RPSBLAST alignment of GI: 254780837 and SCOP domain: d1yf2a1

Alignment

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 19/227 (8%)

Query: 4   YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGK--------DIIYIGLED 55
           +     +K +    IG IP+ W++V +K   K      +             I ++ +ED
Sbjct: 2   FYKEENFKKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIED 58

Query: 56  VESGTGKYLPKDGNSRQS--DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV 113
           + +             +   + S   I  K  +L+   G     AI             +
Sbjct: 59  ITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGI 118

Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREK 173
           +   ++L      ++L+ +       +    T  + + + + +  +P+PPL EQ    ++
Sbjct: 119 IPKDNILESEFLYYILAKN-KNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQ----KQ 173

Query: 174 IIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDS 220
           I     +ID  I    + I  L+  K+ L+  ++TKG+    + K S
Sbjct: 174 IAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLTKGIG-HSRFKKS 219

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA methylase specificity domain
superfamily: DNA methylase specificity domain
family: Type I restriction modification DNA specificity domain
domain: Bipartite methylase S protein MJ0130
species: Methanocaldococcus jannaschii [TaxId: 2190]