HHsearch alignment for GI: 254780842 and conserved domain: COG3634
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.62 E-value=5.8e-05 Score=55.32 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=73.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 002999979089999999999789859998-2885555783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALV-SPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~ii-E~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGG--------------QvldT~~IENfI---sv~~----------- 262 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG--------------QVLDTMGIENFI---SVPE----------- 262 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC--------------EECCCCCHHHEE---CCCC-----------
T ss_conf 834999868863167899998612111001565188--------------200000333300---5654-----------
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECC---CCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 554544434502228753120111000000001236647983234205653026---87178983023201211123530
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQI---GEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~---~~~~v~v~~~dg~~i~adlvVgA 158 (384)
T Consensus 263 ----------------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIls 320 (520)
T COG3634 263 ----------------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILA 320 (520)
T ss_pred ----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCEEEEECCCCEECCCEEEEE
T ss_conf ----------------------5466899999998764682455334342020157888607999547835113169984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 375432000378733222243047876
Q gi|254780842|r 159 DGRNSSVRRQMGYGENKWSYPQKALVL 185 (384)
Q Consensus 159 DG~~S~vR~~l~~~~~~~~y~~~~l~~ 185 (384)
T Consensus 321 tGAr--WR-n~nvPGE~-e~rnKGVay 343 (520)
T COG3634 321 TGAR--WR-NMNVPGED-EYRNKGVAY 343 (520)
T ss_pred CCCC--HH-CCCCCCHH-HHHHCCEEE
T ss_conf 2764--20-08998568-873178266