HHsearch alignment for GI: 254780842 and conserved domain: COG1206
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis].
Probab=96.55 E-value=0.0019 Score=44.22 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC------CCCEEEECHHH---HHHHHHCCCHHH-HHHCCCCC
Q ss_conf 970029999790899999999997898599982885555------78368887889---999998899478-88604712
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ------DLRTTMLMGEG---IDFLKEINVWDF-LQDIAEPV 70 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~------~~r~~~l~~~s---~~~L~~lGl~~~-l~~~~~~~ 70 (384)
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSli 80 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLI 80 (439)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98772589756544519999998769837999704566897544565243021255464034444578899999721178
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCC-CCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 341899425765545444345022287531-201110000000012366479832342056530268717898
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAF-GYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTI 142 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v 142 (384)
T Consensus 81 -----i-------------~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~--dg~~v 133 (439)
T COG1206 81 -----I-------------EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP--DGITV 133 (439)
T ss_pred -----H-------------HHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCCEE
T ss_conf -----6-------------64154068887604661767789999998539977987110146899--88579