RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] (246 letters) >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Score = 25.6 bits (56), Expect = 4.0 Identities = 4/18 (22%), Positives = 9/18 (50%) Query: 73 LPNWSGDTLDNIIDYLTY 90 +PN L +I++ + Sbjct: 48 VPNVRSSVLQKVIEWAEH 65 >d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 325 Score = 25.4 bits (55), Expect = 4.0 Identities = 10/47 (21%), Positives = 14/47 (29%) Query: 169 VILTFVPVNFLHPIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRW 215 V VP N + LN + CL G + + C Sbjct: 194 VKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHL 240 >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Score = 25.6 bits (55), Expect = 4.2 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%) Query: 180 HPIRV-VRLRPLN 191 H I V VR RPLN Sbjct: 30 HRICVCVRKRPLN 42 >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Score = 25.0 bits (55), Expect = 5.3 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 8/37 (21%) Query: 54 LIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTY 90 ++ D P+ LPN + L +I + T+ Sbjct: 29 MLEDLGMDPV--------PLPNVNAAILKKVIQWCTH 57 >d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]} Length = 215 Score = 25.2 bits (54), Expect = 5.4 Identities = 9/44 (20%), Positives = 17/44 (38%) Query: 48 WWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYV 91 WL L ++I D + + P+W +T + L + Sbjct: 121 GWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSL 164 >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Score = 24.7 bits (54), Expect = 8.1 Identities = 4/18 (22%), Positives = 5/18 (27%) Query: 73 LPNWSGDTLDNIIDYLTY 90 L + Y TY Sbjct: 46 FREIPSHVLSKVCMYFTY 63 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.331 0.142 0.451 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 953,151 Number of extensions: 42760 Number of successful extensions: 123 Number of sequences better than 10.0: 1 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 15 Length of query: 246 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 163 Effective length of database: 1,268,006 Effective search space: 206684978 Effective search space used: 206684978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 52 (24.5 bits)