HHsearch alignment for GI: 254780842 and conserved domain: COG3634

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.62  E-value=5.8e-05  Score=55.32  Aligned_cols=129  Identities=23%  Similarity=0.323  Sum_probs=73.5

Q ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             002999979089999999999789859998-2885555783688878899999988994788860471234189942576
Q gi|254780842|r    3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALV-SPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR   81 (384)
Q Consensus         3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~ii-E~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (384)
T Consensus       211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGG--------------QvldT~~IENfI---sv~~-----------  262 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG--------------QVLDTMGIENFI---SVPE-----------  262 (520)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC--------------EECCCCCHHHEE---CCCC-----------
T ss_conf             834999868863167899998612111001565188--------------200000333300---5654-----------


Q ss_pred             CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECC---CCEEEEEECCCCCEEEEEEEEEE
Q ss_conf             554544434502228753120111000000001236647983234205653026---87178983023201211123530
Q gi|254780842|r   82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQI---GEEEVTILLSTGQQIVGQFLIGS  158 (384)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~---~~~~v~v~~~dg~~i~adlvVgA  158 (384)
T Consensus       263 ----------------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIls  320 (520)
T COG3634         263 ----------------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILA  320 (520)
T ss_pred             ----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCEEEEECCCCEECCCEEEEE
T ss_conf             ----------------------5466899999998764682455334342020157888607999547835113169984


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             375432000378733222243047876
Q gi|254780842|r  159 DGRNSSVRRQMGYGENKWSYPQKALVL  185 (384)
Q Consensus       159 DG~~S~vR~~l~~~~~~~~y~~~~l~~  185 (384)
T Consensus       321 tGAr--WR-n~nvPGE~-e~rnKGVay  343 (520)
T COG3634         321 TGAR--WR-NMNVPGED-EYRNKGVAY  343 (520)
T ss_pred             CCCC--HH-CCCCCCHH-HHHHCCEEE
T ss_conf             2764--20-08998568-873178266