HHsearch alignment for GI: 254780842 and conserved domain: COG1252
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].
Probab=96.08 E-value=0.0065 Score=40.29 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 1100000000123664798323420565302687178983023201211123530375432000
Q gi|254780842|r 104 IPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 104 i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~ 167 (384)
T Consensus 54 l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V--~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 54 LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV--TLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred CCHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEE--EECCCCCCCCCEEEEECCCCCCCCC
T ss_conf 7756521308998423574489997899971567989--9578870236389994587667689