HHSEARCH alignment of GI: 254780837 and SCOP domain: d1ydxa2

Alignment
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=99.82  E-value=1.7e-19  Score=137.11  Aligned_cols=167  Identities=10%  Similarity=0.038  Sum_probs=118.0

Q ss_pred             CCCCCCCCCHHHHCCCCCCC---CCCCC-CCEEEEECCCCCCCCCCCCCCCEECCCCCCCEEECCCCEEEEEECCCCCEE
Q ss_conf             86656433024310134567---64444-321577404553246532212100044332024228848997421664037
Q gi|254780837|r  228 VPDHWEVKPFFALVTELNRK---NTKLI-ESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKR  303 (426)
Q Consensus       228 IP~~W~~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdil~~~~~~~~~~~  303 (426)
                      +|.+|+.++|+++++..+++   +.++. ++.+|+++.++......            .......+++++...+...+..
T Consensus         4 ~~~~w~~v~Lgdi~~~~~G~~~~~~~~~~~G~~p~i~~~~~~~~~~------------~~~~~~~~~i~i~~~g~~ig~~   71 (181)
T d1ydxa2           4 LQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDNTGFV------------AEPNTEKDTISIISNGYSLGNI   71 (181)
T ss_dssp             HHHHCEEEEGGGTEEEEECCCCCGGGCBSSCSEEEESSSSSCSSEE------------SSCSBCSSEEEEECSSTTTTCE
T ss_pred             CCCCEEEEEHHHEEEEECCCCCCHHHHCCCCCEEEEEECCCCCCEE------------EEEECCCCCEEEEECCCCCCCE
T ss_conf             2586389994458999489988744403688868998134042035------------5301026745998447645632


Q ss_pred             EEEEECCCCCEEEECHHEECCC--CCCCHHHHHHHHHCHHHHHHHHH-HCCCEEEEECHHHHHCCEECC-CCHHHHHHHH
Q ss_conf             9995023566077411143057--76886889999709899999986-258404100288982472148-9889999999
Q gi|254780837|r  304 SLRSAQVMERGIITSAYMAVKP--HGIDSTYLAWLMRSYDLCKVFYA-MGSGLRQSLKFEDVKRLPVLV-PPIKEQFDIT  379 (426)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~yl~~~l~s~~~~~~~~~-~~~g~~~~i~~~~l~~~~i~l-P~leeQ~~I~  379 (426)
                      ...    ...+.++.+.+++++  +.+++.|++|+|++..  .++.. ..++++++++..+++++.+|+ ||++||++|+
T Consensus        72 ~~~----~~~~~~~~~~~~~~~~~~~i~~~fl~y~l~~~~--~~~~~~~~g~~~~~~~~~~l~~~~i~~~P~l~eQ~~I~  145 (181)
T d1ydxa2          72 RYH----EIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQ--KDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAG  145 (181)
T ss_dssp             EEE----SSCBEECTTEEEEEESSTTCCHHHHHHHHHHHH--HHHHHHHHHHTSCCCCHHHHHTCEEEECSCHHHHHHHH
T ss_pred             EEE----CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             564----466430263588614676546889999888888--88887525774235058899876530168899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999997788622
Q gi|254780837|r  380 NVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVT  416 (426)
Q Consensus       380 ~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~t  416 (426)
                      ++++    .+|++|+..+++++.|+++|++||+++|.
T Consensus       146 ~~l~----~~d~~i~~~~~~i~~l~~lk~~Ll~~lF~  178 (181)
T d1ydxa2         146 KIVF----LLDQKLDQYKKELSSLTVIRDTLLKKLFP  178 (181)
T ss_dssp             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999----99999999999999999999999999716


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MG438
species: Mycoplasma genitalium [TaxId: 2097]