Query         gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs    127 out of 965
Neff          6.6 
Searched_HMMs 23785
Date          Tue May 31 20:56:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780841.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2cx6_A Hypothetical protein YH  50.7     7.2  0.0003   17.2   2.2   33   62-98     20-54  (90)
  2 2za4_B Barstar; protein-protei  41.0      13 0.00055   15.7   2.3   25   62-90     20-44  (90)
  3 2odb_B Serine/threonine-protei  29.5      18 0.00077   14.9   1.5   16  133-148    19-34  (35)
  4 2qme_I CRIB domain of the seri  22.3      20 0.00085   14.6   0.7   17  132-148    18-34  (36)
  5 2ov2_I Serine/threonine-protei  15.8      37  0.0016   13.1   0.8   15  133-147    19-33  (35)
  6 1f3m_A Serine/threonine-protei  13.2      55  0.0023   12.2   1.5   18  133-150    23-40  (80)
  7 1cq0_A Protein (NEW hypothalam   6.1 1.1E+02  0.0045   10.5   0.6   16   58-73      6-21  (28)
  8 2zjs_Y Preprotein translocase    5.8 1.1E+02  0.0047   10.4   4.8   24   47-71    159-182 (434)
  9 1umu_A UMUD'; induced mutagene   5.3 1.1E+02  0.0048   10.4   0.0    7  139-145     1-7   (116)
 10 1i6u_A 30S ribosomal protein S   5.2 1.2E+02  0.0051   10.2   0.9    8   82-89      5-12  (130)

No 1  
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics, NPPSFA; 2.43A {Escherichia coli O157} SCOP: c.9.1.1
Probab=50.74  E-value=7.2  Score=17.19  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=22.1

Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHH
Q ss_conf             9999828743675326366755799999999--999999
Q gi|254780841|r   62 PIARKMRVKEVLPNWSGDTLDNIIDYLTYVV--LPAFAL   98 (246)
Q Consensus        62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsFGv--aPa~l~   98 (246)
                      .+|+.++-.+.|    |..+|.|.|.+|=+.  .|..+.
T Consensus        20 ~l~~~~~~p~~f----G~NlDAl~D~Lt~~~~~~P~~i~   54 (90)
T 2cx6_A           20 DFSQTFGLAKDK----VRDLDSLWDVLMNDVLPLPLEIE   54 (90)
T ss_dssp             HHHHHTTCCTTS----CSSHHHHHHHHHTTCSCSSEEEE
T ss_pred             HHHHHCCCCCCC----CCCHHHHHHHHCCCCCCCCEEEE
T ss_conf             999873997101----68889999986468888766999


No 2  
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=41.04  E-value=13  Score=15.69  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99998287436753263667557999999
Q gi|254780841|r   62 PIARKMRVKEVLPNWSGDTLDNIIDYLTY   90 (246)
Q Consensus        62 ~iAR~~~~~s~fp~~~G~~LDSLaD~vsF   90 (246)
                      .+++.++    +|..+|..+|.|.|.++=
T Consensus        20 ~l~~~l~----~P~yfG~N~DAl~D~Ltd   44 (90)
T 2za4_B           20 TLKKELA----LPEYYGENLDALWAALTG   44 (90)
T ss_dssp             HHHHHTT----CCTTCCCSHHHHHHHHHH
T ss_pred             HHHHHCC----CCHHHCCCHHHHHHHHCC
T ss_conf             9999829----960216887899999738


No 3  
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structural genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=29.52  E-value=18  Score=14.89  Aligned_cols=16  Identities=31%  Similarity=0.806  Sum_probs=12.5

Q ss_pred             CCCCEEEEECHHHHHH
Q ss_conf             8984323010789999
Q gi|254780841|r  133 EEHFFSGFPAVWNMVV  148 (246)
Q Consensus       133 ~~~~F~GlP~pa~a~~  148 (246)
                      +.+.|.|+|-.|..++
T Consensus        19 ~tG~f~GLP~eW~~ll   34 (35)
T 2odb_B           19 KEGKFVGLPPQWQNIL   34 (35)
T ss_dssp             TTTEEESCCHHHHHHH
T ss_pred             CCCCEECCCHHHHHHH
T ss_conf             9981845998999974


No 4  
>2qme_I CRIB domain of the serine/threonine-protein kinase PAK 1; GTPase RAC3, small GTP binding protein, P21 RAC; HET: GCP; 1.75A {Homo sapiens}
Probab=22.28  E-value=20  Score=14.63  Aligned_cols=17  Identities=24%  Similarity=0.626  Sum_probs=12.8

Q ss_pred             CCCCCEEEEECHHHHHH
Q ss_conf             78984323010789999
Q gi|254780841|r  132 TEEHFFSGFPAVWNMVV  148 (246)
Q Consensus       132 ~~~~~F~GlP~pa~a~~  148 (246)
                      .+.+-|.|+|-.|..++
T Consensus        18 ~~tG~f~GLP~~W~~ll   34 (36)
T 2qme_I           18 AVTGEFTGMPEQWARLL   34 (36)
T ss_dssp             TTTTBCC----------
T ss_pred             CCCCCEECCCHHHHHHH
T ss_conf             99981705999999985


No 5  
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS- related C3 botulinum toxin substrate 3; HET: GCP; 2.10A {Homo sapiens}
Probab=15.84  E-value=37  Score=13.14  Aligned_cols=15  Identities=33%  Similarity=0.884  Sum_probs=11.2

Q ss_pred             CCCCEEEEECHHHHH
Q ss_conf             898432301078999
Q gi|254780841|r  133 EEHFFSGFPAVWNMV  147 (246)
Q Consensus       133 ~~~~F~GlP~pa~a~  147 (246)
                      +.+-|.|+|..|..+
T Consensus        19 ~tG~f~GLP~~W~~l   33 (35)
T 2ov2_I           19 HEQKFTGLPRQWQSL   33 (35)
T ss_dssp             TTTEEESCCGGGTTT
T ss_pred             CCCCEECCCHHHHHH
T ss_conf             997184499999997


No 6  
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B
Probab=13.22  E-value=55  Score=12.18  Aligned_cols=18  Identities=22%  Similarity=0.560  Sum_probs=14.0

Q ss_pred             CCCCEEEEECHHHHHHHH
Q ss_conf             898432301078999999
Q gi|254780841|r  133 EEHFFSGFPAVWNMVVFS  150 (246)
Q Consensus       133 ~~~~F~GlP~pa~a~~~~  150 (246)
                      +.+.|.|+|-.|..++-.
T Consensus        23 ~tG~~~GlP~eW~~ll~~   40 (80)
T 1f3m_A           23 VTGEFTGMPEQWARLLQT   40 (80)
T ss_dssp             TTTEEESCCHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHH
T ss_conf             988603799999999998


No 7  
>1cq0_A Protein (NEW hypothalamic neuropeptide/orexin- B28); obesity, human HCRT-2/OX-B,neuropeptide, solution structure, de novo protein; NMR {Homo sapiens} SCOP: j.6.1.1
Probab=6.07  E-value=1.1e+02  Score=10.52  Aligned_cols=16  Identities=19%  Similarity=0.418  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHCCCCCC
Q ss_conf             1238999982874367
Q gi|254780841|r   58 GFDGPIARKMRVKEVL   73 (246)
Q Consensus        58 ~lDG~iAR~~~~~s~f   73 (246)
                      ++.|++-|++.++.+-
T Consensus         6 glqgrlqrllqasgnh   21 (28)
T 1cq0_A            6 GLQGRLQRLLQASGNH   21 (28)
T ss_dssp             SHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             0558999999862764


No 8  
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=5.84  E-value=1.1e+02  Score=10.45  Aligned_cols=24  Identities=4%  Similarity=-0.085  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999998312389999828743
Q gi|254780841|r   47 FWWLGLALIIDGFDGPIARKMRVKE   71 (246)
Q Consensus        47 ~~~i~iA~i~D~lDG~iAR~~~~~s   71 (246)
                      ..+...+++.=.+|..+.- .+..+
T Consensus       159 ~~L~~Gs~~l~wl~e~it~-~GiGn  182 (434)
T 2zjs_Y          159 VTQVAGIALLLWMAERITE-YGIGN  182 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHCCC
T ss_conf             9999999999999877764-40378


No 9  
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=5.27  E-value=1.1e+02  Score=10.37  Aligned_cols=7  Identities=43%  Similarity=0.790  Sum_probs=0.0

Q ss_pred             EEECHHH
Q ss_conf             3010789
Q gi|254780841|r  139 GFPAVWN  145 (246)
Q Consensus       139 GlP~pa~  145 (246)
                      |+|+||.
T Consensus         1 GfPspA~    7 (116)
T 1umu_A            1 GFPSPAA    7 (116)
T ss_dssp             -------
T ss_pred             CCCCCHH
T ss_conf             9452646


No 10 
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=5.23  E-value=1.2e+02  Score=10.22  Aligned_cols=8  Identities=25%  Similarity=0.430  Sum_probs=0.0

Q ss_pred             HHHHHHHH
Q ss_conf             55799999
Q gi|254780841|r   82 DNIIDYLT   89 (246)
Q Consensus        82 DSLaD~vs   89 (246)
                      |.+||++|
T Consensus         5 D~iaD~lt   12 (130)
T 1i6u_A            5 DPLANALN   12 (130)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
T ss_conf             77999999


Done!