RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780837|ref|YP_003065250.1| putative restriction
endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62]
         (426 letters)



>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130
           {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 220

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 19/227 (8%)

Query: 4   YKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGK--------DIIYIGLED 55
           +     +K +    IG IP+ W++V +K   K      +             I ++ +ED
Sbjct: 2   FYKEENFKKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIED 58

Query: 56  VESGTGKYLPKDGNSRQS--DTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLV 113
           + +             +   + S   I  K  +L+   G     AI             +
Sbjct: 59  ITNSNKYLTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGI 118

Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREK 173
           +   ++L      ++L+ +       +    T  + + + + +  +P+PPL EQ    ++
Sbjct: 119 IPKDNILESEFLYYILAKN-KNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQ----KQ 173

Query: 174 IIAETVRIDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDS 220
           I     +ID  I    + I  L+  K+ L+  ++TKG+    + K S
Sbjct: 174 IAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLTKGIG-HSRFKKS 219



 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 15/211 (7%)

Query: 218 KDSGIEWVGLVPDHWEVKPFFALVTELNRKNT-------KLIESNILSLSYGNIIQKLET 270
           K +    +G +P+ WE+     +  ++    T             I  +   +I    + 
Sbjct: 9   KKT---EIGEIPEDWEIVELKDVCKKIKAGGTPKTSVEEYYKNGTIPFVKIEDITNSNKY 65

Query: 271 RNMGLKPESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH-GID 329
                   + E     +   +    +          +A          A + + P   I 
Sbjct: 66  LTNTKIKITEEGLNNSNAWIVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIPKDNIL 125

Query: 330 STYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARI 389
            +   + + + +            +++L  + VK   + +PP++EQ  I  ++     +I
Sbjct: 126 ESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILT----KI 181

Query: 390 DVLVEKIEQSIVLLKERRSSFIAAAVTGQID 420
           D  +E IE+SI  L+  +   +   +T  I 
Sbjct: 182 DEGIEIIEKSINKLERIKKGLMHKLLTKGIG 212


>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130
           {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 205

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 15/202 (7%)

Query: 18  IGAIPKHWKVVPIKRFTKLNTGRTSESGK-------DIIYIGLEDVESGTGKYLPKDGNS 70
           IG IP+ W+V  IK   ++ TG T  + K       +I +I   D+     K        
Sbjct: 1   IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSER 60

Query: 71  RQSDTST----VSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQG 126
           + +  +     +++  KG I+     P    A++            + Q  +        
Sbjct: 61  KVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFY 120

Query: 127 WLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLIT 186
                     +E +  G+T        + N  +P+PPL EQ    ++I      +D  I 
Sbjct: 121 AYYLKFKKNLLENLSGGSTFKELSKSMLENFKIPLPPLEEQ----KQIAKILSSVDKSIE 176

Query: 187 ERIRFIELLKEKKQALVSYIVT 208
            + +  E L+  K+ ++  ++T
Sbjct: 177 LKKQKKEKLQRMKKKIMELLLT 198



 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 27/209 (12%), Positives = 70/209 (33%), Gaps = 16/209 (7%)

Query: 225 VGLVPDHWEVKPFFALVTELNRKNTKLIESNILSLSYGNIIQKLETRNMG--------LK 276
           +G +P+ WEV     +            +S        N I  L+   +          +
Sbjct: 1   IGEIPEDWEVFEIKDIFEVKTGTTPSTKKSEYWENGEINWITPLDLSRLNEKIYIGSSER 60

Query: 277 PESYETYQIVDPGEIVFRFIDLQNDKRSLRSAQVMERGIITSAYMAVKPH---GIDSTYL 333
             +    +  +   I    I +         A +            +       +++ + 
Sbjct: 61  KVTKIALEKCNLNLIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFY 120

Query: 334 AWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQFDITNVINVETARIDVLV 393
           A+ ++         + GS   + L    ++   + +PP++EQ  I  +++     +D  +
Sbjct: 121 AYYLKFKKNLLENLSGGST-FKELSKSMLENFKIPLPPLEEQKQIAKILS----SVDKSI 175

Query: 394 EKIEQSIVLLKERRSSFIAAAVTGQIDLR 422
           E  +Q    L+  +   +   +TG++ ++
Sbjct: 176 ELKKQKKEKLQRMKKKIMELLLTGKVRVK 204


>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438
           {Mycoplasma genitalium [TaxId: 2097]}
          Length = 193

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 13/182 (7%)

Query: 21  IPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVSI 80
              +W    I     L  G   E           ++ +  GKY   +G  + S  +    
Sbjct: 9   NNINWTKRTIDSLFDLKKGEMLEK----------ELITPEGKYEYFNGGVKNSGRTDKFN 58

Query: 81  FAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEAI 140
             K  I     G      +         +   +     +  +L   +       +RIEA+
Sbjct: 59  TFKNTISVIVGGSCGYVRLADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQERIEAL 118

Query: 141 CEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKKQ 200
             G T+ +     +  + +P      +   +  I       D  +      IE+ ++ + 
Sbjct: 119 AFGTTIQNIRISDLKELEIPFTSNKNE---QHAIANTLSVFDERLENLASLIEINRKLRD 175

Query: 201 AL 202
             
Sbjct: 176 EY 177


>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438
           {Mycoplasma genitalium [TaxId: 2097]}
          Length = 181

 Score = 36.1 bits (82), Expect = 0.005
 Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 13/183 (7%)

Query: 20  AIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPKDGNSRQSDTSTVS 79
           A+      + +       +G+  +S ++ +           GK+         +      
Sbjct: 3   ALQSQMHEITLGEIFNFKSGKYLKS-EERLE---------EGKFPYYGAGIDNTGFVAEP 52

Query: 80  IFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVLPELLQGWLLSIDVTQRIEA 139
              K  I     G  L      +      T  + L+P +    +   +     + + I+ 
Sbjct: 53  NTEKDTISIISNGYSLGNIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQKDIKE 112

Query: 140 ICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLITERIRFIELLKEKK 199
             +         K  G I +P         ++ K       +D  + +  + +  L   +
Sbjct: 113 RMKSDDSPFLSLKLAGEIKVPYVK---SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIR 169

Query: 200 QAL 202
             L
Sbjct: 170 DTL 172



 Score = 28.0 bits (61), Expect = 1.6
 Identities = 7/95 (7%), Positives = 24/95 (25%), Gaps = 4/95 (4%)

Query: 317 TSAYMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFEDVKRLPVLVPPIKEQF 376
            S  +    + I   +    ++                        +     V   + Q 
Sbjct: 83  GSIALEPMNNEIYVPFFYCALKYLQKDIKERMKSDDSPFLSLKLAGEIKVPYVKSFQLQR 142

Query: 377 DITNVINVETARIDVLVEKIEQSIVLLKERRSSFI 411
               ++ +   ++D   +++      L   R + +
Sbjct: 143 KAGKIVFLLDQKLDQYKKELSS----LTVIRDTLL 173


>d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 97

 Score = 27.9 bits (62), Expect = 1.4
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 114 LQPKDVLPELLQGWLLSIDVTQRIEAICEGATMSHADW 151
           LQ   +   LL   L    + + I+    G+    A  
Sbjct: 21  LQVDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQ 58


>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 166

 Score = 26.8 bits (59), Expect = 3.3
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 366 PVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQIDLRGES 425
            + VP  K  F     + V    ++V      Q + LL E       A + GQ  L   S
Sbjct: 38  KITVPDTKVNFYAWKRMEVGQQAVEVW-----QGLALLSE-------AVLRGQALLVKSS 85

Query: 426 Q 426
           Q
Sbjct: 86  Q 86


>d1ogda_ c.133.1.1 (A:) Ribose transport protein RbsD {Bacillus
           subtilis [TaxId: 1423]}
          Length = 131

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 144 ATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVRIDTLI 185
           A + H D   I +  +P+P    ++      ++    +    
Sbjct: 16  ADLGHTDKIVIADAGLPVPDGVLKI-----DLSLKPGLPAFQ 52


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 26.9 bits (59), Expect = 3.5
 Identities = 6/39 (15%), Positives = 16/39 (41%)

Query: 190 RFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLV 228
               L  ++++ +  Y++  G+       ++   WVG  
Sbjct: 185 NCALLDSDERKEIAEYVMGIGVPGYPGGSENAPGWVGRK 223


>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
           [TaxId: 4577]}
          Length = 261

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 190 RFIELLKEKKQALVSYIV 207
               L+ + K A + YI 
Sbjct: 7   TMAALMAKGKTAFIPYIT 24


>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 267

 Score = 25.2 bits (54), Expect = 9.4
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 187 ERI--RFIELLKEKKQALVSYIV 207
           ER    F +L   ++ A V ++ 
Sbjct: 2   ERYENLFAQLNDRREGAFVPFVT 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,629,201
Number of extensions: 79196
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 20
Length of query: 426
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,199,356
Effective search space: 405382328
Effective search space used: 405382328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)