Query gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 426
No_of_seqs 161 out of 3207
Neff 9.1
Searched_HMMs 23785
Date Tue May 31 21:56:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780837.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yf2_A Type I restriction-modi 100.0 0 0 418.1 23.2 395 4-423 2-425 (425)
2 1ydx_A Type I restriction enzy 100.0 0 0 328.2 26.1 353 22-424 33-402 (406)
3 1yf2_A Type I restriction-modi 99.9 5.8E-27 2.4E-31 185.0 10.3 128 77-211 291-421 (425)
4 1ydx_A Type I restriction enzy 99.9 1.5E-24 6.3E-29 170.0 8.9 175 18-208 217-394 (406)
5 2ih2_A Modification methylase 92.9 0.055 2.3E-06 29.5 2.9 82 285-370 325-408 (421)
6 2kr0_A Proteasomal ubiquitin r 68.0 3.9 0.00016 18.0 3.3 41 78-131 76-116 (411)
7 1tk7_A CG4244-PB; WW domain, n 66.7 2.5 0.0001 19.2 2.1 17 14-30 6-22 (88)
8 1r48_A Proline/betaine transpo 42.9 12 0.00052 14.8 4.4 25 389-413 6-30 (33)
9 1i5h_W Rnedd4, ubiquitin ligas 39.9 12 0.00049 15.0 1.9 14 17-30 8-21 (50)
10 2ysd_A Membrane-associated gua 34.4 12 0.00051 14.9 1.3 12 18-29 12-23 (57)
11 3bc1_B Synaptotagmin-like prot 33.2 18 0.00074 13.9 4.4 14 162-175 3-16 (59)
12 2djy_A SMAD ubiquitination reg 32.7 14 0.00058 14.6 1.3 12 18-29 5-16 (42)
13 1y71_A Kinase-associated prote 32.6 17 0.00072 14.0 1.8 53 353-408 72-126 (130)
14 1zke_A Hypothetical protein HP 26.5 23 0.00096 13.2 3.1 13 397-409 65-77 (83)
15 1wmv_A WWOX, WW domain contain 24.3 23 0.00097 13.2 1.3 11 19-29 10-20 (54)
16 2l4j_A YES-associated protein 23.6 26 0.0011 12.8 2.2 13 17-29 8-20 (46)
17 3l4h_A E3 ubiquitin-protein li 23.5 24 0.001 13.0 1.3 11 226-236 71-81 (109)
18 2ysg_A Syntaxin-binding protei 23.0 25 0.0011 12.9 1.3 11 19-29 6-16 (40)
19 2kpz_A E3 ubiquitin-protein li 22.4 25 0.001 12.9 1.1 12 18-29 10-21 (49)
20 2jmf_A E3 ubiquitin-protein li 22.0 25 0.001 13.0 1.0 10 226-235 17-26 (53)
21 2ysf_A E3 ubiquitin-protein li 21.5 28 0.0012 12.6 1.2 12 19-30 6-17 (40)
22 1wr3_A Ubiquitin-protein ligas 21.2 29 0.0012 12.5 1.3 11 19-29 3-13 (36)
23 2r2y_A Protein ADRM1; proteaso 20.6 30 0.0013 12.5 4.6 42 78-132 75-116 (153)
No 1
>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2
Probab=100.00 E-value=0 Score=418.06 Aligned_cols=395 Identities=17% Similarity=0.264 Sum_probs=290.2
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCEEEECCCEEEEEE-CCCCCC-------CCCEEEEEEEEEEECCCEEEECCCCC--CCC
Q ss_conf 77880232589962370689886988412399850-667888-------77536887000020641233112222--346
Q gi|254780837|r 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNT-GRTSES-------GKDIIYIGLEDVESGTGKYLPKDGNS--RQS 73 (426)
Q Consensus 4 ~~~~~~~k~s~~~w~g~iP~~We~~kL~~i~~i~~-g~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 73 (426)
|-+|++||+|+ +|+||+||+++|||+||++.+ |.+|.. +.++++++..++.++........... ...
T Consensus 2 ~~~~~~~~~~~---~~elP~~W~~~kLgdi~~~i~~g~~p~~~~~~~~~~g~ip~i~~~~i~~~~~~~~~~~~~i~~~~~ 78 (425)
T 1yf2_A 2 FYKEENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKYLTNTKIKITEEGL 78 (425)
T ss_dssp EECCCCCBCCS---SSSCBSSCCCEEHHHHEEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTSSSEECCCSEEECHHHH
T ss_pred CCCCCCCCCCC---CCCCCCCCEEEEHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCEEEECHHHH
T ss_conf 88756757798---984798675999479425525787778752101178975899850013687064476089768785
Q ss_pred CCCCEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECH
Q ss_conf 65533784289789994228752379834648990743871466--6787022222111778898883156871666526
Q gi|254780837|r 74 DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADW 151 (426)
Q Consensus 74 ~~~~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~ 151 (426)
.....+.+++||||++++|++ |.+++.+.+++++.+++.++++ ...+.|++|++.+. ..++...++|+++++|+.
T Consensus 79 ~~~~~~~~~~gdili~~~g~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~s~--~~~~~~~~~g~~~~~i~~ 155 (425)
T 1yf2_A 79 NNSNAWIVPKNSVLFAMYGSI-GETAINKIEVATNQAILGIIPKDNILESEFLYYILAKN--KNYYSKLGMQTTQKNLNA 155 (425)
T ss_dssp HTSSCCCBCTTCEEEECSSST-TCEEEESSCBEECSSEEEEEECTTTCCHHHHHHHHHHT--HHHHHCCSSSSSCCCCCH
T ss_pred HHCCCEEECCCCEEEEEECCC-CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCCCH
T ss_conf 120317606994899964588-83001134440025159999562115689999998767--888875245775440728
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 66344555443323457799999999998887765433322223688999999998607881000235750006868665
Q gi|254780837|r 152 KGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDH 231 (426)
Q Consensus 152 ~~l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~ 231 (426)
++|.++.||+||++||++||++|+. +|++|+.++++++.++++++++++++|+++.++....++ .+|++|++
T Consensus 156 ~~l~~~~iplP~l~eQ~~I~~~l~~----~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~p~~ 227 (425)
T 1yf2_A 156 QIVKSFKIPLPPLEEQKQIAKILTK----IDEGIEIIEKSINKLERIKKGLMHKLLTKGIGHSRFKKS----EIGEIPED 227 (425)
T ss_dssp HHHHTCEECCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCEECC----TTSSEETT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCC
T ss_conf 8882510578887999999998766----767777789899999999999999766423575322322----02579876
Q ss_pred CCCCCHHHHCCCCCCCCC-----CC-CCCEEEEECCCCCCCCCCC----CCCCEE---CCCCCCCEEECCCCEEEEEECC
Q ss_conf 643302431013456764-----44-4321577404553246532----212100---0443320242288489974216
Q gi|254780837|r 232 WEVKPFFALVTELNRKNT-----KL-IESNILSLSYGNIIQKLET----RNMGLK---PESYETYQIVDPGEIVFRFIDL 298 (426)
Q Consensus 232 W~~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~gdil~~~~~~ 298 (426)
|++++|++++....+... ++ ..+.++.+...++...... ...... ......+..+..||++++..+.
T Consensus 228 w~~~~l~~i~~~~~g~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~ 307 (425)
T 1yf2_A 228 WEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSIIISTRAP 307 (425)
T ss_dssp CEEEEHHHHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCEEEECSSS
T ss_pred CEEEEHHHEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEECCCCCEEECHHHHCCCCCCCCCCCCEEEEEECC
T ss_conf 44778225699967998875665434678602573133345577504157633412444122332102589889985301
Q ss_pred CCCEEEEEEECCCCCEEEECH-H-EEC-CCCCCCHHHHHHHHHCHHHHHHHHHH-CCCEEEEECHHHHHCCEECCCCHHH
Q ss_conf 640379995023566077411-1-430-57768868899997098999999862-5840410028898247214898899
Q gi|254780837|r 299 QNDKRSLRSAQVMERGIITSA-Y-MAV-KPHGIDSTYLAWLMRSYDLCKVFYAM-GSGLRQSLKFEDVKRLPVLVPPIKE 374 (426)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~yl~~~l~s~~~~~~~~~~-~~g~~~~i~~~~l~~~~i~lP~lee 374 (426)
.+..+.+. ..+..+.+ . +.. ..+.+++.|++|+|++. +.++... .++++++|+.++|.+++||+||++|
T Consensus 308 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~--~~~~~~~~~gs~~~~i~~~~l~~~~ipiP~~~e 380 (425)
T 1yf2_A 308 VGYVAVLT-----VESTFNQGCKGLFQKNNDSVNTEFYAYYLKFK--KNLLENLSGGSTFKELSKSMLENFKIPLPPLEE 380 (425)
T ss_dssp TTCEEEES-----SCBEECTTEEEEEESCTTSCCHHHHHHHHHHT--HHHHHHHHCSSSSCCCCHHHHHHCEEEECCHHH
T ss_pred CCCEEEEE-----CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHCCEECCCEECHHHHCCCEEECCCHHH
T ss_conf 35314531-----13321100134442046644789999999999--999998667013216988994673882879999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCC
Q ss_conf 9999999999999999999999999999999999977886223361487
Q gi|254780837|r 375 QFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLRG 423 (426)
Q Consensus 375 Q~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~tGki~V~~ 423 (426)
|++|++.++. ++++++..+++++.|+++|++||++|||||+|||-
T Consensus 381 Q~~I~~~l~~----~~~~i~~~~~~~~~l~~lk~~LL~~~~tGel~v~~ 425 (425)
T 1yf2_A 381 QKQIAKILSS----VDKSIELKKQKKEKLQRMKKKIMELLLTGKVRVKT 425 (425)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEECC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECC
T ss_conf 9999999999----99999999999999999999999998484068509
No 2
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=100.00 E-value=0 Score=328.17 Aligned_cols=353 Identities=13% Similarity=0.106 Sum_probs=254.0
Q ss_pred CCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCC
Q ss_conf 8988698841239985066788877-----53688700002064123311222234665533784289789994228752
Q gi|254780837|r 22 PKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLR 96 (426)
Q Consensus 22 P~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g 96 (426)
+.+|+++|||+||++.+|+++++.. .++++. .+. ......+.+.+..|||+++..|+ .|
T Consensus 33 ~~~W~~~kLgdi~~i~~G~~~~k~~~~~~G~~pvi~-----~g~----------~~~g~~~~~~~~~~~ili~~~g~-~G 96 (406)
T 1ydx_A 33 NINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFN-----GGV----------KNSGRTDKFNTFKNTISVIVGGS-CG 96 (406)
T ss_dssp SCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEES-----SSS----------SCSCEESCCCBCSSCEEEECBSS-TT
T ss_pred CCCCEEEECCEEEEEECCCCCCHHHCCCCCCEEEEE-----CCC----------CCCEEEEEECCCCCCEEEECCCC-CE
T ss_conf 999789993108999789899741213688679996-----266----------22258733024689889987645-41
Q ss_pred EEEEECCCEEEECCEEEECC---CCCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 37983464899074387146---66787022222111778898883156871666526663445554433-234577999
Q gi|254780837|r 97 KAIIADFDGICSTQFLVLQP---KDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPP-LAEQVLIRE 172 (426)
Q Consensus 97 ~~~i~~~~~~~~~~~~vl~~---~~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplPp-l~eQ~kIv~ 172 (426)
.+.+.+.+.++++.++.+++ ..++++||+|+|++. +.++...+.|+++++|+.++|.++.||+|| ++||++||+
T Consensus 97 ~v~~~~~~~~~~~~~~~i~~~~~~~i~~~fL~y~L~s~--~~~i~~~~~Gs~~~~i~~~~l~~~~IplPp~~~EQ~kIa~ 174 (406)
T 1ydx_A 97 YVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQ--QERIEALAFGTTIQNIRISDLKELEIPFTSNKNEQHAIAN 174 (406)
T ss_dssp CEEECSSCBEECTTEEEEEESCTTTSCHHHHHHHHHTT--HHHHHTTCBCSSSCBCCHHHHHHCEEEECCCHHHHHHHHH
T ss_pred EEEEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 68995676477365699996784231898999999999--9999964567751102376783680788776335999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCC---
Q ss_conf 99999998887765433322223688999999998607881000235750006868665643302431013456764---
Q gi|254780837|r 173 KIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNT--- 249 (426)
Q Consensus 173 ~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L~p~~~~k~s~~e~lG~IP~~W~~~~l~~~~~~~~~~~~--- 249 (426)
+|+. +|+.|+.+++.++.+++++++++++.|+.. ... ..+ ..++++|++|++.++++++....+...
T Consensus 175 ~L~~----~d~~I~~~~~~i~~l~~l~~~~~~~l~~~~--~~~-~~~---~~~~~~~~~w~~~~l~~i~~~~~g~~~~~~ 244 (406)
T 1ydx_A 175 TLSV----FDERLENLASLIEINRKLRDEYAHKLFSLD--EAF-LSH---WKLEALQSQMHEITLGEIFNFKSGKYLKSE 244 (406)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHH-HHH---TTCTHHHHHCEEEEGGGTEEEEECCCCCGG
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCC-CHH---HCCCCCCCCCEEEECCCEEECCCCCCCCHH
T ss_conf 9988----899999999999999999999999986302--342-102---125678755345331001112478866626
Q ss_pred CC-CCCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCC--C
Q ss_conf 44-43215774045532465322121000443320242288489974216640379995023566077411143057--7
Q gi|254780837|r 250 KL-IESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKP--H 326 (426)
Q Consensus 250 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 326 (426)
.+ .++.+|+++.+..... +. .......+++++...+...+...+. ...++++++++++++ +
T Consensus 245 ~~~~~G~~p~~~~~~~~~~-------~~-----~~~~~~~~~i~i~~~g~~~G~v~~~----~~~~~~~~~~~~i~~~~~ 308 (406)
T 1ydx_A 245 ERLEEGKFPYYGAGIDNTG-------FV-----AEPNTEKDTISIISNGYSLGNIRYH----EIPWFNGTGSIALEPMNN 308 (406)
T ss_dssp GCBSSCSEEEESSSSSCSS-------EE-----SSCSBCSSEEEEECSSTTTTCEEEE----SSCBEECTTEEEEEESST
T ss_pred HHCCCCCEEEEEECCCCCC-------EE-----EEECCCCCCCEEEECCCCEEEEEEE----CCCCCCCCEEEEEEECCC
T ss_conf 6325784479973135673-------47-----7502357761697148730589985----133244565999984255
Q ss_pred CCCHHHHHHHHHCHHHHHHHHH-HCCCEEEEECHHHHHCCEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6886889999709899999986-25840410028898247214-898899999999999999999999999999999999
Q gi|254780837|r 327 GIDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLKFEDVKRLPVL-VPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLK 404 (426)
Q Consensus 327 ~~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~~~~l~~~~i~-lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~ 404 (426)
.+++.|+||+|.+.. ..+.. ..++++++|+.++|.+++|| +||++||++|+++++. +++++...+++++.|+
T Consensus 309 ~i~~~fl~~~l~~~~--~~~~~~~~gs~~~~i~~~~l~~~~ip~iP~~~eQ~~I~~~l~~----i~~~i~~~~~~l~~l~ 382 (406)
T 1ydx_A 309 EIYVPFFYCALKYLQ--KDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIVFL----LDQKLDQYKKELSSLT 382 (406)
T ss_dssp TCCHHHHHHHHHHHH--HHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HHHHHHCCCCCCCEECHHHHCCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_conf 468899999999999--9999864557643087899619671779799999999999999----9999999999999999
Q ss_pred HHHHHHHHHHHCCEEECCCC
Q ss_conf 99999778862233614876
Q gi|254780837|r 405 ERRSSFIAAAVTGQIDLRGE 424 (426)
Q Consensus 405 ~lk~sLl~~a~tGki~V~~~ 424 (426)
++|++||++||.++.++.-+
T Consensus 383 ~lr~~LL~klF~~~~~~~~~ 402 (406)
T 1ydx_A 383 VIRDTLLKKLFPDMTERTKS 402 (406)
T ss_dssp HHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999764865235640
No 3
>1yf2_A Type I restriction-modification enzyme, S subunit; structural genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii DSM2661} SCOP: d.287.1.2 d.287.1.2
Probab=99.94 E-value=5.8e-27 Score=185.02 Aligned_cols=128 Identities=20% Similarity=0.305 Sum_probs=58.2
Q ss_pred CEEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEE-ECC-C-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHH
Q ss_conf 3378428978999422875237983464899074387-146-6-678702222211177889888315687166652666
Q gi|254780837|r 77 TVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV-LQP-K-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKG 153 (426)
Q Consensus 77 ~~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~v-l~~-~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~ 153 (426)
....+..|||++++.|+.++.+.+. .+..+..+... +++ + .+.+.||+|+|++ ++.++...++|+++++|+.++
T Consensus 291 ~~~~~~~gdil~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~--~~~~~~~~~~gs~~~~i~~~~ 367 (425)
T 1yf2_A 291 NLNLIPKGSIIISTRAPVGYVAVLT-VESTFNQGCKGLFQKNNDSVNTEFYAYYLKF--KKNLLENLSGGSTFKELSKSM 367 (425)
T ss_dssp TCCCBCTTCEEEECSSSTTCEEEES-SCBEECTTEEEEEESCTTSCCHHHHHHHHHH--THHHHHHHHCSSSSCCCCHHH
T ss_pred CCCCCCCCCEEEEEECCCCCEEEEE-CCCCCCEEEEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHCCEECCCEECHHH
T ss_conf 3210258988998530135314531-1332110013444204664478999999999--999999866701321698899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3445554433234577999999999988877654333222236889999999986078
Q gi|254780837|r 154 IGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGL 211 (426)
Q Consensus 154 l~~~~iplPpl~eQ~kIv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk~L 211 (426)
|.+++||+||++||++||++|+. +|++++..++.++.|+++|+++|++|||+++
T Consensus 368 l~~~~ipiP~~~eQ~~I~~~l~~----~~~~i~~~~~~~~~l~~lk~~LL~~~~tGel 421 (425)
T 1yf2_A 368 LENFKIPLPPLEEQKQIAKILSS----VDKSIELKKQKKEKLQRMKKKIMELLLTGKV 421 (425)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HCCCEEECCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 46738828799999999999999----9999999999999999999999999848406
No 4
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=99.91 E-value=1.5e-24 Score=169.98 Aligned_cols=175 Identities=13% Similarity=0.149 Sum_probs=114.0
Q ss_pred CCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCCCCE
Q ss_conf 37068988698841239985066788877536887000020641233112222346655337842897899942287523
Q gi|254780837|r 18 IGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRK 97 (426)
Q Consensus 18 ~g~iP~~We~~kL~~i~~i~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~~g~ 97 (426)
++.+|++|++++|+++|++.+|.++...... ..+..++... ..........+.++.+|+++++.|+..|.
T Consensus 217 ~~~~~~~w~~~~l~~i~~~~~g~~~~~~~~~--------~~G~~p~~~~--~~~~~~~~~~~~~~~~~i~i~~~g~~~G~ 286 (406)
T 1ydx_A 217 LEALQSQMHEITLGEIFNFKSGKYLKSEERL--------EEGKFPYYGA--GIDNTGFVAEPNTEKDTISIISNGYSLGN 286 (406)
T ss_dssp CTHHHHHCEEEEGGGTEEEEECCCCCGGGCB--------SSCSEEEESS--SSSCSSEESSCSBCSSEEEEECSSTTTTC
T ss_pred CCCCCCCCEEEECCCEEECCCCCCCCHHHHC--------CCCCEEEEEE--CCCCCCEEEEECCCCCCCEEEECCCCEEE
T ss_conf 5678755345331001112478866626632--------5784479973--13567347750235776169714873058
Q ss_pred EEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 79834648990743871466--6787022222111778898883156871666526663445554-43323457799999
Q gi|254780837|r 98 AIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMP-IPPLAEQVLIREKI 174 (426)
Q Consensus 98 ~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~ip-lPpl~eQ~kIv~~L 174 (426)
+.+.+.+++++++++++++. ++++.|++|+|.+ +...+...++|+++++|+.++|.+++|| +||++||++|+++|
T Consensus 287 v~~~~~~~~~~~~~~~i~~~~~~i~~~fl~~~l~~--~~~~~~~~~~gs~~~~i~~~~l~~~~ip~iP~~~eQ~~I~~~l 364 (406)
T 1ydx_A 287 IRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKY--LQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIV 364 (406)
T ss_dssp EEEESSCBEECTTEEEEEESSTTCCHHHHHHHHHH--HHHHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCEECHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99851332445659999842554688999999999--9999998645576430878996196717797999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988877654333222236889999999986
Q gi|254780837|r 175 IAETVRIDTLITERIRFIELLKEKKQALVSYIVT 208 (426)
Q Consensus 175 d~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~t 208 (426)
+ .+|+.|...++.++.|+++|+++|+++|+
T Consensus 365 ~----~i~~~i~~~~~~l~~l~~lr~~LL~klF~ 394 (406)
T 1ydx_A 365 F----LLDQKLDQYKKELSSLTVIRDTLLKKLFP 394 (406)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9----99999999999999999999999997648
No 5
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=92.89 E-value=0.055 Score=29.49 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=51.3
Q ss_pred EECCCCEEEEEECCCCCEEEEEEECCCCCEEEECHHEECCCC--CCCHHHHHHHHHCHHHHHHHHHHCCCEEEEECHHHH
Q ss_conf 422884899742166403799950235660774111430577--688688999970989999998625840410028898
Q gi|254780837|r 285 IVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH--GIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDV 362 (426)
Q Consensus 285 ~~~~gdil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~yl~~~l~s~~~~~~~~~~~~g~~~~i~~~~l 362 (426)
......+++............ .....+++..+..+..+ .+++.||..+|+|.....++....++..++++...+
T Consensus 325 ~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~L~~~LNS~~~~~~~~~~~~~~~~~i~~~~l 400 (421)
T 2ih2_A 325 FYATPHLVVAHTKGTRVVAAW----DERAYPWREEFHLLPKEGVRLDPSSLVQWLNSEAMQKHVRTLYRDFVPHLTLRML 400 (421)
T ss_dssp GGGSCEEEECSSSSSSCCEEE----ESSCCCBSSSEEEEECTTEEECHHHHHHHHTSHHHHHHHHHHHTTSSSSCCHHHH
T ss_pred HHHCCCEEEEEECCCCEEEEE----CCCCEEECCEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 851888999974488389998----7899897557999956998750999999975099999999865888740279999
Q ss_pred HCCEECCC
Q ss_conf 24721489
Q gi|254780837|r 363 KRLPVLVP 370 (426)
Q Consensus 363 ~~~~i~lP 370 (426)
++++||=+
T Consensus 401 ~~lPI~~~ 408 (421)
T 2ih2_A 401 ERLPVRRE 408 (421)
T ss_dssp TTCEECTT
T ss_pred HHCCCCCC
T ss_conf 86889888
No 6
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=68.03 E-value=3.9 Score=17.95 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=24.6
Q ss_pred EEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEEECCCCCCCHHHHHHHCHH
Q ss_conf 378428978999422875237983464899074387146667870222221117
Q gi|254780837|r 78 VSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSI 131 (426)
Q Consensus 78 ~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~vl~~~~~~~~fl~y~l~s~ 131 (426)
..++.+||..|.++-. |-+..+++|+.+.-..+ +|||++.+
T Consensus 76 d~i~~p~~~~f~~v~~------------c~~gRv~~Lkf~~~~~~-~ffWmQ~~ 116 (411)
T 2kr0_A 76 DLIIFPDDCEFKRVPQ------------CPSGRVYVLKFKAGSKR-LFFWMQEP 116 (411)
T ss_dssp EEEECTTSEEEEECTT------------CSSSCEEEEEETTTCCE-EEEEECCS
T ss_pred CEEECCCCEEEEECCC------------CCCCEEEEEEECCCCCC-EEEEEECC
T ss_conf 4677589648997777------------89874899995789862-68994059
No 7
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=66.66 E-value=2.5 Score=19.22 Aligned_cols=17 Identities=18% Similarity=0.476 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCEEEEC
Q ss_conf 99623706898869884
Q gi|254780837|r 14 GVQWIGAIPKHWKVVPI 30 (426)
Q Consensus 14 ~~~w~g~iP~~We~~kL 30 (426)
-+++||.||.||+...=
T Consensus 6 ~~d~~gpLP~GWe~~~d 22 (88)
T 1tk7_A 6 HMDALGPLPDGWEKKIQ 22 (88)
T ss_dssp CSSTTSSSSSSCCEEEE
T ss_pred CCCCCCCCCCCCEEEEC
T ss_conf 67878989998688888
No 8
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=42.90 E-value=12 Score=14.85 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997788
Q gi|254780837|r 389 IDVLVEKIEQSIVLLKERRSSFIAA 413 (426)
Q Consensus 389 id~li~~~~~~i~~L~~lk~sLl~~ 413 (426)
|++.|+.+.++|..|++-|+.|..+
T Consensus 6 IEqKIedId~qIaeLe~KR~~Lv~Q 30 (33)
T 1r48_A 6 IEQKIDDIDHEIADLQAKRTRLVQQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998987999999999999999873
No 9
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=39.92 E-value=12 Score=14.99 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=8.2
Q ss_pred CCCCCCCCCEEEEC
Q ss_conf 23706898869884
Q gi|254780837|r 17 WIGAIPKHWKVVPI 30 (426)
Q Consensus 17 w~g~iP~~We~~kL 30 (426)
.+|+||.|||...=
T Consensus 8 ~~~pLP~GWe~~~d 21 (50)
T 1i5h_W 8 DLGPLPPGWEERTH 21 (50)
T ss_dssp CCSSCSTTEEEEEC
T ss_pred CCCCCCCCCEEEEC
T ss_conf 65989989468888
No 10
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=34.40 E-value=12 Score=14.87 Aligned_cols=12 Identities=25% Similarity=1.013 Sum_probs=5.8
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
+++||.||+...
T Consensus 12 ~~pLP~GWe~~~ 23 (57)
T 2ysd_A 12 LGPLPENWEMAY 23 (57)
T ss_dssp CCSCCSSEEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 788998868878
No 11
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=33.18 E-value=18 Score=13.89 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 33234577999999
Q gi|254780837|r 162 PPLAEQVLIREKII 175 (426)
Q Consensus 162 Ppl~eQ~kIv~~Ld 175 (426)
|..+||..|..+|.
T Consensus 3 ~~~EE~e~Il~VL~ 16 (59)
T 3bc1_B 3 PEFEEQEAIMKVLQ 16 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 10889999999998
No 12
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens}
Probab=32.68 E-value=14 Score=14.56 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=7.4
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.||+...
T Consensus 5 ~~pLP~GWe~~~ 16 (42)
T 2djy_A 5 SGPLPPGWEIRN 16 (42)
T ss_dssp CSCCCSSEEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 698999977878
No 13
>1y71_A Kinase-associated protein B; structural genomics, midwest center for structural genomics, MCSG, protein structure initiative, PSI; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=32.59 E-value=17 Score=13.96 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=27.7
Q ss_pred EEEEECHHHHHCCEECCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0410028898247214898899--9999999999999999999999999999999999
Q gi|254780837|r 353 LRQSLKFEDVKRLPVLVPPIKE--QFDITNVINVETARIDVLVEKIEQSIVLLKERRS 408 (426)
Q Consensus 353 ~~~~i~~~~l~~~~i~lP~lee--Q~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~ 408 (426)
-+.++....++.+..-+|+.++ |+.+....+.+.. .--+-.++.++.|++||+
T Consensus 72 Ek~~ip~~~vk~y~geipdY~~SLq~A~~~~~~~L~~---~~s~~a~~sL~~L~~Lkk 126 (130)
T 1y71_A 72 EQTNIPEQMVKKYEGEIPDYTESLKLALETQMNSFSE---DDSPFAERSLETLQQLKK 126 (130)
T ss_dssp CEEEEEGGGEEECCSCCCCHHHHHHHHHHHHHHTTTT---CCSHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHH
T ss_conf 8853988765026788899799999999999987423---233999999999999998
No 14
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural genomics, PSI, protein structure initiative; 1.60A {Helicobacter pylori 26695} SCOP: a.30.6.1
Probab=26.54 E-value=23 Score=13.18 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780837|r 397 EQSIVLLKERRSS 409 (426)
Q Consensus 397 ~~~i~~L~~lk~s 409 (426)
.++|+.|+.+|+.
T Consensus 65 K~~IdaLNKiKke 77 (83)
T 1zke_A 65 KELINALNKIKKG 77 (83)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999888
No 15
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=24.32 E-value=23 Score=13.15 Aligned_cols=11 Identities=27% Similarity=0.767 Sum_probs=5.2
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.||+...
T Consensus 10 ~~LP~GWe~~~ 20 (54)
T 1wmv_A 10 GDLPYGWEQET 20 (54)
T ss_dssp SCSCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 98899926878
No 16
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=23.64 E-value=26 Score=12.85 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=7.8
Q ss_pred CCCCCCCCCEEEE
Q ss_conf 2370689886988
Q gi|254780837|r 17 WIGAIPKHWKVVP 29 (426)
Q Consensus 17 w~g~iP~~We~~k 29 (426)
..++||.||+...
T Consensus 8 ~~~pLP~GWe~~~ 20 (46)
T 2l4j_A 8 ASGPLPEGWEQAI 20 (46)
T ss_dssp TTSCCCTTCEEEE
T ss_pred CCCCCCCCCEEEE
T ss_conf 8898998856878
No 17
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=23.53 E-value=24 Score=13.01 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=8.9
Q ss_pred CCCCCCCCCCC
Q ss_conf 86866564330
Q gi|254780837|r 226 GLVPDHWEVKP 236 (426)
Q Consensus 226 G~IP~~W~~~~ 236 (426)
++.|.||+.+.
T Consensus 71 ~pLP~GWe~~~ 81 (109)
T 3l4h_A 71 LELPRGWEIKT 81 (109)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 97997847888
No 18
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=23.03 E-value=25 Score=12.91 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=6.2
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
++||.||+...
T Consensus 6 ~~LP~GWe~~~ 16 (40)
T 2ysg_A 6 SGLPYGWEEAY 16 (40)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 98999946889
No 19
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A
Probab=22.40 E-value=25 Score=12.95 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=5.6
Q ss_pred CCCCCCCCEEEE
Q ss_conf 370689886988
Q gi|254780837|r 18 IGAIPKHWKVVP 29 (426)
Q Consensus 18 ~g~iP~~We~~k 29 (426)
.++||.|||...
T Consensus 10 ~~pLP~GWe~~~ 21 (49)
T 2kpz_A 10 QGFLPKGWEVRH 21 (49)
T ss_dssp --CCCTTEEEEE
T ss_pred CCCCCCCCCEEE
T ss_conf 598997810678
No 20
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=22.03 E-value=25 Score=12.99 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q ss_conf 8686656433
Q gi|254780837|r 226 GLVPDHWEVK 235 (426)
Q Consensus 226 G~IP~~W~~~ 235 (426)
|.+|.||+.+
T Consensus 17 ~pLP~GWe~~ 26 (53)
T 2jmf_A 17 GPLPPGWEIR 26 (53)
T ss_dssp SCCCTTEEEE
T ss_pred CCCCCCCEEE
T ss_conf 9899883588
No 21
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=21.52 E-value=28 Score=12.64 Aligned_cols=12 Identities=17% Similarity=0.603 Sum_probs=6.5
Q ss_pred CCCCCCCEEEEC
Q ss_conf 706898869884
Q gi|254780837|r 19 GAIPKHWKVVPI 30 (426)
Q Consensus 19 g~iP~~We~~kL 30 (426)
++||.||+...-
T Consensus 6 ~~LP~GWe~~~~ 17 (40)
T 2ysf_A 6 SGLPEGWEMRFT 17 (40)
T ss_dssp CCCCSSEEEEEC
T ss_pred CCCCCCCEEEEC
T ss_conf 989989168898
No 22
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=21.23 E-value=29 Score=12.55 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=6.3
Q ss_pred CCCCCCCEEEE
Q ss_conf 70689886988
Q gi|254780837|r 19 GAIPKHWKVVP 29 (426)
Q Consensus 19 g~iP~~We~~k 29 (426)
+.||.||+...
T Consensus 3 ~pLP~GWe~~~ 13 (36)
T 1wr3_A 3 PPLPPGWEEKV 13 (36)
T ss_dssp SCSCTTEEEEE
T ss_pred CCCCCCCEEEE
T ss_conf 76799877979
No 23
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, ubiquitin-proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=20.61 E-value=30 Score=12.46 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=22.6
Q ss_pred EEEECCCCEEEEEECCCCCEEEEECCCEEEECCEEEECCCCCCCHHHHHHHCHHH
Q ss_conf 3784289789994228752379834648990743871466678702222211177
Q gi|254780837|r 78 VSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSID 132 (426)
Q Consensus 78 ~~~~~~gDil~s~~g~~~g~~~i~~~~~~~~~~~~vl~~~~~~~~fl~y~l~s~~ 132 (426)
..++.+||..|.++-. +-+..+++|+.++...+ ++|||+.+.
T Consensus 75 d~ii~Pgd~~f~~V~~------------c~tGRVyvLkF~ss~~r-~FFWmQe~~ 116 (153)
T 2r2y_A 75 DLIIFPDDCEFKRVPQ------------CPSGRVYVLKFKAGSKR-LFFWMQEPK 116 (153)
T ss_dssp EEECCTTSEEEEECTT------------CTTSCEEEEEETTTCCE-EEEEECSSS
T ss_pred CEEECCCCEEEEECCC------------CCCCEEEEEEECCCCCE-EEEECCCCC
T ss_conf 5888399649998776------------89974999995689832-789915799
Done!