HHSEARCH alignment of GI: 254780837 and SCOP domain: d1ydxa2

Alignment
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=99.92  E-value=6e-26  Score=177.23  Aligned_cols=169  Identities=13%  Similarity=0.132  Sum_probs=135.5

Q ss_pred             CCCCCCCCEEEECCCEEEEEECCCCCCCC-----CEEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCEEEEEEC
Q ss_conf             37068988698841239985066788877-----5368870000206412331122223466553378428978999422
Q gi|254780837|r   18 IGAIPKHWKVVPIKRFTKLNTGRTSESGK-----DIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKGQILYGKLG   92 (426)
Q Consensus        18 ~g~iP~~We~~kL~~i~~i~~g~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gDil~s~~g   92 (426)
                      |..+|++|+.++|||+|++.+|+++++.+     .+++++..+..               .+....+....+++++++.|
T Consensus         1 ~~~~~~~w~~v~Lgdi~~~~~G~~~~~~~~~~~G~~p~i~~~~~~---------------~~~~~~~~~~~~~i~i~~~g   65 (181)
T d1ydxa2           1 LEALQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDN---------------TGFVAEPNTEKDTISIISNG   65 (181)
T ss_dssp             CTHHHHHCEEEEGGGTEEEEECCCCCGGGCBSSCSEEEESSSSSC---------------SSEESSCSBCSSEEEEECSS
T ss_pred             CCCCCCCEEEEEHHHEEEEECCCCCCHHHHCCCCCEEEEEECCCC---------------CCEEEEEECCCCCEEEEECC
T ss_conf             977258638999445899948998874440368886899813404---------------20355301026745998447


Q ss_pred             CCCCEEEEECCCEEEECCEEEECCC--CCCCHHHHHHHCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHH-HHHHHHHH
Q ss_conf             8752379834648990743871466--67870222221117788988831568716665266634455544-33234577
Q gi|254780837|r   93 PYLRKAIIADFDGICSTQFLVLQPK--DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPI-PPLAEQVL  169 (426)
Q Consensus        93 ~~~g~~~i~~~~~~~~~~~~vl~~~--~~~~~fl~y~l~s~~~~~~~~~~~~Gs~~~~i~~~~l~~~~ipl-Ppl~eQ~k  169 (426)
                      +.+|.+.+....+.++.+.+++++.  ++++.|++|||.+  +..++...++|+++++++..+++++.+|+ ||++||++
T Consensus        66 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~i~~~fl~y~l~~--~~~~~~~~~~g~~~~~~~~~~l~~~~i~~~P~l~eQ~~  143 (181)
T d1ydxa2          66 YSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKY--LQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRK  143 (181)
T ss_dssp             TTTTCEEEESSCBEECTTEEEEEESSTTCCHHHHHHHHHH--HHHHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHH--HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             6456325644664302635886146765468899998888--88888875257742350588998765301688999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998887765433322223688999999998
Q gi|254780837|r  170 IREKIIAETVRIDTLITERIRFIELLKEKKQALVSYIV  207 (426)
Q Consensus       170 Iv~~Ld~~~~~Id~~I~~~~~~i~~l~e~kqali~~~~  207 (426)
                      ||++|+    .+|++|+.+++.++.|+++|+++++++|
T Consensus       144 I~~~l~----~~d~~i~~~~~~i~~l~~lk~~Ll~~lF  177 (181)
T d1ydxa2         144 AGKIVF----LLDQKLDQYKKELSSLTVIRDTLLKKLF  177 (181)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999----9999999999999999999999999971


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MG438
species: Mycoplasma genitalium [TaxId: 2097]