RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780838|ref|YP_003065251.1| hypothetical protein CLIBASIA_03665 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* Length = 845 Score = 25.0 bits (54), Expect = 3.6 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 10/81 (12%) Query: 1 MNSLLFGFLAFLYAYGGSVVFSLFESFFVEKED----GELFIRIMVFEISWSRGEFYVDL 56 GFL G ++S +ESF + ++ V EI W + + Sbjct: 498 SEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK-----PI 552 Query: 57 LPFNF-ASRSSYQQRSNILSH 76 N S ++Q N SH Sbjct: 553 SSVNLLVSSHVWRQDHNGFSH 573 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 24.5 bits (53), Expect = 6.3 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%) Query: 77 RKEIA---IDQRRTPITQ-KLSMGN 97 RK A +DQ R P ++ KL N Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN 418 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.140 0.400 Gapped Lambda K H 0.267 0.0577 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 850,682 Number of extensions: 34592 Number of successful extensions: 64 Number of sequences better than 10.0: 1 Number of HSP's gapped: 64 Number of HSP's successfully gapped: 5 Length of query: 103 Length of database: 5,693,230 Length adjustment: 68 Effective length of query: 35 Effective length of database: 4,044,638 Effective search space: 141562330 Effective search space used: 141562330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.4 bits)