RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62] (426 letters) >d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 220 Score = 64.4 bits (155), Expect = 2e-11 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 19/227 (8%) Query: 4 YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGK--------DIIYIGLED 55 + +K + IG IP+ W++V +K K + I ++ +ED Sbjct: 2 FYKEENFKKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIED 58 Query: 56 VESGTGKYLPKDGNSRQS--DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV 113 + + + + S I K +L+ G AI + Sbjct: 59 ITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGI 118 Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREK 173 + ++L ++L+ + + T + + + + + +P+PPL EQ ++ Sbjct: 119 IPKDNILESEFLYYILAKN-KNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQ----KQ 173 Query: 174 IIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDS 220 I +ID I + I L+ K+ L+ ++TKG+ + K S Sbjct: 174 IAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLTKGIG-HSRFKKS 219 Score = 57.8 bits (138), Expect = 2e-09 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 15/211 (7%) Query: 218 KDSGIEWVGLVPDHWEVKPFFALVTELNRKNT-------KLIESNILSLSYGNIIQKLET 270 K + +G +P+ WE+ + ++ T I + +I + Sbjct: 9 KKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKY 65 Query: 271 RNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH-GID 329 + E + + + +A A + + P I Sbjct: 66 LTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIPKDNIL 125 Query: 330 STYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARI 389 + + + + + +++L + VK + +PP++EQ I ++ +I Sbjct: 126 ESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILT----KI 181 Query: 390 DVLVEKIEQSIVLLKERRSSFIAAAVTGQID 420 D +E IE+SI L+ + + +T I Sbjct: 182 DEGIEIIEKSINKLERIKKGLMHKLLTKGIG 212 >d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 205 Score = 58.2 bits (139), Expect = 1e-09 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 15/202 (7%) Query: 18 IGAIPKHWKVVPIKRFTKLNTGRTSESGK-------DIIYIGLEDVESGTGKYLPKDGNS 70 IG IP+ W+V IK ++ TG T + K +I +I D+ K Sbjct: 1 IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSER 60 Query: 71 RQSDTST----VSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQG 126 + + + +++ KG I+ P A++ + Q + Sbjct: 61 KVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFY 120 Query: 127 WLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLIT 186 +E + G+T + N +P+PPL EQ ++I +D I Sbjct: 121 AYYLKFKKNLLENLSGGSTFKELSKSMLENFKIPLPPLEEQ----KQIAKILSSVDKSIE 176 Query: 187 ERIRFIELLKEKKQALVSYIVT 208 + + E L+ K+ ++ ++T Sbjct: 177 LKKQKKEKLQRMKKKIMELLLT 198 Score = 54.8 bits (130), Expect = 1e-08 Identities = 27/209 (12%), Positives = 70/209 (33%), Gaps = 16/209 (7%) Query: 225 VGLVPDHWEVKPFFALVTELNRKNTKLIESNILSLSYGNIIQKLETRNMG--------LK 276 +G +P+ WEV + +S N I L+ + + Sbjct: 1 IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSER 60 Query: 277 PESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH---GIDSTYL 333 + + + I I + A + + +++ + Sbjct: 61 KVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFY 120 Query: 334 AWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLV 393 A+ ++ + GS + L ++ + +PP++EQ I +++ +D + Sbjct: 121 AYYLKFKKNLLENLSGGST-FKELSKSMLENFKIPLPPLEEQKQIAKILS----SVDKSI 175 Query: 394 EKIEQSIVLLKERRSSFIAAAVTGQIDLR 422 E +Q L+ + + +TG++ ++ Sbjct: 176 ELKKQKKEKLQRMKKKIMELLLTGKVRVK 204 >d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Length = 193 Score = 37.3 bits (85), Expect = 0.003 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 13/182 (7%) Query: 21 IPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSI 80 +W I L G E ++ + GKY +G + S + Sbjct: 9 NNINWTKRTIDSLFDLKKGEMLEK----------ELITPEGKYEYFNGGVKNSGRTDKFN 58 Query: 81 FAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEAI 140 K I G + + + + +L + +RIEA+ Sbjct: 59 TFKNTISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQERIEAL 118 Query: 141 CEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQ 200 G T+ + + + +P + + I D + IE+ ++ + Sbjct: 119 AFGTTIQNIRISDLKELEIPFTSNKNE---QHAIANTLSVFDERLENLASLIEINRKLRD 175 Query: 201 AL 202 Sbjct: 176 EY 177 >d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]} Length = 181 Score = 36.1 bits (82), Expect = 0.005 Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 13/183 (7%) Query: 20 AIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVS 79 A+ + + +G+ +S ++ + GK+ + Sbjct: 3 ALQSQMHEITLGEIFNFKSGKYLKS-EERLE---------EGKFPYYGAGIDNTGFVAEP 52 Query: 80 IFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEA 139 K I G L + T + L+P + + + + + I+ Sbjct: 53 NTEKDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQKDIKE 112 Query: 140 ICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKK 199 + K G I +P ++ K +D + + + + L + Sbjct: 113 RMKSDDSPFLSLKLAGEIKVPYVK---SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIR 169 Query: 200 QAL 202 L Sbjct: 170 DTL 172 Score = 28.0 bits (61), Expect = 1.6 Identities = 7/95 (7%), Positives = 24/95 (25%), Gaps = 4/95 (4%) Query: 317 TSAYMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQF 376 S + + I + ++ + V + Q Sbjct: 83 GSIALEPMNNEIYVPFFYCALKYLQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQR 142 Query: 377 DITNVINVETARIDVLVEKIEQSIVLLKERRSSFI 411 ++ + ++D +++ L R + + Sbjct: 143 KAGKIVFLLDQKLDQYKKELSS----LTVIRDTLL 173 >d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Score = 27.9 bits (62), Expect = 1.4 Identities = 8/38 (21%), Positives = 13/38 (34%) Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADW 151 LQ + LL L + + I+ G+ A Sbjct: 21 LQVDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQ 58 >d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId: 9606]} Length = 166 Score = 26.8 bits (59), Expect = 3.3 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%) Query: 366 PVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLRGES 425 + VP K F + V ++V Q + LL E A + GQ L S Sbjct: 38 KITVPDTKVNFYAWKRMEVGQQAVEVW-----QGLALLSE-------AVLRGQALLVKSS 85 Query: 426 Q 426 Q Sbjct: 86 Q 86 >d1ogda_ c.133.1.1 (A:) Ribose transport protein RbsD {Bacillus subtilis [TaxId: 1423]} Length = 131 Score = 26.8 bits (59), Expect = 3.5 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 5/42 (11%) Query: 144 ATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLI 185 A + H D I + +P+P ++ ++ + Sbjct: 16 ADLGHTDKIVIADAGLPVPDGVLKI-----DLSLKPGLPAFQ 52 >d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA {Sulfolobus solfataricus [TaxId: 2287]} Length = 327 Score = 26.9 bits (59), Expect = 3.5 Identities = 6/39 (15%), Positives = 16/39 (41%) Query: 190 RFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLV 228 L ++++ + Y++ G+ ++ WVG Sbjct: 185 NCALLDSDERKEIAEYVMGIGVPGYPGGSENAPGWVGRK 223 >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Length = 261 Score = 25.9 bits (56), Expect = 6.6 Identities = 5/18 (27%), Positives = 8/18 (44%) Query: 190 RFIELLKEKKQALVSYIV 207 L+ + K A + YI Sbjct: 7 TMAALMAKGKTAFIPYIT 24 >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 267 Score = 25.2 bits (54), Expect = 9.4 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%) Query: 187 ERI--RFIELLKEKKQALVSYIV 207 ER F +L ++ A V ++ Sbjct: 2 ERYENLFAQLNDRREGAFVPFVT 24 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.138 0.400 Gapped Lambda K H 0.267 0.0600 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,629,201 Number of extensions: 79196 Number of successful extensions: 194 Number of sequences better than 10.0: 1 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 20 Length of query: 426 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 338 Effective length of database: 1,199,356 Effective search space: 405382328 Effective search space used: 405382328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.9 bits)