HHSEARCH alignment of GI: 254780837 and SCOP domain: d1yf2a2

Alignment
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=99.94  E-value=7.3e-27  Score=182.90  Aligned_cols=187  Identities=13%  Similarity=0.238  Sum_probs=130.8

Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCC-----CCC-CCCCEEEEECCCCCCCCCCCC----CCC-EEC--CCCCCCEEECCCCE
Q ss_conf             68686656433024310134567-----644-443215774045532465322----121-000--44332024228848
Q gi|254780837|r  225 VGLVPDHWEVKPFFALVTELNRK-----NTK-LIESNILSLSYGNIIQKLETR----NMG-LKP--ESYETYQIVDPGEI  291 (426)
Q Consensus       225 lG~IP~~W~~~~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~----~~~-~~~--~~~~~~~~~~~gdi  291 (426)
                      ||+||++|++++|++++...++.     ..+ ..++++++++..++.......    ... ...  ........+..||+
T Consensus         1 lG~iP~~W~~~~L~di~~~~~G~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i   80 (205)
T d1yf2a2           1 IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLNLIPKGSI   80 (205)
T ss_dssp             TSSEETTCEEEEHHHHEEEEECCCCCTTCGGGTTTCCEEEECHHHHHTTTTCSEECCCSSEECHHHHHHTTCCCBCTTCE
T ss_pred             CCCCCCCCEEEEHHHEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEEHHCCCCCEECCCCCE
T ss_conf             97719797899925769995888899775101257963589851246656313604652343210102444222144436


Q ss_pred             EEEEECCCCCEEEEEEECCCCCEEEECHHEEC--CC-CCCCHHHHHHHHHCHHHHHHHHHH-CCCEEEEECHHHHHCCEE
Q ss_conf             99742166403799950235660774111430--57-768868899997098999999862-584041002889824721
Q gi|254780837|r  292 VFRFIDLQNDKRSLRSAQVMERGIITSAYMAV--KP-HGIDSTYLAWLMRSYDLCKVFYAM-GSGLRQSLKFEDVKRLPV  367 (426)
Q Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~yl~~~l~s~~~~~~~~~~-~~g~~~~i~~~~l~~~~i  367 (426)
                      +++..+..+. .+..    ..+..++.+...+  +. ..+++.|+||++.+.  ..++... +++++++|+.+++++++|
T Consensus        81 ~~~~~~~~g~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~i~~~~l~~~~i  153 (205)
T d1yf2a2          81 IISTRAPVGY-VAVL----TVESTFNQGCKGLFQKNNDSVNTEFYAYYLKFK--KNLLENLSGGSTFKELSKSMLENFKI  153 (205)
T ss_dssp             EEECSSSTTC-EEEE----SSCBEECTTEEEEEESCTTSCCHHHHHHHHHHT--HHHHHHHHCSSSSCCCCHHHHHHCEE
T ss_pred             EEEECCCEEE-EEEE----CCCCCEEECHHEECCCCCCCCCHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHCCCC
T ss_conf             6530352378-9996----156505200010102442344699999988888--89998761674434444888851845


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
Q ss_conf             4898899999999999999999999999999999999999997788622336148
Q gi|254780837|r  368 LVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLR  422 (426)
Q Consensus       368 ~lP~leeQ~~I~~~l~~~~~~id~li~~~~~~i~~L~~lk~sLl~~a~tGki~V~  422 (426)
                      |+||++||++|+++|+    .+|++|+..+++++.|+++|++||++|||||+|||
T Consensus       154 ~lP~~~eQ~~I~~~l~----~id~~i~~~~~~~~~l~~~k~~Ll~~l~tGel~v~  204 (205)
T d1yf2a2         154 PLPPLEEQKQIAKILS----SVDKSIELKKQKKEKLQRMKKKIMELLLTGKVRVK  204 (205)
T ss_dssp             EECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEC
T ss_pred             CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf             5799999999999999----99999999999999999999999999837844525


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MJ0130
species: Methanocaldococcus jannaschii [TaxId: 2190]