RPSBLAST alignment of GI: 254780837 and protein with PDBid: 1ydx

>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2 Length = 406

 Score = 50.4 bits (119), Expect = 8e-07
 Identities = 21/187 (11%), Positives = 50/187 (26%), Gaps = 15/187 (8%)

Query: 17  WIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTS 76
            + A+      + +       +G+  +S + +             K+         +   
Sbjct: 216 KLEALQSQMHEITLGEIFNFKSGKYLKSEERLEEG----------KFPYYGAGIDNTGFV 265

Query: 77  TVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQR 136
                 K  I     G  L      +      T  + L+P +    +   +     + + 
Sbjct: 266 AEPNTEKDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQKD 325

Query: 137 IEAICEGATMSHADWKGIGNIPMP-IPPLAEQVLIREKIIAETVRIDTLITERIRFIELL 195
           I+   +         K  G I +P +     Q     K       +D  + +  + +  L
Sbjct: 326 IKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQ----RKAGKIVFLLDQKLDQYKKELSSL 381

Query: 196 KEKKQAL 202
              +  L
Sbjct: 382 TVIRDTL 388