HHsearch results for GI: 254780837 and protein with PDBid: 1ydx_A
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=100.00 E-value=0 Score=328.17 Aligned_cols=353 Identities=13% Similarity=0.106 Sum_probs=254.0
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf 8988698841239985066788877-----53688700002064123311222234665533784289789994228752
Q gi|254780837|r 22 PKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLR 96 (426)
Q Consensus 22 P~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g 96 (426)
+.+|+++|||+||++.+|+++++.. .++++. .+. ......+.+.+..|||+++..|+ .|
T Consensus 33 ~~~W~~~kLgdi~~i~~G~~~~k~~~~~~G~~pvi~-----~g~----------~~~g~~~~~~~~~~~ili~~~g~-~G 96 (406)
T 1ydx_A 33 NINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFN-----GGV----------KNSGRTDKFNTFKNTISVIVGGS-CG 96 (406)
T ss_dssp SCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEES-----SSS----------SCSCEESCCCBCSSCEEEECBSS-TT
T ss_pred CCCCEEEECCEEEEEECCCCCCHHHCCCCCCEEEEE-----CCC----------CCCEEEEEECCCCCCEEEECCCC-CE
T ss_conf 999789993108999789899741213688679996-----266----------22258733024689889987645-41
Q ss_pred EEEEECCCEEEECCEEEECC---CCCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 37983464899074387146---66787022222111778898883156871666526663445554433-234577999
Q gi|254780837|r 97 KAIIADFDGICSTQFLVLQP---KDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPP-LAEQVLIRE 172 (426)
Q Consensus 97 ~~~i~~~~~~~~~~~~vl~~---~~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPp-l~eQ~kIv~ 172 (426)
.+.+.+.+.++++.++.+++ ..++++||+|+|++. +.++...+.|+++++|+.++|.++.||+|| ++||++||+
T Consensus 97 ~v~~~~~~~~~~~~~~~i~~~~~~~i~~~fL~y~L~s~--~~~i~~~~~Gs~~~~i~~~~l~~~~IplPp~~~EQ~kIa~ 174 (406)
T 1ydx_A 97 YVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQ--QERIEALAFGTTIQNIRISDLKELEIPFTSNKNEQHAIAN 174 (406)
T ss_dssp CEEECSSCBEECTTEEEEEESCTTTSCHHHHHHHHHTT--HHHHHTTCBCSSSCBCCHHHHHHCEEEECCCHHHHHHHHH
T ss_pred EEEEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 68995676477365699996784231898999999999--9999964567751102376783680788776335999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCC---
Q ss_conf 99999998887765433322223688999999998607881000235750006868665643302431013456764---
Q gi|254780837|r 173 KIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNT--- 249 (426)
Q Consensus 173 ~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~~--- 249 (426)
+|+. +|+.|+.+++.++.+++++++++++.|+.. ... ..+ ..++++|++|++.++++++....+...
T Consensus 175 ~L~~----~d~~I~~~~~~i~~l~~l~~~~~~~l~~~~--~~~-~~~---~~~~~~~~~w~~~~l~~i~~~~~g~~~~~~ 244 (406)
T 1ydx_A 175 TLSV----FDERLENLASLIEINRKLRDEYAHKLFSLD--EAF-LSH---WKLEALQSQMHEITLGEIFNFKSGKYLKSE 244 (406)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHH-HHH---TTCTHHHHHCEEEEGGGTEEEEECCCCCGG
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC-CHH---HCCCCCCCCCEEEECCCEEECCCCCCCCHH
T ss_conf 9988----899999999999999999999999986302--342-102---125678755345331001112478866626
Q ss_pred CC-CCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCC--C
Q ss_conf 44-43215774045532465322121000443320242288489974216640379995023566077411143057--7
Q gi|254780837|r 250 KL-IESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKP--H 326 (426)
Q Consensus 250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 326 (426)
.+ .++.+|+++.+..... +. .......+++++...+...+...+. ...++++++++++++ +
T Consensus 245 ~~~~~G~~p~~~~~~~~~~-------~~-----~~~~~~~~~i~i~~~g~~~G~v~~~----~~~~~~~~~~~~i~~~~~ 308 (406)
T 1ydx_A 245 ERLEEGKFPYYGAGIDNTG-------FV-----AEPNTEKDTISIISNGYSLGNIRYH----EIPWFNGTGSIALEPMNN 308 (406)
T ss_dssp GCBSSCSEEEESSSSSCSS-------EE-----SSCSBCSSEEEEECSSTTTTCEEEE----SSCBEECTTEEEEEESST
T ss_pred HHCCCCCEEEEEECCCCCC-------EE-----EEECCCCCCCEEEECCCCEEEEEEE----CCCCCCCCEEEEEEECCC
T ss_conf 6325784479973135673-------47-----7502357761697148730589985----133244565999984255
Q ss_pred CCCHHHHHHHHHCHHHHHHHHH-HCCCEEEEECHHHHHCCEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6886889999709899999986-25840410028898247214-898899999999999999999999999999999999
Q gi|254780837|r 327 GIDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLKFEDVKRLPVL-VPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLK 404 (426)
Q Consensus 327 ~~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~~~~l~~~~i~-lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~ 404 (426)
.+++.|+||+|.+.. ..+.. ..++++++|+.++|.+++|| +||++||++|+++++. +++++...+++++.|+
T Consensus 309 ~i~~~fl~~~l~~~~--~~~~~~~~gs~~~~i~~~~l~~~~ip~iP~~~eQ~~I~~~l~~----i~~~i~~~~~~l~~l~ 382 (406)
T 1ydx_A 309 EIYVPFFYCALKYLQ--KDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIVFL----LDQKLDQYKKELSSLT 382 (406)
T ss_dssp TCCHHHHHHHHHHHH--HHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HHHHHHCCCCCCCEECHHHHCCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_conf 468899999999999--9999864557643087899619671779799999999999999----9999999999999999
Q ss_pred HHHHHHHHHHHCCEEECCCC
Q ss_conf 99999778862233614876
Q gi|254780837|r 405 ERRSSFIAAAVTGQIDLRGE 424 (426)
Q Consensus 405 ~lk~sLl~~a~tGki~V~~~ 424 (426)
++|++||++||.++.++.-+
T Consensus 383 ~lr~~LL~klF~~~~~~~~~ 402 (406)
T 1ydx_A 383 VIRDTLLKKLFPDMTERTKS 402 (406)
T ss_dssp HHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999764865235640