RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
(246 letters)
>gnl|CDD|31376 COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].
Length = 234
Score = 137 bits (346), Expect = 3e-33
Identities = 66/231 (28%), Positives = 97/231 (41%), Gaps = 11/231 (4%)
Query: 17 AFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNW 76
+++TA G F+ L + AA + R + LALI+DG DG +ARK+ K
Sbjct: 9 YLLPNLITALGLFLGLLSIVAALEGRFEAALLLILLALILDGLDGRVARKLNAKSAF--- 65
Query: 77 SGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVISSSIYYAYTNMKTEEH- 135
G LD++ D +++ V PA LY S L +AA + V+ ++ A N+KT +
Sbjct: 66 -GAELDSLADLVSFGVAPALLLYSS-GLNTGPLGLLAALLYVLCGALRLARFNVKTNDDK 123
Query: 136 -FFSGFPAVWNMVVF-SLIALNASVLVSTIVITTSVILTFVPVNFLHPIRVVRLRPLNFF 193
FF G P VV L+ L S+ + S IL + + + I L+ LN
Sbjct: 124 NFFIGLPIPAAAVVVVLLVLLYHSLPTGLATVLLSGILLLLSILMVSNIPFPSLKKLNAL 183
Query: 194 VFVCWCLLGFYALIS---NFQVCRWFSFAFSVCGIYLYSIGAILQIFPNLG 241
V V L G L + W G L + Q F LG
Sbjct: 184 VRVVLLLAGILLLALLALVLILYPWLLLLVIASGYLLSIPIRVRQWFKKLG 234
>gnl|CDD|144601 pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase.
All of these members have the ability to catalyse the
displacement of CMP from a CDP-alcohol by a second
alcohol with formation of a phosphodiester bond and
concomitant breaking of a phosphoride anhydride bond.
Length = 96
Score = 46.4 bits (111), Expect = 7e-06
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 18 FSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWS 77
+ +++T + L + + L LA ++DG DG +AR+ L
Sbjct: 3 ITPNLITLLRLILGLLAALLLLLGQYLLAALLLLLAGLLDGLDGKLARRTGQSSPL---- 58
Query: 78 GDTLDNIIDYLTYVVLPAFALY 99
G LD++ D L+ V L L
Sbjct: 59 GALLDSVADRLSDVALLLGLLL 80
>gnl|CDD|145907 pfam03006, HlyIII, Haemolysin-III related. Members of this family
are integral membrane proteins. This family includes a
protein with hemolytic activity from Bacillus cereus. It
has been proposed that YOL002c encodes a Saccharomyces
cerevisiae protein that plays a key role in metabolic
pathways that regulate lipid and phosphate metabolism.
In eukaryotes, members are seven-transmembrane pass
molecules found to encode functional receptors with a
broad range of apparent ligand specificities, including
progestin and adipoQ receptors, and hence have been
named PAQR proteins. The mammalian members include
progesterone binding proteins. Unlike the case with GPCR
receptor proteins, the evolutionary ancestry of the
members of this family can be traced back to the
Archaea.
Length = 207
Score = 28.4 bits (64), Expect = 2.1
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 186 RLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAIL 234
R R L +++ LG + V G LY++GAI
Sbjct: 128 RFRWLRTVLYLLMGWLGIIPIKHLILALGGGGLVLLVLGGVLYTLGAIF 176
>gnl|CDD|36830 KOG1617, KOG1617, KOG1617, CDP-alcohol
phosphatidyltransferase/Phosphatidylglycerol-phosphate
synthase [Lipid transport and metabolism].
Length = 243
Score = 27.6 bits (61), Expect = 3.6
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 52 LALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSS 111
+A I D DG IARKMR+ + + D ++ + + L L G
Sbjct: 103 VAGITDLLDGYIARKMRLGSIAGSVLDPLADKVLITCLTLCMVYADLIPVPLASIIIGRD 162
Query: 112 VAAGMMVISSSIYYAYTNMKTEEHF 136
V ++++ + Y Y N+K
Sbjct: 163 V----LLVAGAFYLRYQNLKLPYTL 183
>gnl|CDD|176093 cd08543, SAM_PNT-ETS-2, Sterile alpha motif (SAM)/Pointed domain of
ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS
transcriptional regulators is a protein-protein
interaction domain. It contains a docking site for Cdk10
(cyclin-dependent kinase 10), a member of the Cdc2
kinase family. The interaction between ETS-2 and Cdk10
kinase inhibits ETS-2 transactivation activity in
mammals. ETS-2 is also regulated by ERK2 MAP kinase.
ETS-2, which is phosphorylated by ERK2, can interact
with coactivators and enhance transactivation. ETS-2
transcriptional activators are involved in embryonic
development and cell cycle control. The Ets-2 gene is a
proto-oncogene. It is overexpressed in breast and
prostate cancer cells and its overexpression is
necessary for transformation of such cells. Members of
ETS-2 subfamily are potential molecular targets for
selective cancer therapy.
Length = 89
Score = 27.5 bits (61), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 211 QVCRWFSFA---FSVCGIYLYSIGAILQIFPNLGKKR 244
QVC+W +A FS+ + G Q NLGK+R
Sbjct: 26 QVCQWLLWATNEFSLVNVNFQQFGMNGQELCNLGKER 62
>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
(glycosyltransferases) [Cell wall/membrane/envelope
biogenesis].
Length = 862
Score = 26.9 bits (59), Expect = 5.6
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 144 WNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFL----HPIRVVRLRPLNFFVFVCWC 199
L+ +L I+ F NF+ R N F + +
Sbjct: 614 NLHNSLRYHTLHVEMLYFAIL---GPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFI 670
Query: 200 LLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFP 238
LL + + + + LYS+ I +
Sbjct: 671 LLCLTFSLFMQLLGARPRGNVYMLAMSLYSVLIIYSLLC 709
>gnl|CDD|113849 pfam05094, LEF-9, Late expression factor 9 (LEF-9). Late
expression factor 9 (LEF-9) is one of the primary
components of RNA polymerase produced by baculoviruses.
LEF-9 is homologous to the largest beta-subunit of
prokaryotic DNA-directed RNA polymerase.
Length = 487
Score = 26.2 bits (58), Expect = 7.5
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 119 ISSSIYYAYTNMKTEEHFFSGFP---AVWNM 146
+S IYY Y N+ E P A+W M
Sbjct: 298 VSQQIYYLYKNINKIERLLKSMPILYALWQM 328
>gnl|CDD|38106 KOG2895, KOG2895, KOG2895, Uncharacterized conserved protein
[Function unknown].
Length = 408
Score = 26.5 bits (58), Expect = 7.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 131 KTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLHPIR 183
K+E+ F F + +++I S++ +I TSV + +P IR
Sbjct: 176 KSEKLFMVCFSFAEGTLAWAVIVWRNSLVFHSIDKITSVFIHLLPPLVFFTIR 228
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 26.4 bits (58), Expect = 7.8
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 193 FVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNLG 241
F + + +GFY S F F F F + + ++ + PNL
Sbjct: 1218 FFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTT-LGMM-LVSLTPNLQ 1264
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.142 0.451
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,100,450
Number of extensions: 169388
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 54
Length of query: 246
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,297,318
Effective search space: 666084290
Effective search space used: 666084290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.5 bits)