BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780839|ref|YP_003065252.1| hypothetical protein
CLIBASIA_03670 [Candidatus Liberibacter asiaticus str. psy62]
         (32 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780839|ref|YP_003065252.1| hypothetical protein CLIBASIA_03670 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 32

 Score = 66.6 bits (161), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 1  MNWGLLHFSVFKWSIIFDTGWNNPLGNGVKSK 32
          MNWGLLHFSVFKWSIIFDTGWNNPLGNGVKSK
Sbjct: 1  MNWGLLHFSVFKWSIIFDTGWNNPLGNGVKSK 32


>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 21.6 bits (44), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 8   FSVFKWSIIFDTGWNNPLGNG 28
           F ++K S   + GW +P G G
Sbjct: 191 FILWKRSTPMEPGWESPWGRG 211


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.141    0.519 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,188
Number of Sequences: 1233
Number of extensions: 450
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 32
length of database: 328,796
effective HSP length: 6
effective length of query: 26
effective length of database: 321,398
effective search space:  8356348
effective search space used:  8356348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)