RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780839|ref|YP_003065252.1| hypothetical protein
CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62]
         (32 letters)



>2pqg_A Ribosome-inactivating protein 3; Pro-RIP, maize, hydrolase; 2.38A
           {Zea mays} PDB: 2pqi_A 2pqj_A* 2k6h_A
          Length = 265

 Score = 25.0 bits (54), Expect = 4.7
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 2   NWGLLHFSVFKWSIIFDTGWNNPLGNGVKSK 32
            W  +  + F+W+        +    G+K K
Sbjct: 219 KWDRISKAAFEWADHPTAVIPDMQKLGIKDK 249


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.141    0.519 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 312,539
Number of extensions: 5870
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 32
Length of database: 5,693,230
Length adjustment: 6
Effective length of query: 26
Effective length of database: 5,547,766
Effective search space: 144241916
Effective search space used: 144241916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)