BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] (246 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780841|ref|YP_003065254.1| phosphatidylcholine synthase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 500 bits (1288), Expect = e-144, Method: Compositional matrix adjust. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD 60 MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD Sbjct: 1 MIGKMNYKNFSHKRVSAFSVHILTAFGSFIAFLGVTAAAQYRIVDMFWWLGLALIIDGFD 60 Query: 61 GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120 GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS Sbjct: 61 GPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNLLGNSTGSSVAAGMMVIS 120 Query: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH Sbjct: 121 SSIYYAYTNMKTEEHFFSGFPAVWNMVVFSLIALNASVLVSTIVITTSVILTFVPVNFLH 180 Query: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL 240 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL Sbjct: 181 PIRVVRLRPLNFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYLYSIGAILQIFPNL 240 Query: 241 GKKRQY 246 GKKRQY Sbjct: 241 GKKRQY 246 >gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 30.0 bits (66), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 14/109 (12%) Query: 52 LALIIDGFDGPIARKMRVKEVLPNWSGDTLDNIIDYLTYVVLPAFALYQSNL-LGNSTGS 110 +A +DG DG IAR M G LD++ D + + V P+ Y + L ++ G Sbjct: 90 VAAFLDGIDGRIARFMEATSKF----GAQLDSLADVINFGVAPSLVTYIAVLRQAHAFGW 145 Query: 111 SVAAGMMVISSSIYYAYTNMKTE--------EHFFSGFPAVWNMVVFSL 151 S+A M I+ S+ A N+ + +F G PA ++ L Sbjct: 146 SIAL-MYTIAISLRLARFNIMNDCDEKDNWKSEYFVGVPAPLGAILLML 193 >gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 25.8 bits (55), Expect = 0.77, Method: Compositional matrix adjust. Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 145 NMVVFSLIALNASVLVSTIVITTSVILTFVP---VNFLHPIRVVRLRPLNFFV------- 194 ++V+ A + ++S +I I + +P + HP V R L +F+ Sbjct: 41 SVVILEKSAEVGAHILSGAIIDPIGIDSLLPRWREDKGHPFHTVVKRDLYWFLNAQRSIQ 100 Query: 195 FVCWCLLGF-----YALISNFQVCRWFSFAFSVCGIYLY 228 +CL F + ++S QVCRW G+ +Y Sbjct: 101 IPHFCLPDFMDNKEHYIVSLGQVCRWLKNKAEALGVEIY 139 >gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 503 Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Query: 191 NFFVFVCWCLLGFYALISNFQVCRWFSFAFSVCGIYL---YSIGA 232 N+F LL FY+ +S + ++F F + G+ + YSIG Sbjct: 193 NYFFNKTRGLLSFYSALSEHHLFKYFVFLIILLGMAIGVSYSIGK 237 >gi|254780713|ref|YP_003065126.1| 16S rRNA-processing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 24.3 bits (51), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 221 SVCGIYLYSIGAILQIFPNLGK 242 VCG+Y + G+IL+I + K Sbjct: 118 QVCGVYNFGAGSILEIKNTMEK 139 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.331 0.142 0.451 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 152,425 Number of Sequences: 1233 Number of extensions: 5926 Number of successful extensions: 19 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 7 length of query: 246 length of database: 328,796 effective HSP length: 72 effective length of query: 174 effective length of database: 240,020 effective search space: 41763480 effective search space used: 41763480 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 37 (18.9 bits)