Query gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 32 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 18:10:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780839.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1u6z_A Exopolyphosphatase; al 28.2 25 0.00074 17.8 1.2 19 8-26 11-31 (62) 2 >1q87_A 39 kDa initiator bindi 9.7 66 0.002 15.8 -0.2 19 9-27 51-69 (114) 3 >2zo4_A Metallo-beta-lactamase 8.7 1.5E+02 0.0045 14.1 1.3 13 13-25 32-44 (151) 4 >2jya_A AGR_C_3324P, uncharact 8.6 1.7E+02 0.0052 13.8 1.6 16 11-26 24-42 (106) 5 >1m2x_A Class B carbapenemase 8.1 1.7E+02 0.0049 13.9 1.3 13 14-26 38-50 (114) 6 >1e0n_A Hypothetical protein; 6.9 2E+02 0.0059 13.5 1.2 10 12-21 2-11 (27) 7 >3bk2_A RNAse J, metal depende 6.8 2E+02 0.0058 13.6 1.2 13 13-25 40-52 (170) 8 >3cx5_C Cytochrome B-C1 comple 6.7 1.3E+02 0.0038 14.5 0.1 9 18-26 96-104 (106) 9 >3c8z_A Cysteinyl-tRNA synthet 6.2 1.3E+02 0.0039 14.4 0.0 21 8-28 72-92 (96) 10 >1o9a_B FNBB, fibronectin bind 5.9 82 0.0024 15.4 -1.2 10 12-21 23-32 (36) No 1 >>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:452-513) Probab=28.24 E-value=25 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=14.2 Q ss_pred EEEEEEEEEEECCC--CCCCC Q ss_conf 78887899984267--88322 Q gi|254780839|r 8 FSVFKWSIIFDTGW--NNPLG 26 (32) Q Consensus 8 fsvfkwsiifdtgw--nnplg 26 (32) -+--.|.+.|+.|| +|||. T Consensus 11 a~~~~l~LtfP~gWL~~nPL~ 31 (62) T 1u6z_A 11 TDDSHWTLRFPHDWFSQNALV 31 (62) T ss_dssp EETTEEEEEECTTGGGGCHHH T ss_pred ECCCEEEEEECCCHHHHCCHH T ss_conf 659889999886013319087 No 2 >>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} (A:108-221) Probab=9.73 E-value=66 Score=15.81 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.8 Q ss_pred EEEEEEEEEECCCCCCCCC Q ss_conf 8887899984267883226 Q gi|254780839|r 9 SVFKWSIIFDTGWNNPLGN 27 (32) Q Consensus 9 svfkwsiifdtgwnnplgn 27 (32) -+|||+-.+-.+||-|+-. T Consensus 51 li~k~~~G~~kvyN~P~v~ 69 (114) T 1q87_A 51 LILKTPTGIRKIWNKPLIE 69 (114) T ss_dssp EEEEETTEEEEEEECTTSC T ss_pred EEEEECCCEEEEECCCCCC T ss_conf 9999669568971466547 No 3 >>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} (A:1-151) Probab=8.70 E-value=1.5e+02 Score=14.08 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=10.1 Q ss_pred EEEEEECCCCCCC Q ss_conf 8999842678832 Q gi|254780839|r 13 WSIIFDTGWNNPL 25 (32) Q Consensus 13 wsiifdtgwnnpl 25 (32) -.|++|+||+.+- T Consensus 32 ~~iLiD~G~~~~~ 44 (151) T 2zo4_A 32 EVALVDTALGTRA 44 (151) T ss_dssp EEEEECCCCSSHH T ss_pred EEEEEECCCCCHH T ss_conf 8999989999778 No 4 >>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:) Probab=8.58 E-value=1.7e+02 Score=13.81 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=12.4 Q ss_pred EEEEEEEEC---CCCCCCC Q ss_conf 878999842---6788322 Q gi|254780839|r 11 FKWSIIFDT---GWNNPLG 26 (32) Q Consensus 11 fkwsiifdt---gwnnplg 26 (32) -+|.|-|+. -|.|||- T Consensus 24 ~~W~lefe~~~~r~~~PLM 42 (106) T 2jya_A 24 NVWVLEFDAEVPRKIDPIM 42 (106) T ss_dssp CCEEEEEEEECCSCCCTTT T ss_pred CCEEEEEECCCCCCCCCCC T ss_conf 8479984067887567873 No 5 >>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} (A:1-114) Probab=8.10 E-value=1.7e+02 Score=13.90 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=10.3 Q ss_pred EEEEECCCCCCCC Q ss_conf 9998426788322 Q gi|254780839|r 14 SIIFDTGWNNPLG 26 (32) Q Consensus 14 siifdtgwnnplg 26 (32) .|++|+||+.+.. T Consensus 38 ~iliD~g~~~~~~ 50 (114) T 1m2x_A 38 VVVIDCPWGEDKF 50 (114) T ss_dssp EEEESCCSSGGGH T ss_pred EEEEECCCCHHHH T ss_conf 9999799998999 No 6 >>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} (A:) Probab=6.92 E-value=2e+02 Score=13.53 Aligned_cols=10 Identities=40% Similarity=0.980 Sum_probs=7.4 Q ss_pred EEEEEEECCC Q ss_conf 7899984267 Q gi|254780839|r 12 KWSIIFDTGW 21 (32) Q Consensus 12 kwsiifdtgw 21 (32) -|.||+..|- T Consensus 2 gweiihengr 11 (27) T 1e0n_A 2 GWEIIHENGR 11 (27) T ss_dssp CEEEEESSSS T ss_pred CCEEEECCCC T ss_conf 7266622893 No 7 >>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:1-137,A:433-465) Probab=6.84 E-value=2e+02 Score=13.56 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.1 Q ss_pred EEEEEECCCCCCC Q ss_conf 8999842678832 Q gi|254780839|r 13 WSIIFDTGWNNPL 25 (32) Q Consensus 13 wsiifdtgwnnpl 25 (32) -.|++|+|+.++. T Consensus 40 ~~iLiD~G~~~~~ 52 (170) T 3bk2_A 40 EIFVLDGGLAFPE 52 (170) T ss_dssp EEEEECCCCBCCC T ss_pred EEEEEECCCCCCC T ss_conf 4999948999897 No 8 >>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} (C:108-213) Probab=6.69 E-value=1.3e+02 Score=14.47 Aligned_cols=9 Identities=56% Similarity=0.818 Sum_probs=0.0 Q ss_pred ECCCCCCCC Q ss_conf 426788322 Q gi|254780839|r 18 DTGWNNPLG 26 (32) Q Consensus 18 dtgwnnplg 26 (32) ++|-|||+| T Consensus 96 ~~GS~NPlG 104 (106) T 3cx5_C 96 IHGSSNPLG 104 (106) T ss_dssp HHCCCCTTC T ss_pred HCCCCCCCC T ss_conf 518999998 No 9 >>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} (A:134-229) Probab=6.22 E-value=1.3e+02 Score=14.37 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=0.0 Q ss_pred EEEEEEEEEEECCCCCCCCCC Q ss_conf 788878999842678832264 Q gi|254780839|r 8 FSVFKWSIIFDTGWNNPLGNG 28 (32) Q Consensus 8 fsvfkwsiifdtgwnnplgng 28 (32) |...|-+---+..|+.|.|.| T Consensus 72 FaLWK~~~~~e~~W~SpwG~G 92 (96) T 3c8z_A 72 ALLWRAERPGEPSWPSPFGRG 92 (96) T ss_dssp EEEEEECCTTSCCBCCTTCSE T ss_pred HHHHHHCCCCCCCCCCCCCCC T ss_conf 741321235887776887775 No 10 >>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae} (B:) Probab=5.86 E-value=82 Score=15.35 Aligned_cols=10 Identities=60% Similarity=1.069 Sum_probs=0.0 Q ss_pred EEEEEEECCC Q ss_conf 7899984267 Q gi|254780839|r 12 KWSIIFDTGW 21 (32) Q Consensus 12 kwsiifdtgw 21 (32) |-||-||..| T Consensus 23 k~sihfdnew 32 (36) T 1o9a_B 23 KLSIHFDNEW 32 (36) T ss_dssp CCBCCCCCCC T ss_pred CEEEECCCCC T ss_conf 2578626757 Done!