Query gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 246 No_of_seqs 127 out of 965 Neff 6.6 Searched_HMMs 23785 Date Tue May 31 20:56:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780841.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2cx6_A Hypothetical protein YH 50.7 7.2 0.0003 17.2 2.2 33 62-98 20-54 (90) 2 2za4_B Barstar; protein-protei 41.0 13 0.00055 15.7 2.3 25 62-90 20-44 (90) 3 2odb_B Serine/threonine-protei 29.5 18 0.00077 14.9 1.5 16 133-148 19-34 (35) 4 2qme_I CRIB domain of the seri 22.3 20 0.00085 14.6 0.7 17 132-148 18-34 (36) 5 2ov2_I Serine/threonine-protei 15.8 37 0.0016 13.1 0.8 15 133-147 19-33 (35) 6 1f3m_A Serine/threonine-protei 13.2 55 0.0023 12.2 1.5 18 133-150 23-40 (80) 7 1cq0_A Protein (NEW hypothalam 6.1 1.1E+02 0.0045 10.5 0.6 16 58-73 6-21 (28) 8 2zjs_Y Preprotein translocase 5.8 1.1E+02 0.0047 10.4 4.8 24 47-71 159-182 (434) 9 1umu_A UMUD'; induced mutagene 5.3 1.1E+02 0.0048 10.4 0.0 7 139-145 1-7 (116) 10 1i6u_A 30S ribosomal protein S 5.2 1.2E+02 0.0051 10.2 0.9 8 82-89 5-12 (130) No 1 >2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} SCOP: c.9.1.1 Probab=50.74 E-value=7.2 Score=17.19 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=22.1 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHH Q ss_conf 9999828743675326366755799999999--999999 Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV--LPAFAL 98 (246) Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv--aPa~l~ 98 (246) .+|+.++-.+.| |..+|.|.|.+|=+. .|..+. T Consensus 20 ~l~~~~~~p~~f----G~NlDAl~D~Lt~~~~~~P~~i~ 54 (90) T 2cx6_A 20 DFSQTFGLAKDK----VRDLDSLWDVLMNDVLPLPLEIE 54 (90) T ss_dssp HHHHHTTCCTTS----CSSHHHHHHHHHTTCSCSSEEEE T ss_pred HHHHHCCCCCCC----CCCHHHHHHHHCCCCCCCCEEEE T ss_conf 999873997101----68889999986468888766999 No 2 >2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A* Probab=41.04 E-value=13 Score=15.69 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=18.6 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99998287436753263667557999999 Q gi|254780841|r 62 PIARKMRVKEVLPNWSGDTLDNIIDYLTY 90 (246) Q Consensus 62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsF 90 (246) .+++.++ +|..+|..+|.|.|.++= T Consensus 20 ~l~~~l~----~P~yfG~N~DAl~D~Ltd 44 (90) T 2za4_B 20 TLKKELA----LPEYYGENLDALWAALTG 44 (90) T ss_dssp HHHHHTT----CCTTCCCSHHHHHHHHHH T ss_pred HHHHHCC----CCHHHCCCHHHHHHHHCC T ss_conf 9999829----960216887899999738 No 3 >2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structural genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Probab=29.52 E-value=18 Score=14.89 Aligned_cols=16 Identities=31% Similarity=0.806 Sum_probs=12.5 Q ss_pred CCCCEEEEECHHHHHH Q ss_conf 8984323010789999 Q gi|254780841|r 133 EEHFFSGFPAVWNMVV 148 (246) Q Consensus 133 ~~~~F~GlP~pa~a~~ 148 (246) +.+.|.|+|-.|..++ T Consensus 19 ~tG~f~GLP~eW~~ll 34 (35) T 2odb_B 19 KEGKFVGLPPQWQNIL 34 (35) T ss_dssp TTTEEESCCHHHHHHH T ss_pred CCCCEECCCHHHHHHH T ss_conf 9981845998999974 No 4 >2qme_I CRIB domain of the serine/threonine-protein kinase PAK 1; GTPase RAC3, small GTP binding protein, P21 RAC; HET: GCP; 1.75A {Homo sapiens} Probab=22.28 E-value=20 Score=14.63 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=12.8 Q ss_pred CCCCCEEEEECHHHHHH Q ss_conf 78984323010789999 Q gi|254780841|r 132 TEEHFFSGFPAVWNMVV 148 (246) Q Consensus 132 ~~~~~F~GlP~pa~a~~ 148 (246) .+.+-|.|+|-.|..++ T Consensus 18 ~~tG~f~GLP~~W~~ll 34 (36) T 2qme_I 18 AVTGEFTGMPEQWARLL 34 (36) T ss_dssp TTTTBCC---------- T ss_pred CCCCCEECCCHHHHHHH T ss_conf 99981705999999985 No 5 >2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS- related C3 botulinum toxin substrate 3; HET: GCP; 2.10A {Homo sapiens} Probab=15.84 E-value=37 Score=13.14 Aligned_cols=15 Identities=33% Similarity=0.884 Sum_probs=11.2 Q ss_pred CCCCEEEEECHHHHH Q ss_conf 898432301078999 Q gi|254780841|r 133 EEHFFSGFPAVWNMV 147 (246) Q Consensus 133 ~~~~F~GlP~pa~a~ 147 (246) +.+-|.|+|..|..+ T Consensus 19 ~tG~f~GLP~~W~~l 33 (35) T 2ov2_I 19 HEQKFTGLPRQWQSL 33 (35) T ss_dssp TTTEEESCCGGGTTT T ss_pred CCCCEECCCHHHHHH T ss_conf 997184499999997 No 6 >1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Probab=13.22 E-value=55 Score=12.18 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=14.0 Q ss_pred CCCCEEEEECHHHHHHHH Q ss_conf 898432301078999999 Q gi|254780841|r 133 EEHFFSGFPAVWNMVVFS 150 (246) Q Consensus 133 ~~~~F~GlP~pa~a~~~~ 150 (246) +.+.|.|+|-.|..++-. T Consensus 23 ~tG~~~GlP~eW~~ll~~ 40 (80) T 1f3m_A 23 VTGEFTGMPEQWARLLQT 40 (80) T ss_dssp TTTEEESCCHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHH T ss_conf 988603799999999998 No 7 >1cq0_A Protein (NEW hypothalamic neuropeptide/orexin- B28); obesity, human HCRT-2/OX-B,neuropeptide, solution structure, de novo protein; NMR {Homo sapiens} SCOP: j.6.1.1 Probab=6.07 E-value=1.1e+02 Score=10.52 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=11.4 Q ss_pred HHHHHHHHHHCCCCCC Q ss_conf 1238999982874367 Q gi|254780841|r 58 GFDGPIARKMRVKEVL 73 (246) Q Consensus 58 ~lDG~iAR~~~~~s~f 73 (246) ++.|++-|++.++.+- T Consensus 6 glqgrlqrllqasgnh 21 (28) T 1cq0_A 6 GLQGRLQRLLQASGNH 21 (28) T ss_dssp SHHHHHHHHHHHTTTS T ss_pred HHHHHHHHHHHHCCCC T ss_conf 0558999999862764 No 8 >2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Probab=5.84 E-value=1.1e+02 Score=10.45 Aligned_cols=24 Identities=4% Similarity=-0.085 Sum_probs=11.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999998312389999828743 Q gi|254780841|r 47 FWWLGLALIIDGFDGPIARKMRVKE 71 (246) Q Consensus 47 ~~~i~iA~i~D~lDG~iAR~~~~~s 71 (246) ..+...+++.=.+|..+.- .+..+ T Consensus 159 ~~L~~Gs~~l~wl~e~it~-~GiGn 182 (434) T 2zjs_Y 159 VTQVAGIALLLWMAERITE-YGIGN 182 (434) T ss_dssp HHHHHHHHHHHHHHHHHHH-TSSSC T ss_pred HHHHHHHHHHHHHHHHHHH-HHCCC T ss_conf 9999999999999877764-40378 No 9 >1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A Probab=5.27 E-value=1.1e+02 Score=10.37 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=0.0 Q ss_pred EEECHHH Q ss_conf 3010789 Q gi|254780841|r 139 GFPAVWN 145 (246) Q Consensus 139 GlP~pa~ 145 (246) |+|+||. T Consensus 1 GfPspA~ 7 (116) T 1umu_A 1 GFPSPAA 7 (116) T ss_dssp ------- T ss_pred CCCCCHH T ss_conf 9452646 No 10 >1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1 Probab=5.23 E-value=1.2e+02 Score=10.22 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 55799999 Q gi|254780841|r 82 DNIIDYLT 89 (246) Q Consensus 82 DSLaD~vs 89 (246) |.+||++| T Consensus 5 D~iaD~lt 12 (130) T 1i6u_A 5 DPLANALN 12 (130) T ss_dssp CHHHHHHH T ss_pred CHHHHHHH T ss_conf 77999999 Done!