RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)



>gnl|CDD|161896 TIGR00473, pssA, CDP-diacylglycerol--serine
           O-phosphatidyltransferase.  This enzyme,
           CDP-diacylglycerol--serine O-phosphatidyltransferase, is
           involved in phospholipid biosynthesis catalyzing the
           reaction CDP-diacylglycerol + L-serine = CMP +
           L-1-phosphatidylserine. Members of this family do not
           bear any significant sequence similarity to the
           corresponding E.coli protein.
          Length = 151

 Score = 36.7 bits (85), Expect = 0.006
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 24  TAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDN 83
           T   +F  FL + +  +Y IV   + + L++  D  DG +ARK           G  LD+
Sbjct: 1   TMLNAFSGFLSILSLLRYTIVRACFLILLSMFFDFLDGRVARKTNRVSDF----GKELDS 56

Query: 84  IIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVISSSIYYAYTNMKT-EEHFFSGFPA 142
           + D +++ V PA   Y       + G  VAA +  +   +  A  N+   +   F G P 
Sbjct: 57  LADVVSFGVAPAALAYSIGNFQ-TIGILVAA-LFFLCGILRLARFNVLNVKLPSFIGLPI 114

Query: 143 -VWNMVVFSLIALNASVLVSTIVITTSVIL 171
               ++V SL+ L + +L +      SV++
Sbjct: 115 PFAALLVVSLVLLYSYLLAAIAACLLSVLM 144


>gnl|CDD|149172 pfam07948, Nairovirus_M, Nairovirus M polyprotein-like.  The
           sequences in this family are similar to the Dugbe virus
           M polyprotein precursor, which includes glycoproteins G1
           and G2. Both are thought to be inserted in the membrane
           of the Golgi complex of the infected host cell, and G1
           is known to have a role in infection of vertebrate
           hosts.
          Length = 645

 Score = 27.5 bits (61), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 215 WFSFAFSVCGIYLYSIGAILQIFPNLGKK-RQY 246
           WFSF + +  I+   +  +L +   LGKK +QY
Sbjct: 457 WFSFGYVITCIFCKVLFYLLIVIGTLGKKLKQY 489


>gnl|CDD|178545 PLN02960, PLN02960, alpha-amylase.
          Length = 897

 Score = 27.1 bits (60), Expect = 4.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 162 TIVITTSVILTFVPVNFLHPIRVVRLRPLNFFVFV----CWCLL--GFYALISNF 210
           T  +  S  L F+   F HP RV   R  N F F      W LL  G +A + +F
Sbjct: 722 TFTLGGSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSF 776


>gnl|CDD|173384 PTZ00090, PTZ00090, 40S ribosomal protein S11; Provisional.
          Length = 233

 Score = 27.2 bits (60), Expect = 4.6
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 8   KNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQ------YRIVDMFWWLGLALIIDGFDG 61
           KN  H +V   S +  T FGSF   +G     Q      YRI +        L I   D 
Sbjct: 127 KNNVHAQVVNKSKNYKTVFGSFAGNVGFRKKLQQSERCAYRIGENIAKKCRRLGIFAVDI 186

Query: 62  PIARKMRVKEVL 73
              R MRV+ VL
Sbjct: 187 KFRRIMRVETVL 198


>gnl|CDD|161876 TIGR00433, bioB, biotin synthetase.  Catalyzes the last step of the
           biotin biosynthesis pathway.
          Length = 296

 Score = 26.6 bits (59), Expect = 6.1
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 174 VPVNFLHPIRVVRL---RPLNFFVFV 196
           VP+NFL  I+   L   + L+    +
Sbjct: 204 VPINFLVKIKGTPLADNKELSADDAL 229


>gnl|CDD|178468 PLN02880, PLN02880, tyrosine decarboxylase.
          Length = 490

 Score = 26.4 bits (58), Expect = 6.7
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 25/116 (21%)

Query: 69  VKEVLPNWSG---DTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVISSSIYY 125
           ++E+LP+ +    +TLD ++D +   +LP    +Q                    S  Y+
Sbjct: 47  LRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQ--------------------SPNYF 86

Query: 126 AY--TNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFL 179
           AY  +N            A  N+V FS I   A+  +  IV+     L  +P  FL
Sbjct: 87  AYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFL 142


>gnl|CDD|163327 TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase,
           MSMEG_4879 family.  Coenzyme F420 is produced by
           methanogenic archaea, a number of the Actinomycetes
           (including Mycobacterium tuberculosis), and rare members
           of other lineages. The resulting information-rich
           phylogenetic profile identifies candidate F420-dependent
           oxidoreductases within the family of luciferase-like
           enzymes (pfam00296), where the species range for the
           subfamily encompasses many F420-positive genomes without
           straying beyond. This family is uncharacterized, and
           named for member MSMEG_4879 from Mycobacterium
           smegmatis.
          Length = 265

 Score = 26.5 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 139 GFPAVWNMVVFSLIALNASVL----VSTIVITTSVILTFVPVNFLHPI 182
           G  + W   V+   AL A  L    V  I + T+V    VP    HP+
Sbjct: 12  GLDSAWLGQVYGYDALTALALVGRAVPGIELGTAV----VPTYPRHPL 55


>gnl|CDD|152843 pfam12409, P_ATPase, P-type ATPase transporter.  This domain family
           is found in eukaryotes, and is typically between 110 and
           126 amino acids in length. The family is found in
           association with pfam00122, pfam00702. P-type ATPases
           comprise a large superfamily of proteins, present in
           both prokaryotes and eukaryotes, that transport
           inorganic cations and other substrates across cell
           membranes.
          Length = 114

 Score = 26.4 bits (59), Expect = 7.8
 Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 5/25 (20%)

Query: 192 FFVFVCWCLLGFYALISNFQVCRWF 216
            +  +C   LG   L+      RWF
Sbjct: 19  LYYLLCVLTLGLLYLL-----LRWF 38


>gnl|CDD|180492 PRK06256, PRK06256, biotin synthase; Validated.
          Length = 336

 Score = 25.9 bits (58), Expect = 9.3
 Identities = 6/9 (66%), Positives = 9/9 (100%)

Query: 174 VPVNFLHPI 182
           +P+NFL+PI
Sbjct: 233 IPINFLNPI 241


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,066,782
Number of extensions: 260340
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 40
Length of query: 246
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,028,145
Effective search space: 624362475
Effective search space used: 624362475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.4 bits)