 18-29 5-16 (42)
24 >1zke_A Hypothetical protein H 26.5 32 0.00096 13.2 3.1 13 397-409 65-77 (83)
25 >2ysd_A Membrane-associated gu 26.4 28 0.00083 13.6 1.2 11 19-29 13-23 (57)
26 >1wr3_A Ubiquitin-protein liga 26.0 26 0.00078 13.8 1.0 11 19-29 3-13 (36)
27 >1wmv_A WWOX, WW domain contai 25.8 30 0.00088 13.4 1.3 13 18-30 9-21 (54)
28 >1ymz_A CC45; artificial prote 23.4 35 0.001 13.0 1.2 12 19-30 7-18 (43)
29 >2ysc_A Amyloid beta A4 precur 23.2 32 0.00094 13.3 1.0 12 19-30 7-18 (39)
30 >1yw5_A Peptidyl prolyl CIS/tr 22.7 33 0.00097 13.1 1.0 10 19-28 6-15 (39)
31 >1tk7_A CG4244-PB; WW domain, 22.4 39 0.0012 12.7 1.6 11 19-29 5-15 (38)
32 >2ysb_A Salvador homolog 1 pro 22.1 38 0.0011 12.8 1.3 11 19-29 10-20 (49)
33 >1wr7_A NEDD4-2; all-beta, lig 21.8 39 0.0011 12.7 1.3 12 18-29 6-17 (41)
34 >1wr4_A Ubiquitin-protein liga 21.8 39 0.0012 12.7 1.3 12 19-30 3-14 (36)
35 >2yse_A Membrane-associated gu 21.5 37 0.0011 12.8 1.1 12 18-29 11-22 (41)
36 >1rq0_A RF-1, peptide chain re 21.5 41 0.0012 12.6 2.4 30 145-174 13-42 (113)
37 >2ysf_A E3 ubiquitin-protein l 21.3 41 0.0012 12.6 1.8 13 18-30 5-17 (40)
38 >2jmf_A E3 ubiquitin-protein l 21.2 41 0.0012 12.5 1.6 10 226-235 17-26 (53)
39 >2dmv_A Itchy homolog E3 ubiqu 20.4 43 0.0013 12.4 1.2 11 19-29 6-16 (43)
No 1
>>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:1-164)
Probab=99.84 E-value=4.8e-21 Score=149.14 Aligned_cols=147 Identities=18% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECC
Q ss_conf 77880232589962370689886988412399850667888775368870000206412331122223466553378428
Q gi|254780837|r 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAK 83 (426)
Q Consensus 4 ~~~~~~~k~s~~~w~g~iP~~We~~kL~~i~~i~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (426)
++.+|.++.+..+|+|++|++|++++|++||++.+|.+++...- ...+.+..............++.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~p~~We~~~L~~i~~~~~g~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (164)
T 1ydx_A 15 GHIDDDDKHXTPKLKLNNNINWTKRTIDSLFDLKKGEXLEKELI----------TPEGKYEYFNGGVKNSGRTDKFNTFK 84 (164)
T ss_dssp ---------CCCSSCSSSSCCCEEEEHHHHEEEEECCCCCGGGC----------CTTCSEEEESSSSSCSCEESCCCBCS
T ss_pred CCCCCCCCCCCCCEECCCCCCCEEEECCEEEEEECCCCCCCCCC----------CCCCCEEEEECCCCCCEEEEEEECCC
T ss_conf 34475300168726579999988999100999977988870303----------46887799976773045986763259
Q ss_pred CCEEEEEECCCCCEEEEECCCEEEECCE--EEECCC-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH
Q ss_conf 9789994228752379834648990743--871466-6787022222111778898883156871666526663445554
Q gi|254780837|r 84 GQILYGKLGPYLRKAIIADFDGICSTQF--LVLQPK-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMP 160 (426)
Q Consensus 84 gDil~s~~g~~~g~~~i~~~~~~~~~~~--~vl~~~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~ip 160 (426)
||+|++++|+.+.++.. +.++.+..+. ++++++ .+++.||+|+|++ ++.++...++|+++++|+.++|++++||
T Consensus 85 gdil~~~~g~~g~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~yl~~~l~s--~~~~i~~~~~G~~~~~i~~~~l~~~~i~ 161 (164)
T 1ydx_A 85 NTISVIVGGSCGYVRLA-DKNFFCGQSNCTLNLLDPLELDLKFAYYALKS--QQERIEALAFGTTIQNIRISDLKELEIP 161 (164)
T ss_dssp SCEEEECBSSTTCEEEC-SSCBEECTTEEEEEESCTTTSCHHHHHHHHHT--THHHHHTTCBCSSSCBCCHHHHHHCEEE
T ss_pred CEEEEECCCCCEEEEEE-CCCCCCCCCEEEEEECCCHHCCHHHCCCCCCC--HHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 81999856664279995-67731125529999777122287240110013--5899875405888885257676543220
Q ss_pred HHH
Q ss_conf 433
Q gi|254780837|r 161 IPP 163 (426)
Q Consensus 161 lPp 163 (426)
+|+
T Consensus 162 iPS 164 (164)
T 1ydx_A 162 FTS 164 (164)
T ss_dssp ECC
T ss_pred HCC
T ss_conf 112
No 2
>>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:1-164)
Probab=99.70 E-value=5.4e-17 Score=123.88 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCC---CC-CCCEEEEECCCCCCCCC
Q ss_conf 223688999999998607881000235750006868665643302431013456764---44-43215774045532465
Q gi|254780837|r 193 ELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNT---KL-IESNILSLSYGNIIQKL 268 (426)
Q Consensus 193 ~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~ 268 (426)
|.++++|+++|++++++ .+++..||.|++|++|++++|++++...++... .+ .++.++++..+++....
T Consensus 4 e~lk~~k~~~l~~~~~~-------~~~~~~~~~~~~p~~We~~~L~~i~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (164)
T 1ydx_A 4 HHHHHHHHHSSGHIDDD-------DKHXTPKLKLNNNINWTKRTIDSLFDLKKGEXLEKELITPEGKYEYFNGGVKNSGR 76 (164)
T ss_dssp ---------------------------CCCSSCSSSSCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEESSSSSCSCE
T ss_pred CCCCCCCCCCCCCCCCC-------CCCCCCCEECCCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCEE
T ss_conf 33331122330344753-------00168726579999988999100999977988870303468877999767730459
Q ss_pred CCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEE--ECHHEECCCC-CCCHHHHHHHHHCHHHHHH
Q ss_conf 322121000443320242288489974216640379995023566077--4111430577-6886889999709899999
Q gi|254780837|r 269 ETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGII--TSAYMAVKPH-GIDSTYLAWLMRSYDLCKV 345 (426)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~yl~~~l~s~~~~~~ 345 (426)
. ....++.||++++..+..+..+. ...++.+ +..++.++++ .+++.||+|+|++. +.+
T Consensus 77 ~------------~~~~~~~gdil~~~~g~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~yl~~~l~s~--~~~ 137 (164)
T 1ydx_A 77 T------------DKFNTFKNTISVIVGGSCGYVRL-----ADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQ--QER 137 (164)
T ss_dssp E------------SCCCBCSSCEEEECBSSTTCEEE-----CSSCBEECTTEEEEEESCTTTSCHHHHHHHHHTT--HHH
T ss_pred E------------EEEECCCCEEEEECCCCCEEEEE-----ECCCCCCCCCEEEEEECCCHHCCHHHCCCCCCCH--HHH
T ss_conf 8------------67632598199985666427999-----5677311255299997771222872401100135--899
Q ss_pred HHHHCC-CEEEEECHHHHHCCEECCCC
Q ss_conf 986258-40410028898247214898
Q gi|254780837|r 346 FYAMGS-GLRQSLKFEDVKRLPVLVPP 371 (426)
Q Consensus 346 ~~~~~~-g~~~~i~~~~l~~~~i~lP~ 371 (426)
+...++ +++++|+.+++++++||+|+
T Consensus 138 i~~~~~G~~~~~i~~~~l~~~~i~iPS 164 (164)
T 1ydx_A 138 IEALAFGTTIQNIRISDLKELEIPFTS 164 (164)
T ss_dssp HHTTCBCSSSCBCCHHHHHHCEEEECC
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 875405888885257676543220112
No 3
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:1-6,A:168-211,A:378-425)
Probab=99.59 E-value=1.7e-15 Score=114.55 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68868899997098999999862584041002889824721489889999999999999999999999999999999999
Q gi|254780837|r 327 GIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKER 406 (426)
Q Consensus 327 ~~~~~yl~~~l~s~~~~~~~~~~~~g~~~~i~~~~l~~~~i~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~l 406 (426)
..++.|++|+|++........ .+++++++++.+++.+++|++|+++||++||+.|+. +|..++..++.++.|+++
T Consensus 7 ~~d~~yl~~~l~s~~~~~~~~-~~gs~~~~i~~~~l~~~~i~iP~l~eQ~~I~~~L~~----id~~i~~~~~~~~~l~~l 81 (98)
T 1yf2_A 7 LEEQKQIAKILTKIDEGIEII-EKSINKLERIKKGLMHKLLTKGILEEQKQIAKILSS----VDKSIELKKQKKEKLQRM 81 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHEEEEEECCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_conf 240100520110013554677-777789999999999876641369999999999999----999999999999999999
Q ss_pred HHHHHHHHHCCEEECC
Q ss_conf 9997788622336148
Q gi|254780837|r 407 RSSFIAAAVTGQIDLR 422 (426)
Q Consensus 407 k~sLl~~a~tGki~V~ 422 (426)
+++|++++|+|++||+
T Consensus 82 k~~ll~~~f~g~~r~~ 97 (98)
T 1yf2_A 82 KKKIMELLLTGKVRVK 97 (98)
T ss_dssp HHHHHHHHTTTSCEEC
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999847305861
No 4
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:1-6,A:168-211,A:378-425)
Probab=99.53 E-value=3.3e-15 Score=112.79 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67870222221117788988831568716665266634455544332345779999999999888776543332222368
Q gi|254780837|r 118 DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKE 197 (426)
Q Consensus 118 ~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e 197 (426)
-.+|+|++|+|.+ +..++...+.|+++++++.+++.+++||+|+++||++||++|+. +|+.|+..++.++.|++
T Consensus 7 ~~d~~yl~~~l~s--~~~~~~~~~~gs~~~~i~~~~l~~~~i~iP~l~eQ~~I~~~L~~----id~~i~~~~~~~~~l~~ 80 (98)
T 1yf2_A 7 LEEQKQIAKILTK--IDEGIEIIEKSINKLERIKKGLMHKLLTKGILEEQKQIAKILSS----VDKSIELKKQKKEKLQR 80 (98)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHEEEEEECC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_conf 2401005201100--13554677777789999999999876641369999999999999----99999999999999999
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 899999999860788
Q gi|254780837|r 198 KKQALVSYIVTKGLN 212 (426)
Q Consensus 198 ~kqali~~~~tk~L~ 212 (426)
+++++++++|+++++
T Consensus 81 lk~~ll~~~f~g~~r 95 (98)
T 1yf2_A 81 MKKKIMELLLTGKVR 95 (98)
T ss_dssp HHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999998473058
No 5
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:235-371)
Probab=99.35 E-value=1.4e-12 Score=96.35 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=87.4
Q ss_pred CEEEEEECCCCCC-------CCCEEEEEEEEEEECCCE-EEECCCCCCC---CCCCCEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 2399850667888-------775368870000206412-3311222234---6655337842897899942287523798
Q gi|254780837|r 32 RFTKLNTGRTSES-------GKDIIYIGLEDVESGTGK-YLPKDGNSRQ---SDTSTVSIFAKGQILYGKLGPYLRKAII 100 (426)
Q Consensus 32 ~i~~i~~g~~~~~-------~~~~~~~~~~~i~~~~~~-~~~~~~~~~~---~~~~~~~~~~~gDil~s~~g~~~g~~~i 100 (426)
|+|++.+|.++++ +.+++++++.++..+... +......... ....+.+.+++||||++++|+.|..+.+
T Consensus 1 di~~i~~G~~~~~~~~~~~~~~~~p~i~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gDili~~~g~~G~~~i~ 80 (137)
T 1yf2_A 1 DIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVL 80 (137)
T ss_dssp HHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCEEEECSSSTTCEEEE
T ss_pred HEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHCCCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 67999479989877644345785134344432244554022676345125552234322025787578740221158886
Q ss_pred ECCCEEEECCEEE-ECCC-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHH
Q ss_conf 3464899074387-1466-6787022222111778898883156871666526663445
Q gi|254780837|r 101 ADFDGICSTQFLV-LQPK-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNI 157 (426)
Q Consensus 101 ~~~~~~~~~~~~v-l~~~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~ 157 (426)
....+++...+.+ ++++ .++|+||+|||+| +++++...++|+++++|+.++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~i~~~yl~~~l~s--~~~~i~~~~~Gs~~~~i~~~~l~~l 137 (137)
T 1yf2_A 81 TVESTFNQGCKGLFQKNNDSVNTEFYAYYLKF--KKNLLENLSGGSTFKELSKSMLENF 137 (137)
T ss_dssp SSCBEECTTEEEEEESCTTSCCHHHHHHHHHH--THHHHHHHHCSSSSCCCCHHHHHHC
T ss_pred ECCCCCCCCCEEEECCCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEECHHHHCCC
T ss_conf 20232001210000235664378999999999--9999998667103036988984574
No 6
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:28-145)
Probab=98.94 E-value=2.2e-09 Score=76.50 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=75.9
Q ss_pred EEEEEECCCCCC-------CCCEEEEEEEEEEECCCEEEECCCCCCC--CCCCCEEEECCCCEEEEEECCCCCEEEEECC
Q ss_conf 399850667888-------7753688700002064123311222234--6655337842897899942287523798346
Q gi|254780837|r 33 FTKLNTGRTSES-------GKDIIYIGLEDVESGTGKYLPKDGNSRQ--SDTSTVSIFAKGQILYGKLGPYLRKAIIADF 103 (426)
Q Consensus 33 i~~i~~g~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~gDil~s~~g~~~g~~~i~~~ 103 (426)
.+++.+|.+|++ +.+++++++.++..+............. .+..+.+.+++||||++++|+.|. +++.+.
T Consensus 2 ~~~i~~G~~~~~~~~~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~-~~i~~~ 80 (118)
T 1yf2_A 2 CKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGE-TAINKI 80 (118)
T ss_dssp EEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTC-EEEESS
T ss_pred HEEECCCCCCCCCCHHCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCC-CCCCCC
T ss_conf 3510578788876220117897489985212368716447608976778512033741699489996347886-421232
Q ss_pred CEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHC
Q ss_conf 48990743871466--67870222221117788988831
Q gi|254780837|r 104 DGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAI 140 (426)
Q Consensus 104 ~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~ 140 (426)
+++++++++.++++ .+++.||+|||.|. +.++...
T Consensus 81 ~~~~~~~~~~i~~~~~~i~~~yL~~~l~s~--~~~i~~~ 117 (118)
T 1yf2_A 81 EVATNQAILGIIPKDNILESEFLYYILAKN--KNYYSKL 117 (118)
T ss_dssp CBEECSSEEEEEECTTTCCHHHHHHHHHHT--HHHHHCC
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCH--HHHHHHH
T ss_conf 110011111223332201478876654010--5788874
No 7
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:235-371)
Probab=98.63 E-value=4.3e-08 Score=68.49 Aligned_cols=111 Identities=7% Similarity=0.047 Sum_probs=71.1
Q ss_pred CCCCCCCEEEEECCCCCCCCCCC----CCCCEEC-CCC--CCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEC-H
Q ss_conf 64444321577404553246532----2121000-443--32024228848997421664037999502356607741-1
Q gi|254780837|r 248 NTKLIESNILSLSYGNIIQKLET----RNMGLKP-ESY--ETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITS-A 319 (426)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~--~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (426)
...+.+.++|+++.+++...... ....... +.. .....+++||+|++..++.+..+.+ .++..++. .
T Consensus 16 ~~~~~~~~~p~i~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gDili~~~g~~G~~~i~-----~~~~~~~~~~ 90 (137)
T 1yf2_A 16 SEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVL-----TVESTFNQGC 90 (137)
T ss_dssp GGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCEEEECSSSTTCEEEE-----SSCBEECTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHCCCCCCCCCCCCEEEEEECCCEEEEEE-----ECCCCCCCCC
T ss_conf 44345785134344432244554022676345125552234322025787578740221158886-----2023200121
Q ss_pred -HEECCC-CCCCHHHHHHHHHCHHHHHHHHHHC-CCEEEEECHHHHHCC
Q ss_conf -143057-7688688999970989999998625-840410028898247
Q gi|254780837|r 320 -YMAVKP-HGIDSTYLAWLMRSYDLCKVFYAMG-SGLRQSLKFEDVKRL 365 (426)
Q Consensus 320 -~~~~~~-~~~~~~yl~~~l~s~~~~~~~~~~~-~g~~~~i~~~~l~~~ 365 (426)
++++++ +.++++||||+|++. +.++...+ ++++++|+.++|+++
T Consensus 91 ~~~~~~~~~~i~~~yl~~~l~s~--~~~i~~~~~Gs~~~~i~~~~l~~l 137 (137)
T 1yf2_A 91 KGLFQKNNDSVNTEFYAYYLKFK--KNLLENLSGGSTFKELSKSMLENF 137 (137)
T ss_dssp EEEEESCTTSCCHHHHHHHHHHT--HHHHHHHHCSSSSCCCCHHHHHHC
T ss_pred EEEECCCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCEECHHHHCCC
T ss_conf 00002356643789999999999--999998667103036988984574
No 8
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:28-145)
Probab=98.07 E-value=5.9e-06 Score=55.14 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCC-CC-CEE-CC--CCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEEC
Q ss_conf 44443215774045532465322-12-100-04--433202422884899742166403799950235660774111430
Q gi|254780837|r 249 TKLIESNILSLSYGNIIQKLETR-NM-GLK-PE--SYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAV 323 (426)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~~--~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (426)
..+.++++|+++..++....... .. .+. .. .......+++||+|++..|+.+..+ ....+++++++++.+
T Consensus 17 ~~~~~~g~p~i~~~di~~~~~~~~~~~~~i~~~~~~~~~~~~l~~gDIli~~~GtiG~~~-----i~~~~~~~~~~~~~i 91 (118)
T 1yf2_A 17 EYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETA-----INKIEVATNQAILGI 91 (118)
T ss_dssp GGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHHHTSSCCCBCTTCEEEECSSSTTCEE-----EESSCBEECSSEEEE
T ss_pred HCCCCCCEEEEEECCCCCCCCEECCCEEEECHHHHHHHCCEECCCCCEEEEEECCCCCCC-----CCCCCCCCCCCCCCC
T ss_conf 011789748998521236871644760897677851203374169948999634788642-----123211001111122
Q ss_pred CCC--CCCHHHHHHHHHCHHH
Q ss_conf 577--6886889999709899
Q gi|254780837|r 324 KPH--GIDSTYLAWLMRSYDL 342 (426)
Q Consensus 324 ~~~--~~~~~yl~~~l~s~~~ 342 (426)
+++ .+++.||+|+|+|...
T Consensus 92 ~~~~~~i~~~yL~~~l~s~~~ 112 (118)
T 1yf2_A 92 IPKDNILESEFLYYILAKNKN 112 (118)
T ss_dssp EECTTTCCHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHCCHHH
T ss_conf 333220147887665401057
No 9
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:7-27,A:146-167)
Probab=93.49 E-value=0.02 Score=33.22 Aligned_cols=21 Identities=38% Similarity=0.983 Sum_probs=11.8
Q ss_pred HCCCCCCCCCCCCCCCEEEECCCE
Q ss_conf 325899623706898869884123
Q gi|254780837|r 10 YKDSGVQWIGAIPKHWKVVPIKRF 33 (426)
Q Consensus 10 ~k~s~~~w~g~iP~~We~~kL~~i 33 (426)
||-++ ||+||++|+++.|++.
T Consensus 2 fkkte---igeipedweivelkdm 22 (43)
T 1yf2_A 2 FKKTE---IGEIPEDWEIVELKDM 22 (43)
T ss_dssp CBCCS---SSSCBSSCCCEEHHHS
T ss_pred CCCCC---CCCCCCCCEEEEHHHC
T ss_conf 67798---9836997789994896
No 10
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:212-234,A:372-377)
Probab=91.98 E-value=0.053 Score=30.52 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=16.3
Q ss_pred HHCCCCCCCCCCCCCCCEEEECCCE
Q ss_conf 2325899623706898869884123
Q gi|254780837|r 9 QYKDSGVQWIGAIPKHWKVVPIKRF 33 (426)
Q Consensus 9 ~~k~s~~~w~g~iP~~We~~kL~~i 33 (426)
.||.|+ ||+||++|++-.++.|
T Consensus 4 rfkkse---igeipedwevfeikki 25 (29)
T 1yf2_A 4 RFKKSE---IGEIPEDWEVFEIKKI 25 (29)
T ss_dssp CEECCT---TSSEETTCEEEEHHEE
T ss_pred CCCCCC---CCCCCCCCEEEEHHEE
T ss_conf 333432---4778876558673388
No 11
>>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:165-220,A:365-406)
Probab=82.67 E-value=2.5 Score=20.12 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 234577999999999988877654333222236889999999986078810
Q gi|254780837|r 164 LAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPD 214 (426)
Q Consensus 164 l~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~ 214 (426)
..+|+.||.-|. -.|+.++....+|+....++..+-...|+ |+|.
T Consensus 2 kn~q~~ia~~ls----vfd~r~e~l~~lieinrklrdeyahklfs--ld~~ 46 (98)
T 1ydx_A 2 KNEQHAIANTLS----VFDERLENLASLIEINRKLRDEYAHKLFS--LDEA 46 (98)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCC
T ss_conf 367999999999----99999999999999999999999998751--1455
No 12
>>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} (A:212-234,A:372-377)
Probab=81.52 E-value=0.39 Score=25.16 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=17.0
Q ss_pred CCCCCCCHHCCCCCCCCCCCCCHHHH
Q ss_conf 00235750006868665643302431
Q gi|254780837|r 215 VKMKDSGIEWVGLVPDHWEVKPFFAL 240 (426)
Q Consensus 215 ~~~k~s~~e~lG~IP~~W~~~~l~~~ 240 (426)
.+||.|+ +|+||+.|++-.++.+
T Consensus 3 srfkkse---igeipedwevfeikki 25 (29)
T 1yf2_A 3 SRFKKSE---IGEIPEDWEVFEIKKI 25 (29)
T ss_dssp CCEECCT---TSSEETTCEEEEHHEE
T ss_pred CCCCCCC---CCCCCCCCEEEEHHEE
T ss_conf 5333432---4778876558673388
No 13
>>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens} (B:)
Probab=61.15 E-value=9 Score=16.67 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 33234577999999
Q gi|254780837|r 162 PPLAEQVLIREKII 175 (426)
Q Consensus 162 Ppl~eQ~kIv~~Ld 175 (426)
|..+||.+|+.+|.
T Consensus 3 ~~~EEq~aI~~VL~ 16 (59)
T 3bc1_B 3 PEFEEQEAIMKVLQ 16 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 20789999999999
No 14
>>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} (A:243-421)
Probab=59.77 E-value=9.5 Score=16.52 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.2
Q ss_pred HEECCCC--CCCHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHHHHCCEECC
Q ss_conf 1430577--6886889999709899999986258404100288982472148
Q gi|254780837|r 320 YMAVKPH--GIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLV 369 (426)
Q Consensus 320 ~~~~~~~--~~~~~yl~~~l~s~~~~~~~~~~~~g~~~~i~~~~l~~~~i~l 369 (426)
+..+..+ .++.+.+.-+|+|...+.++...=.-..++|+...|+.+++|-
T Consensus 114 fHLlpKe~v~l~~~~vV~~LNS~~iq~yvk~lYRdivpHLti~qL~~lP~P~ 165 (179)
T 2ih2_A 114 FHLLPKEGVRLDPSSLVQWLNSEAMQKHVRTLYRDFVPHLTLRMLERLPVRR 165 (179)
T ss_dssp EEEEECTTEEECHHHHHHHHTSHHHHHHHHHHHTTSSSSCCHHHHTTCEECT
T ss_pred EEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
T ss_conf 9999668975549999999786999999998648888763799998689977
No 15
>>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=40.77 E-value=15 Score=15.28 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=8.5
Q ss_pred CCCCCCCCCCEEEEC
Q ss_conf 623706898869884
Q gi|254780837|r 16 QWIGAIPKHWKVVPI 30 (426)
Q Consensus 16 ~w~g~iP~~We~~kL 30 (426)
...++||.|||...=
T Consensus 3 ~~~~~LP~GWe~~~d 17 (40)
T 2ysg_A 3 SGSSGLPYGWEEAYT 17 (40)
T ss_dssp CSSSCCCTTEEEEEC
T ss_pred CCCCCCCCCCEEEEC
T ss_conf 887989999678798
No 16
>>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} (A:)
Probab=38.26 E-value=21 Score=14.40 Aligned_cols=24 Identities=17% Similarity=0.452 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997788
Q gi|254780837|r 390 DVLVEKIEQSIVLLKERRSSFIAA 413 (426)
Q Consensus 390 d~li~~~~~~i~~L~~lk~sLl~~ 413 (426)
++.|+.+.++|..|+.-|+.|..+
T Consensus 7 EQKIedId~qIaeLe~KR~~Lv~Q 30 (33)
T 1r48_A 7 EQKIDDIDHEIADLQAKRTRLVQQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998987999999999999999873
No 17
>>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} (W:)
Probab=34.28 E-value=20 Score=14.51 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCEEEE
Q ss_conf 962370689886988
Q gi|254780837|r 15 VQWIGAIPKHWKVVP 29 (426)
Q Consensus 15 ~~w~g~iP~~We~~k 29 (426)
....++||.|||...
T Consensus 5 ~~~~~~LP~GWe~~~ 19 (46)
T 2ez5_W 5 SGEEEPLPPRWSMQV 19 (46)
T ss_dssp SCCSCCCCTTEEEEE
T ss_pred CCCCCCCCCCCEEEE
T ss_conf 676798999924878
No 18
>>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} (A:1-50)
Probab=32.71 E-value=25 Score=13.84 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.8
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.|||...
T Consensus 10 ~~~LP~GWe~~~ 21 (50)
T 1tk7_A 10 LGPLPDGWEKKI 21 (50)
T ss_dssp TSSSSSSCCEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 899999858989
No 19
>>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} (A:231-309)
Probab=31.94 E-value=26 Score=13.77 Aligned_cols=77 Identities=14% Similarity=0.102 Sum_probs=39.5
Q ss_pred CEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCCEEEECCE
Q ss_conf 23998506678887753688700002064123311222234665533784289789994228752379834648990743
Q gi|254780837|r 32 RFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQF 111 (426)
Q Consensus 32 ~i~~i~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~ 111 (426)
+++.+.+|+-..++.. ...++|.+...-........----+++.|-+-.-|-.+|.+-+.+.++++++.-
T Consensus 1 e~F~lKsGk~Lk~e~~----------~~dGKf~Yy~~GI~~tg~vnE~NT~kdTiSiI~~GyS~G~iR~~~~~~F~Gt~s 70 (79)
T 1ydx_A 1 EIFNFKSGKYLKSEER----------LEEGKFPYYGAGIDNTGFVAEPNTEKDTISIISNGYSLGNIRYHEIPWFNGTGS 70 (79)
T ss_dssp GTEEEEECCCCCGGGC----------BSSCSEEEESSSSSCSSEESSCSBCSSEEEEECSSTTTTCEEEESSCBEECTTE
T ss_pred EEEEECCCCCCCCCCC----------CCCCCCCEEEECCCCCCCCCEECCCCCCEEEEECCCCCEEEEEECCCCCCCCCE
T ss_conf 4676315876566531----------024544178523445764421111367506840378541688631333444635
Q ss_pred EEECCCC
Q ss_conf 8714666
Q gi|254780837|r 112 LVLQPKD 118 (426)
Q Consensus 112 ~vl~~~~ 118 (426)
+.+.|.+
T Consensus 71 ~ale~~~ 77 (79)
T 1ydx_A 71 IALEPXN 77 (79)
T ss_dssp EEEEESS
T ss_pred EEEEECC
T ss_conf 9999435
No 20
>>1y71_A Kinase-associated protein B; structural genomics, midwest center for structural genomics, MCSG, protein structure initiative, PSI; 1.95A {Bacillus cereus} (A:)
Probab=31.00 E-value=27 Score=13.69 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=27.9
Q ss_pred EEEEECHHHHHCCEECCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0410028898247214898899--9999999999999999999999999999999999
Q gi|254780837|r 353 LRQSLKFEDVKRLPVLVPPIKE--QFDITNVINVETARIDVLVEKIEQSIVLLKERRS 408 (426)
Q Consensus 353 ~~~~i~~~~l~~~~i~lP~lee--Q~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~ 408 (426)
-+.++....++.+..-+|+.++ |+.+....+++.. .--+-.++.++.|++||+
T Consensus 72 Ek~~ip~~~vk~yegeipdY~~SLq~A~~~~~~~L~~---~~s~~a~~sL~~L~~Lkk 126 (130)
T 1y71_A 72 EQTNIPEQXVKKYEGEIPDYTESLKLALETQXNSFSE---DDSPFAERSLETLQQLKK 126 (130)
T ss_dssp CEEEEEGGGEEECCSCCCCHHHHHHHHHHHHHHTTTT---CCSHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHH
T ss_conf 7863988765106787899799999999999999750---164999999999999988
No 21
>>2hu5_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase, beta-propeller, enzyme-inhibitor complex; HET: PHE; 2.00A {Aeropyrum pernix} (A:240-324)
Probab=29.92 E-value=9.7 Score=16.45 Aligned_cols=19 Identities=21% Similarity=0.875 Sum_probs=15.4
Q ss_pred CHHHCCCCCCCCCCCCCCC
Q ss_conf 8023258996237068988
Q gi|254780837|r 7 YPQYKDSGVQWIGAIPKHW 25 (426)
Q Consensus 7 ~~~~k~s~~~w~g~iP~~W 25 (426)
|.+|..+-+-|+|.+|.+-
T Consensus 1 fssyrptaitwlgylpdgr 19 (85)
T 2hu5_A 1 FSSYRPTAITWLGYLPDGR 19 (85)
T ss_dssp HHHHCCSEEEEEEECTTSC
T ss_pred CCCCCCCCCCCEEECCCCE
T ss_conf 5643456522125558971
No 22
>>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=29.67 E-value=29 Score=13.53 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=8.1
Q ss_pred CCCCCCCCEEEEC
Q ss_conf 3706898869884
Q gi|254780837|r 18 IGAIPKHWKVVPI 30 (426)
Q Consensus 18 ~g~iP~~We~~kL 30 (426)
.++||.||+...=
T Consensus 5 ~~~LP~gWe~~~~ 17 (40)
T 2ysh_A 5 SSGLPPGWQSYLS 17 (40)
T ss_dssp CSSCCTTCEEEEC
T ss_pred CCCCCCCCEEEEC
T ss_conf 6889978479898
No 23
>>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} (A:)
Probab=27.05 E-value=32 Score=13.24 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=6.6
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.|||...
T Consensus 5 ~~~LP~GWe~~~ 16 (42)
T 2djy_A 5 SGPLPPGWEIRN 16 (42)
T ss_dssp CSCCCSSEEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 698998926889
No 24
>>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural genomics, PSI, protein structure initiative; 1.60A {Helicobacter pylori 26695} (A:)
Probab=26.54 E-value=32 Score=13.18 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780837|r 397 EQSIVLLKERRSS 409 (426)
Q Consensus 397 ~~~i~~L~~lk~s 409 (426)
.++|+.|+.+|+.
T Consensus 65 K~~IdaLNKiKke 77 (83)
T 1zke_A 65 KELINALNKIKKG 77 (83)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999888
No 25
>>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=26.40 E-value=28 Score=13.59 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=5.7
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.||+...
T Consensus 13 ~~LP~GWe~~~ 23 (57)
T 2ysd_A 13 GPLPENWEMAY 23 (57)
T ss_dssp CSCCSSEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 98998858878
No 26
>>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} (A:)
Probab=26.03 E-value=26 Score=13.75 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.1
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.|||...
T Consensus 3 ~~LP~GWe~~~ 13 (36)
T 1wr3_A 3 PPLPPGWEEKV 13 (36)
T ss_dssp SCSCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 77899858979
No 27
>>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} (A:)
Probab=25.76 E-value=30 Score=13.42 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=7.4
Q ss_pred CCCCCCCCEEEEC
Q ss_conf 3706898869884
Q gi|254780837|r 18 IGAIPKHWKVVPI 30 (426)
Q Consensus 18 ~g~iP~~We~~kL 30 (426)
.++||.|||.+.=
T Consensus 9 ~~~LP~GWe~~~d 21 (54)
T 1wmv_A 9 AGDLPYGWEQETD 21 (54)
T ss_dssp SSCSCTTEEEEEC
T ss_pred CCCCCCCCEEEEC
T ss_conf 8978999578788
No 28
>>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} (A:)
Probab=23.37 E-value=35 Score=13.01 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.1
Q ss_pred CCCCCCCEEEEC
Q ss_conf 706898869884
Q gi|254780837|r 19 GAIPKHWKVVPI 30 (426)
Q Consensus 19 g~iP~~We~~kL 30 (426)
++||.||+...-
T Consensus 7 ~~LP~GWe~~~~ 18 (43)
T 1ymz_A 7 MPLPPGWERRTD 18 (43)
T ss_dssp CCCCSSEEEEEC
T ss_pred CCCCCCCEEEEC
T ss_conf 988998789798
No 29
>>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=23.20 E-value=32 Score=13.25 Aligned_cols=12 Identities=25% Similarity=0.803 Sum_probs=6.6
Q ss_pred CCCCCCCEEEEC
Q ss_conf 706898869884
Q gi|254780837|r 19 GAIPKHWKVVPI 30 (426)
Q Consensus 19 g~iP~~We~~kL 30 (426)
++||.|||...=
T Consensus 7 ~~LP~GWe~~~d 18 (39)
T 2ysc_A 7 GGLPPGWRKIHD 18 (39)
T ss_dssp CCCCTTEEEEEE
T ss_pred CCCCCCCEEEEC
T ss_conf 889998689799
No 30
>>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:1-39)
Probab=22.68 E-value=33 Score=13.15 Aligned_cols=10 Identities=20% Similarity=0.860 Sum_probs=5.4
Q ss_pred CCCCCCCEEE
Q ss_conf 7068988698
Q gi|254780837|r 19 GAIPKHWKVV 28 (426)
Q Consensus 19 g~iP~~We~~ 28 (426)
+.||.||+.+
T Consensus 6 ~~LP~GWe~~ 15 (39)
T 1yw5_A 6 TGLPPNWTIR 15 (39)
T ss_dssp CCCCTTEEEE
T ss_pred CCCCCCCEEE
T ss_conf 9999985672
No 31
>>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} (A:51-88)
Probab=22.38 E-value=39 Score=12.69 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=5.3
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
+++|.|||...
T Consensus 5 ~~LP~GWe~~~ 15 (38)
T 1tk7_A 5 GPLPPGWEIRY 15 (38)
T ss_dssp CSSCSSCEEEE
T ss_pred CCCCCCEEEEE
T ss_conf 45563307999
No 32
>>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=22.10 E-value=38 Score=12.75 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=5.7
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.||+...
T Consensus 10 ~~LP~gWe~~~ 20 (49)
T 2ysb_A 10 LPLPPGWSVDW 20 (49)
T ss_dssp CCCCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 98999857878
No 33
>>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} (A:)
Probab=21.85 E-value=39 Score=12.70 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=6.1
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.|||...
T Consensus 6 ~~~LP~GWe~~~ 17 (41)
T 1wr7_A 6 QSFLPPGWEMRI 17 (41)
T ss_dssp CCSSCTTEEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 688999865878
No 34
>>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} (A:)
Probab=21.80 E-value=39 Score=12.68 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=6.6
Q ss_pred CCCCCCCEEEEC
Q ss_conf 706898869884
Q gi|254780837|r 19 GAIPKHWKVVPI 30 (426)
Q Consensus 19 g~iP~~We~~kL 30 (426)
++||.||+...=
T Consensus 3 ~~LP~gWe~~~~ 14 (36)
T 1wr4_A 3 PGLPSGWEERKD 14 (36)
T ss_dssp TTCCTTEEEEEC
T ss_pred CCCCCCCEEEEC
T ss_conf 767999279898
No 35
>>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-41)
Probab=21.46 E-value=37 Score=12.81 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=6.8
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.|||..-
T Consensus 11 p~~LP~GWE~~~ 22 (41)
T 2yse_A 11 ELELPAGWEKIE 22 (41)
T ss_dssp CSSCCSSEEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 898999950779
No 36
>>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:1-83,A:313-342)
Probab=21.45 E-value=41 Score=12.57 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.5
Q ss_pred CEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 166652666344555443323457799999
Q gi|254780837|r 145 TMSHADWKGIGNIPMPIPPLAEQVLIREKI 174 (426)
Q Consensus 145 ~~~~i~~~~l~~~~iplPpl~eQ~kIv~~L 174 (426)
++|.++...++|+-+-...++|-.-|++.+
T Consensus 13 ~rpdlspe~mknyg~eyak~eeie~i~nri 42 (113)
T 1rq0_A 13 ARPDLTPEQMKNYGMEYAKIEEIENITNRI 42 (113)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 289989999999999999999999999999
No 37
>>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=21.27 E-value=41 Score=12.55 Aligned_cols=13 Identities=15% Similarity=0.511 Sum_probs=7.2
Q ss_pred CCCCCCCCEEEEC
Q ss_conf 3706898869884
Q gi|254780837|r 18 IGAIPKHWKVVPI 30 (426)
Q Consensus 18 ~g~iP~~We~~kL 30 (426)
.++||.|||...-
T Consensus 5 ~~~LP~GWe~~~~ 17 (40)
T 2ysf_A 5 SSGLPEGWEMRFT 17 (40)
T ss_dssp CCCCCSSEEEEEC
T ss_pred CCCCCCCCEEEEC
T ss_conf 7989989268898
No 38
>>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} (A:)
Probab=21.21 E-value=41 Score=12.54 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q ss_conf 8686656433
Q gi|254780837|r 226 GLVPDHWEVK 235 (426)
Q Consensus 226 G~IP~~W~~~ 235 (426)
+.+|.||+.+
T Consensus 17 ~pLP~GWe~~ 26 (53)
T 2jmf_A 17 GPLPPGWEIR 26 (53)
T ss_dssp SCCCTTEEEE
T ss_pred CCCCCCCEEE
T ss_conf 9899783788
No 39
>>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.41 E-value=43 Score=12.44 Aligned_cols=11 Identities=18% Similarity=0.589 Sum_probs=5.8
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.||+...
T Consensus 6 ~~LP~GWe~~~ 16 (43)
T 2dmv_A 6 SGLPPGWEQRV 16 (43)
T ss_dssp CSCCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 98998937988
Done!