PSIBLAST alignment of GI: 254780837 and protein with PDB id: 1yf2
gi|61680619|pdb|1YF2|A Chain A, Three-Dimensional Structure Of Dna Sequence Specificity (S) Subunit Of A Type I Restriction-Modification Enzyme And Its Functional Implications Length = 425
>gi|61680620|pdb|1YF2|B Chain B, Three-Dimensional Structure Of Dna Sequence Specificity (S) Subunit Of A Type I Restriction-Modification Enzyme And Its Functional Implications Length = 425
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/438 (16%), Positives = 151/438 (34%), Gaps = 42/438 (9%)
Query: 8 PQYKDSGVQWIGAIPKHWKVVPIKRFTK-LNTGRTSE-------SGKDIIYIGLEDVESG 59
+K + IG IP+ W++V +K K + G T + I ++ +ED+ +
Sbjct: 6 ENFKKTE---IGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNS 62
Query: 60 TGKYLPKDGNSRQS--DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPK 117
+ + S I K +L+ G A I + + L + PK
Sbjct: 63 NKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETA-INKIEVATNQAILGIIPK 121
Query: 118 DVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAE 177
D + E + + + T + + + + + +P+PPL EQ I + +
Sbjct: 122 DNILESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKIL--- 178
Query: 178 TVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPF 237
+ID I + I L+ K+ L+ ++TKG+ K +G +P+ WEV
Sbjct: 179 -TKIDEGIEIIEKSINKLERIKKGLMHKLLTKGIGHSRFKKS----EIGEIPEDWEVFEI 233
Query: 238 FALVTELNRKNTKLIESNILSLSYGNIIQ-------------KLETRNMGLKPESYETYQ 284
+ +S N I R +
Sbjct: 234 KDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSERKVTKIALEKCNLN 293
Query: 285 IVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMRSYDLCK 344
++ G I+ L +G +++ + A+ ++
Sbjct: 294 LIPKGSIIISTRAPVGYVAVLTVESTFNQGC--KGLFQKNNDSVNTEFYAYYLKFKKNLL 351
Query: 345 VFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLK 404
+ G + L ++ + +PP++EQ I +++ D +E +Q L+
Sbjct: 352 ENLS-GGSTFKELSKSMLENFKIPLPPLEEQKQIAKILSSV----DKSIELKKQKKEKLQ 406
Query: 405 ERRSSFIAAAVTGQIDLR 422
+ + +TG++ ++
Sbjct: 407 RMKKKIMELLLTGKVRVK 424