BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780837|ref|YP_003065250.1| putative restriction
endonuclease S subunit [Candidatus Liberibacter asiaticus str. psy62]
(426 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 426
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MKHYKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGT 60
MKHYKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGT
Sbjct: 1 MKHYKAYPQYKDSGVQWIGAIPKHWKVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGT 60
Query: 61 GKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVL 120
GKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVL
Sbjct: 61 GKYLPKDGNSRQSDTSTVSIFAKGQILYGKLGPYLRKAIIADFDGICSTQFLVLQPKDVL 120
Query: 121 PELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVR 180
PELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVR
Sbjct: 121 PELLQGWLLSIDVTQRIEAICEGATMSHADWKGIGNIPMPIPPLAEQVLIREKIIAETVR 180
Query: 181 IDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFAL 240
IDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFAL
Sbjct: 181 IDTLITERIRFIELLKEKKQALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFFAL 240
Query: 241 VTELNRKNTKLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQN 300
VTELNRKNTKLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQN
Sbjct: 241 VTELNRKNTKLIESNILSLSYGNIIQKLETRNMGLKPESYETYQIVDPGEIVFRFIDLQN 300
Query: 301 DKRSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFE 360
DKRSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFE
Sbjct: 301 DKRSLRSAQVMERGIITSAYMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKFE 360
Query: 361 DVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQID 420
DVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQID
Sbjct: 361 DVKRLPVLVPPIKEQFDITNVINVETARIDVLVEKIEQSIVLLKERRSSFIAAAVTGQID 420
Query: 421 LRGESQ 426
LRGESQ
Sbjct: 421 LRGESQ 426
>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 220
Score = 29.6 bits (65), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 320 YMAVKPHGIDSTYLAWLMRSYDLCKVFYAMGSGLRQSLKF 359
++ +KPH I + WL+ S+D C ++ +MGSG S+ F
Sbjct: 2 HLVLKPHQI--VMVNWLL-SHDRCALWASMGSGKTVSVLF 38
>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 753
Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 180 RIDTLITERIRFIELLKEKK-QALVSYIVTKGLNPDVKMKDSGIEWVGLVPDHWEVKPFF 238
++D ++ R+R + L+E + ++ + ++ + D + +W + + EVK F
Sbjct: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486
Query: 239 ALVTELNRKNTKLIE 253
+ T+L R+ T E
Sbjct: 487 SKSTDLGRRRTTFCE 501
>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 416
Score = 24.6 bits (52), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 23 KHWKVVPIKRFTKLNTGRTSESGKDIIYI-GLEDVESGTGKYLPKDGNSR 71
+ WK ++R +N + GK I Y+ GL D+ + T K++ D + R
Sbjct: 111 RDWKADSLRRDFTINALYADQQGKVIDYVGGLNDLRNRTIKFIG-DAHHR 159
>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Length = 723
Score = 23.1 bits (48), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 26 KVVPIKRFTKLNTGRTSESGKDIIYIGLEDVESGTGKYLPK 66
+V PI F++ + S + + +EDV+ G+ + +PK
Sbjct: 122 EVAPIANFSQETEEESIISANNDVVSNVEDVKGGSPEDVPK 162
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 23.1 bits (48), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 184 LITERIRFIELLKEKKQALVSYIVTKGLNPD 214
L +E+I E LK + YI K +NPD
Sbjct: 11 LYSEQIDLEENLKSSTPMMRQYIEIKSINPD 41
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,953
Number of Sequences: 1233
Number of extensions: 11325
Number of successful extensions: 44
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 15
length of query: 426
length of database: 328,796
effective HSP length: 76
effective length of query: 350
effective length of database: 235,088
effective search space: 82280800
effective search space used: 82280800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)