RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780838|ref|YP_003065251.1| hypothetical protein
CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
           thiamine diphosphate-dependent enzyme, alpha-beta fold;
           HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
           3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A*
          Length = 845

 Score = 25.0 bits (54), Expect = 3.6
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 1   MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKED----GELFIRIMVFEISWSRGEFYVDL 56
                 GFL      G   ++S +ESF    +        ++   V EI W +      +
Sbjct: 498 SEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK-----PI 552

Query: 57  LPFNF-ASRSSYQQRSNILSH 76
              N   S   ++Q  N  SH
Sbjct: 553 SSVNLLVSSHVWRQDHNGFSH 573


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)

Query: 77  RKEIA---IDQRRTPITQ-KLSMGN 97
           RK  A   +DQ R P ++ KL   N
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN 418


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 850,682
Number of extensions: 34592
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 5
Length of query: 103
Length of database: 5,693,230
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,044,638
Effective search space: 141562330
Effective search space used: 141562330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)