BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] gi|254040515|gb|ACT57311.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] Length = 103 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN Sbjct: 1 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60 Query: 61 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE Sbjct: 61 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 >gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] Length = 774 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 56 LLPFNFASRSSYQQRS-NILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 L+P N+A Q RS ++LS R +A+D+R + + GNL++++E Sbjct: 444 LIPINYADAKDLQDRSKDMLSPRGSLAVDERTNVLIARDVAGNLNQIEE 492 Searching..................................................done Results from round 2 CONVERGED! >gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] gi|254040515|gb|ACT57311.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] Length = 103 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 103/103 (100%), Positives = 103/103 (100%) Query: 1 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN Sbjct: 1 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKEDGELFIRIMVFEISWSRGEFYVDLLPFN 60 Query: 61 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE Sbjct: 61 FASRSSYQQRSNILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 >gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So ce 56'] Length = 774 Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 56 LLPFNFASRSSYQQRS-NILSHRKEIAIDQRRTPITQKLSMGNLSELQE 103 L+P N+A Q RS ++LS R +A+D+R + + GNL++++E Sbjct: 444 LIPINYADAKDLQDRSKDMLSPRGSLAVDERTNVLIARDVAGNLNQIEE 492 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.326 0.140 0.400 Lambda K H 0.267 0.0457 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,134,308,732 Number of Sequences: 14124377 Number of extensions: 87535934 Number of successful extensions: 227597 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 227593 Number of HSP's gapped (non-prelim): 5 length of query: 103 length of database: 4,842,793,630 effective HSP length: 72 effective length of query: 31 effective length of database: 3,825,838,486 effective search space: 118600993066 effective search space used: 118600993066 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 76 (33.7 bits)