RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)



>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex
          Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 72

 Score = 25.6 bits (56), Expect = 4.0
 Identities = 4/18 (22%), Positives = 9/18 (50%)

Query: 73 LPNWSGDTLDNIIDYLTY 90
          +PN     L  +I++  +
Sbjct: 48 VPNVRSSVLQKVIEWAEH 65


>d2hava1 c.94.1.2 (A:340-664) Transferrin {Rabbit (Oryctolagus
           cuniculus) [TaxId: 9986]}
          Length = 325

 Score = 25.4 bits (55), Expect = 4.0
 Identities = 10/47 (21%), Positives = 14/47 (29%)

Query: 169 VILTFVPVNFLHPIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRW 215
           V    VP N          + LN   +   CL G    +  +  C  
Sbjct: 194 VKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEEYANCHL 240


>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
           10090]}
          Length = 362

 Score = 25.6 bits (55), Expect = 4.2
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)

Query: 180 HPIRV-VRLRPLN 191
           H I V VR RPLN
Sbjct: 30  HRICVCVRKRPLN 42


>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 25.0 bits (55), Expect = 5.3
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 8/37 (21%)

Query: 54 LIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTY 90
          ++ D    P+         LPN +   L  +I + T+
Sbjct: 29 MLEDLGMDPV--------PLPNVNAAILKKVIQWCTH 57


>d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 215

 Score = 25.2 bits (54), Expect = 5.4
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 48  WWLGLALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYV 91
            WL L ++I   D    +    +   P+W  +T   +   L  +
Sbjct: 121 GWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSL 164


>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 96

 Score = 24.7 bits (54), Expect = 8.1
 Identities = 4/18 (22%), Positives = 5/18 (27%)

Query: 73 LPNWSGDTLDNIIDYLTY 90
                  L  +  Y TY
Sbjct: 46 FREIPSHVLSKVCMYFTY 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,151
Number of extensions: 42760
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 15
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.5 bits)