BLAST/PSIBLAST alignment of GI: 254780837 and GI: 120601537 at iteration 1
>gi|120601537|ref|YP_965937.1| restriction modification system DNA specificity subunit [Desulfovibrio vulgaris DP4] Length = 438
>gi|120561766|gb|ABM27510.1| restriction modification system DNA specificity domain [Desulfovibrio vulgaris DP4] Length = 438
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 216/447 (48%), Gaps = 46/447 (10%)
Query: 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKY 63
+ AYP+YKDSGV+W+G IP HW V + KD++ L + G+
Sbjct: 3 FPAYPEYKDSGVEWLGKIPSHWSVTSLYSLAS----ECDFPNKDMLESNL--LSLSYGRI 56
Query: 64 LPKDGNSRQS----DTSTVSIFAKGQILYGKLGPY------LRKAIIADFDGICSTQFLV 113
+ KD NS T I G I+ +L LR ++ + GI ++ +
Sbjct: 57 IRKDINSNDGLLPESFETYQIVDHGDIVL-RLTDLQNDQRSLRSGLVKE-RGIITSAYTA 114
Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREK 173
++P L +LL T +I G + + +P+ P +EQ I
Sbjct: 115 IRPTASHYSYL-AYLLRAYDTLKIFYSMGGGLRQSMKFSDLRRLPILKPAYSEQSAIAVF 173
Query: 174 IIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWE 233
+ ET +ID LITE+ + IELLKEK+QA++S+ VTKGL P+V MKDSG+EW+G VP+HW+
Sbjct: 174 LDHETAKIDALITEQEKLIELLKEKRQAVISHAVTKGLAPNVPMKDSGVEWLGEVPEHWK 233
Query: 234 VKPFFALVTELNRKNTKL-------IESNILSLSYGNIIQ--KLETRNMGLKPESYETYQ 284
V V + +T IE + G+ +L + + + PE+ + +
Sbjct: 234 VAKLRRFVRAVQTGSTPSASPPNTDIEDGTYWFTPGDFSGPIRLGSSSKKVPPEAIKQGE 293
Query: 285 I-VDPGEIVFRF-IDLQNDK----RSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMR 338
+ V P VF I K +L SA II +A ++ +LA+ +
Sbjct: 294 VKVFPAGAVFVVSIGATLGKIGYLLTLASANQQINAIIPNA-------DVEGLFLAYSLS 346
Query: 339 S--YDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKI 396
S ++ + A G+ + E K + + VPP+ EQ IT ++ + D LV +
Sbjct: 347 SKTSEMMNLSNASTIGI---MNQEKTKEIWLTVPPLCEQERITKFLDEDCVTSDALVNES 403
Query: 397 EQSIVLLKERRSSFIAAAVTGQIDLRG 423
+++I LLKERRS+ I+AAVTG+ID+RG
Sbjct: 404 QRAIDLLKERRSALISAAVTGKIDVRG 430