HHSEARCH alignment of GI: 254780837 and SCOP domain: d1ydxa1

Alignment
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=99.91  E-value=2.7e-24  Score=166.92  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=124.7

Q ss_pred             CCCCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEECCC
Q ss_conf             068988698841239985066788877-----536887000020641233112222346655337842897899942287
Q gi|254780837|r   20 AIPKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPY   94 (426)
Q Consensus        20 ~iP~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g~~   94 (426)
                      ..|++|++++||++|++.+|.++++..     .+++++...               ........+.+..+|++++..|++
T Consensus         8 ~~~~~W~~~~Lg~i~~i~~G~~~~~~~~~~~g~~p~~~~~~---------------~~~~~~~~~~~~~~~il~~~~g~~   72 (193)
T d1ydxa1           8 NNNINWTKRTIDSLFDLKKGEMLEKELITPEGKYEYFNGGV---------------KNSGRTDKFNTFKNTISVIVGGSC   72 (193)
T ss_dssp             SSSCCCEEEEHHHHEEEEECCCCCGGGCCTTCSEEEESSSS---------------SCSCEESCCCBCSSCEEEECBSST
T ss_pred             CCCCCCEEEEEEEEEEEECCCCCCHHHCCCCCCEEEEEEEC---------------CCCCEEEEEEECCCCEEEEECCCC
T ss_conf             99999899993179999589889864504578768997300---------------003236677531771799832654


Q ss_pred             CCEEEEECCCEEEECCEEEEC--CC-CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             523798346489907438714--66-678702222211177889888315687166652666344555443-32345779
Q gi|254780837|r   95 LRKAIIADFDGICSTQFLVLQ--PK-DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIP-PLAEQVLI  170 (426)
Q Consensus        95 ~g~~~i~~~~~~~~~~~~vl~--~~-~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~iplP-pl~eQ~kI  170 (426)
                      |..+ +......++.+..+++  .+ .+++.|++|++.  .+..++...++|+++++|+.++++++.||+| |++||++|
T Consensus        73 g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~--~~~~~~~~~~~gs~~~~i~~~~i~~~~i~lpP~~~eQ~~I  149 (193)
T d1ydxa1          73 GYVR-LADKNFFCGQSNCTLNLLDPLELDLKFAYYALK--SQQERIEALAFGTTIQNIRISDLKELEIPFTSNKNEQHAI  149 (193)
T ss_dssp             TCEE-ECSSCBEECTTEEEEEESCTTTSCHHHHHHHHH--TTHHHHHTTCBCSSSCBCCHHHHHHCEEEECCCHHHHHHH
T ss_pred             CCEE-EECCCCCCCCCEEEEEECCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCHHHHHHH
T ss_conf             5214-304432013643799966833246899876666--6899988750577553421988988776652269999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999888776543332222368899999999860
Q gi|254780837|r  171 REKIIAETVRIDTLITERIRFIELLKEKKQALVSYIVTK  209 (426)
Q Consensus       171 v~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~tk  209 (426)
                      |++|+.    +|++|+.+++.++.|+++++++++++|+.
T Consensus       150 ~~~l~~----ld~~i~~~~~~i~~l~~~~~~ll~~lft~  184 (193)
T d1ydxa1         150 ANTLSV----FDERLENLASLIEINRKLRDEYAHKLFSL  184 (193)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999----99999999999999999999999998766


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MG438
species: Mycoplasma genitalium [TaxId: 2097]