RPSBLAST alignment of GI: 254780837 and protein with PDBid: 1ydx
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2 Length = 406
Score = 67.8 bits (164), Expect = 5e-12
Identities = 45/400 (11%), Positives = 99/400 (24%), Gaps = 39/400 (9%)
Query: 25 WKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSIFAKG 84
W I L G E ++ + GKY +G + S + K
Sbjct: 36 WTKRTIDSLFDLKKGEMLEK----------ELITPEGKYEYFNGGVKNSGRTDKFNTFKN 85
Query: 85 QILYGKLGPYLRKAIIAD--FDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEAICE 142
I G + F G + +L P ++ + L S +RIEA+
Sbjct: 86 TISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQ--ERIEALAF 143
Query: 143 GATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQAL 202
G T+ + + + +P + + I D + IE+ ++ +
Sbjct: 144 GTTIQNIRISDLKELEIPFTSNKNE---QHAIANTLSVFDERLENLASLIEINRKLRDEY 200
Query: 203 VSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFALVTELNRKNTKLIESNILSLSYG 262
+ + K + + + K K
Sbjct: 201 AHKLFSLDEAFLSHWKLEAL------QSQMHEITLGEIFNFKSGKYLKS--------EER 246
Query: 263 NIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMA 322
K G+ + + I S +
Sbjct: 247 LEEGKFPYYGAGIDNTGFVAEPNTEKDTISIISNGYSLGNIRYHEIPWFNGT--GSIALE 304
Query: 323 VKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPV-LVPPIKEQFDITNV 381
+ I + ++ L + + V V + Q +
Sbjct: 305 PMNNEIYVPFFYCALKYLQKDIKERMKSDD-SPFLSLKLAGEIKVPYVKSFQLQRKAGKI 363
Query: 382 INVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDL 421
+ +D +++ ++ + L R + + +
Sbjct: 364 VF----LLDQKLDQYKKELSSLTVIRDTLLKKLFPDMTER 399