BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score =  500 bits (1288), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD 60
           MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD
Sbjct: 1   MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD 60

Query: 61  GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120
           GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS
Sbjct: 61  GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120

Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180
           SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH
Sbjct: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180

Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL 240
           PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL
Sbjct: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL 240

Query: 241 GKKRQY 246
           GKKRQY
Sbjct: 241 GKKRQY 246


>gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 298

 Score = 30.0 bits (66), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 14/109 (12%)

Query: 52  LALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNL-LGNSTGS 110
           +A  +DG DG IAR M          G  LD++ D + + V P+   Y + L   ++ G 
Sbjct: 90  VAAFLDGIDGRIARFMEATSKF----GAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGW 145

Query: 111 SVAAGMMVISSSIYYAYTNMKTE--------EHFFSGFPAVWNMVVFSL 151
           S+A  M  I+ S+  A  N+  +          +F G PA    ++  L
Sbjct: 146 SIAL-MYTIAISLRLARFNIMNDCDEKDNWKSEYFVGVPAPLGAILLML 193


>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 554

 Score = 25.8 bits (55), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 145 NMVVFSLIALNASVLVSTIVITTSVILTFVP---VNFLHPIRVVRLRPLNFFV------- 194
           ++V+    A   + ++S  +I    I + +P    +  HP   V  R L +F+       
Sbjct: 41  SVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQ 100

Query: 195 FVCWCLLGF-----YALISNFQVCRWFSFAFSVCGIYLY 228
              +CL  F     + ++S  QVCRW        G+ +Y
Sbjct: 101 IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIY 139


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 503

 Score = 25.0 bits (53), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 191 NFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYL---YSIGA 232
           N+F      LL FY+ +S   + ++F F   + G+ +   YSIG 
Sbjct: 193 NYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGK 237


>gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 190

 Score = 24.3 bits (51), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 221 SVCGIYLYSIGAILQIFPNLGK 242
            VCG+Y +  G+IL+I   + K
Sbjct: 118 QVCGVYNFGAGSILEIKNTMEK 139


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.142    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,425
Number of Sequences: 1233
Number of extensions: 5926
Number of successful extensions: 19
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 246
length of database: 328,796
effective HSP length: 72
effective length of query: 174
effective length of database: 240,020
effective search space: 41763480
effective search space used: 41763480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 37 (18.9 bits)