Query         gi|254780840|ref|YP_003065253.1| hypothetical protein CLIBASIA_03675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 52
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 21:05:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780840.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1n08_A Putative riboflavin kin  10.9      49  0.0021   14.9   0.3   18    1-18     19-36  (163)
  2 2cjg_A L-lysine-epsilon aminot   6.5      22 0.00091   16.8  -3.1   23    3-27     32-54  (449)
  3 2gbo_A UPF0358 protein EF2458;   5.8 1.4E+02  0.0058   12.5   0.7   22   21-42     44-68  (104)
  4 1mrz_A Riboflavin kinase/FMN a   5.0 1.2E+02  0.0052   12.7   0.0   18    1-18    155-172 (293)
  5 2p0v_A Hypothetical protein BT   4.7 1.1E+02  0.0045   13.0  -0.4   14    4-17    380-393 (489)
  6 3dxv_A Alpha-amino-epsilon-cap   4.7      27  0.0011   16.3  -3.5   12   12-23     42-53  (452)
  7 2qee_A BH0493 protein; amidohy   4.4      98  0.0041   13.3  -0.9   20   25-52    357-378 (437)
  8 2qtx_A Uncharacterized protein   4.2   1E+02  0.0044   13.1  -0.8    9   42-50     17-25  (71)
  9 2nvp_A Hypothetical protein; a   4.1 1.2E+02  0.0052   12.7  -0.5   14    4-17    334-347 (435)
 10 2hjq_A Hypothetical protein YQ   3.9 2.2E+02  0.0094   11.3   1.2    7   37-43     90-96  (111)

No 1  
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=10.92  E-value=49  Score=14.87  Aligned_cols=18  Identities=44%  Similarity=0.853  Sum_probs=14.2

Q ss_pred             CCCCCEEEEEEHHHHHHH
Q ss_conf             987742522102123788
Q gi|254780840|r    1 MTGYPFYFWGKISHGIGL   18 (52)
Q Consensus         1 mtgypfyfwgkishgigl   18 (52)
                      +.-||+.+-|++.||-++
T Consensus        19 ~~pyPy~i~G~Vv~G~~r   36 (163)
T 1n08_A           19 QSPYPIRFEGKVVHGFGR   36 (163)
T ss_dssp             CTTCCEEEEEEEECCSSS
T ss_pred             CCCCCEEEEEEEEECCCC
T ss_conf             999888989899618842


No 2  
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=6.53  E-value=22  Score=16.79  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=13.2

Q ss_pred             CCCEEEEEEHHHHHHHHHHHHHCCH
Q ss_conf             7742522102123788999875416
Q gi|254780840|r    3 GYPFYFWGKISHGIGLFLWDVLDGR   27 (52)
Q Consensus         3 gypfyfwgkishgiglflwdvldgr   27 (52)
                      ||||.+  .|+++-|-+|||-.||+
T Consensus        32 ~~~~~i--~i~r~~G~yl~D~~dG~   54 (449)
T 2cjg_A           32 GLDIVL--DLTRSGGSYLVDAITGR   54 (449)
T ss_dssp             SCSSCB--CTTTCBBTEEEBTTTCC
T ss_pred             CCCCCE--EEEEEECCEEEECCCCC
T ss_conf             886422--57850223999889998


No 3  
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} SCOP: a.23.6.1
Probab=5.82  E-value=1.4e+02  Score=12.46  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=16.2

Q ss_pred             HHHHCCHHHHHHHHH---HHHHHHH
Q ss_conf             987541699999999---9999999
Q gi|254780840|r   21 WDVLDGRVFQFYRVV---VRIALIF   42 (52)
Q Consensus        21 wdvldgrvfqfyrvv---vrialif   42 (52)
                      =+|+|-+.|-|-|-|   ||+.||-
T Consensus        44 EEVlDTQmfGlSrEVdFAvrlgli~   68 (104)
T 2gbo_A           44 EEVVDTQMYGFSRQVTYATRLGILT   68 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999988731278888999967653


No 4  
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=4.98  E-value=1.2e+02  Score=12.71  Aligned_cols=18  Identities=17%  Similarity=0.152  Sum_probs=12.6

Q ss_pred             CCCCCEEEEEEHHHHHHH
Q ss_conf             987742522102123788
Q gi|254780840|r    1 MTGYPFYFWGKISHGIGL   18 (52)
Q Consensus         1 mtgypfyfwgkishgigl   18 (52)
                      |-|+|+.+-|++.||-++
T Consensus       155 lLgr~y~i~G~Vv~G~~~  172 (293)
T 1mrz_A          155 YLGRYFEIEGIVHKDREF  172 (293)
T ss_dssp             HHSSCCEEEEEC------
T ss_pred             HCCCCEEEEEEEECCCCC
T ss_conf             358977999999767532


No 5  
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=4.73  E-value=1.1e+02  Score=13.04  Aligned_cols=14  Identities=43%  Similarity=1.042  Sum_probs=7.5

Q ss_pred             CCEEEEEEHHHHHH
Q ss_conf             74252210212378
Q gi|254780840|r    4 YPFYFWGKISHGIG   17 (52)
Q Consensus         4 ypfyfwgkishgig   17 (52)
                      .|+||-|+.-+|||
T Consensus       380 NPYy~~G~~~~GIG  393 (489)
T 2p0v_A          380 NPYFFKGSAGEGIG  393 (489)
T ss_dssp             STTEEECSSCEEEC
T ss_pred             CCCEEECCCCCCCC
T ss_conf             98514267534467


No 6  
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyridoxal phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=4.68  E-value=27  Score=16.28  Aligned_cols=12  Identities=42%  Similarity=0.396  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             212378899987
Q gi|254780840|r   12 ISHGIGLFLWDV   23 (52)
Q Consensus        12 ishgiglflwdv   23 (52)
                      |++|-|-++||+
T Consensus        42 i~~a~G~~l~D~   53 (452)
T 3dxv_A           42 ISGGRGARLIEE   53 (452)
T ss_dssp             EEEEEBTEEEET
T ss_pred             EEEEECCEEEEC
T ss_conf             999564899979


No 7  
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=4.39  E-value=98  Score=13.26  Aligned_cols=20  Identities=20%  Similarity=0.522  Sum_probs=0.0

Q ss_pred             CCHHHHHH--HHHHHHHHHHHHHHHHHCCC
Q ss_conf             41699999--99999999999878762279
Q gi|254780840|r   25 DGRVFQFY--RVVVRIALIFEYGRRFIGNI   52 (52)
Q Consensus        25 dgrvfqfy--rvvvrialifeygrrfigni   52 (52)
                      |.|+|-+|  |        +||.||.+.|+
T Consensus       357 DsR~~~s~~~r--------~e~fRriL~~v  378 (437)
T 2qee_A          357 DARVLEQLIYK--------WHHSKSIIAEV  378 (437)
T ss_dssp             CCSBTTHHHHH--------HHHHHHHHHHH
T ss_pred             CCHHHHCCCHH--------HHHHHHHHHHH
T ss_conf             51355112369--------99999999999


No 8  
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=4.18  E-value=1e+02  Score=13.10  Aligned_cols=9  Identities=67%  Similarity=1.261  Sum_probs=0.0

Q ss_pred             HHHHHHHHC
Q ss_conf             998787622
Q gi|254780840|r   42 FEYGRRFIG   50 (52)
Q Consensus        42 feygrrfig   50 (52)
                      |||.||.-|
T Consensus        17 feyarrl~g   25 (71)
T 2qtx_A           17 FEYARRLNG   25 (71)
T ss_dssp             CCGGGGGTT
T ss_pred             HHHHHHCCC
T ss_conf             688987079


No 9  
>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} SCOP: a.102.1.8
Probab=4.06  E-value=1.2e+02  Score=12.70  Aligned_cols=14  Identities=50%  Similarity=0.961  Sum_probs=0.0

Q ss_pred             CCEEEEEEHHHHHH
Q ss_conf             74252210212378
Q gi|254780840|r    4 YPFYFWGKISHGIG   17 (52)
Q Consensus         4 ypfyfwgkishgig   17 (52)
                      .|+||-|+.-.|||
T Consensus       334 NPyy~~G~~~~GIG  347 (435)
T 2nvp_A          334 NRFFFEGKAAKGIG  347 (435)
T ss_dssp             STTEEECSSCEEEC
T ss_pred             CCCEEECCCCCCCC
T ss_conf             98635466451036


No 10 
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=3.93  E-value=2.2e+02  Score=11.34  Aligned_cols=7  Identities=57%  Similarity=0.871  Sum_probs=0.0

Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780840|r   37 RIALIFE   43 (52)
Q Consensus        37 rialife   43 (52)
                      |||+|.|
T Consensus        90 RIa~ILe   96 (111)
T 2hjq_A           90 RIAYILK   96 (111)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


Done!