BLAST/PSIBLAST alignment of GI: 254780837 and GI: 120601537 at iteration 1
>gi|120601537|ref|YP_965937.1| restriction modification system DNA specificity subunit [Desulfovibrio vulgaris DP4] Length = 438
>gi|120561766|gb|ABM27510.1| restriction modification system DNA specificity domain [Desulfovibrio vulgaris DP4] Length = 438
 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 216/447 (48%), Gaps = 46/447 (10%)

Query: 4   YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKY 63
           + AYP+YKDSGV+W+G IP HW V  +               KD++   L  +    G+ 
Sbjct: 3   FPAYPEYKDSGVEWLGKIPSHWSVTSLYSLAS----ECDFPNKDMLESNL--LSLSYGRI 56

Query: 64  LPKDGNSRQS----DTSTVSIFAKGQILYGKLGPY------LRKAIIADFDGICSTQFLV 113
           + KD NS          T  I   G I+  +L         LR  ++ +  GI ++ +  
Sbjct: 57  IRKDINSNDGLLPESFETYQIVDHGDIVL-RLTDLQNDQRSLRSGLVKE-RGIITSAYTA 114

Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREK 173
           ++P       L  +LL    T +I     G       +  +  +P+  P  +EQ  I   
Sbjct: 115 IRPTASHYSYL-AYLLRAYDTLKIFYSMGGGLRQSMKFSDLRRLPILKPAYSEQSAIAVF 173

Query: 174 IIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWE 233
           +  ET +ID LITE+ + IELLKEK+QA++S+ VTKGL P+V MKDSG+EW+G VP+HW+
Sbjct: 174 LDHETAKIDALITEQEKLIELLKEKRQAVISHAVTKGLAPNVPMKDSGVEWLGEVPEHWK 233

Query: 234 VKPFFALVTELNRKNTKL-------IESNILSLSYGNIIQ--KLETRNMGLKPESYETYQ 284
           V      V  +   +T         IE      + G+     +L + +  + PE+ +  +
Sbjct: 234 VAKLRRFVRAVQTGSTPSASPPNTDIEDGTYWFTPGDFSGPIRLGSSSKKVPPEAIKQGE 293

Query: 285 I-VDPGEIVFRF-IDLQNDK----RSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMR 338
           + V P   VF   I     K     +L SA      II +A        ++  +LA+ + 
Sbjct: 294 VKVFPAGAVFVVSIGATLGKIGYLLTLASANQQINAIIPNA-------DVEGLFLAYSLS 346

Query: 339 S--YDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKI 396
           S   ++  +  A   G+   +  E  K + + VPP+ EQ  IT  ++ +    D LV + 
Sbjct: 347 SKTSEMMNLSNASTIGI---MNQEKTKEIWLTVPPLCEQERITKFLDEDCVTSDALVNES 403

Query: 397 EQSIVLLKERRSSFIAAAVTGQIDLRG 423
           +++I LLKERRS+ I+AAVTG+ID+RG
Sbjct: 404 QRAIDLLKERRSALISAAVTGKIDVRG 430