HHsearch alignment for GI: 254780842 and conserved domain: PRK08020

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed.
Probab=100.00  E-value=0  Score=568.31  Aligned_cols=375  Identities=24%  Similarity=0.427  Sum_probs=342.3

Q ss_pred             CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-------CCCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCC
Q ss_conf             97--00299997908999999999978985999828855-------5578368887889999998899478886-04712
Q gi|254780842|r    1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-------LQDLRTTMLMGEGIDFLKEINVWDFLQD-IAEPV   70 (384)
Q Consensus         1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-------~~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~~~   70 (384)
T Consensus         1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~   80 (391)
T PRK08020          1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPY   80 (391)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf             99999848999936999999999986699789994899876665579873389878899999998888487786256871


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCE
Q ss_conf             3418994257655454443450222875312011100000000123664798323-420565302687178983023201
Q gi|254780842|r   71 SSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQ  149 (384)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~  149 (384)
T Consensus        81 ~~~~~~~~~~-----~~~~f~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~  155 (391)
T PRK08020         81 RRLETWEWET-----AHVVFDAAELKLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELADGET  155 (391)
T ss_pred             EEEEEECCCC-----CEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEECCCCE
T ss_conf             4898612788-----55872544328975401212699999999999838996999588026889749868999489999


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf             21112353037543200037873322224304787641147886117887227875421000123201126750756732
Q gi|254780842|r  150 IVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEAD  229 (384)
Q Consensus       150 i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~  229 (384)
T Consensus       156 i~a~lvIgADG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~~~~~a~q~f~~~Gp~alLPl~~~~~slVw~~~~~~~~  235 (391)
T PRK08020        156 IQAKLVIGADGANSQVRQMAGIGVHAWQYAQSCMLITVECENDPGDSTWQQFTPDGPRAFLPLFDNWASLVWYDSPARIR  235 (391)
T ss_pred             EEECEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCHHHHH
T ss_conf             98379999079970544522788635787624899986146777763289980899778862589868999947877788


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             45532234678877630675467621110223202233430456537942101100113844565321121238999999
Q gi|254780842|r  230 FYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL  309 (384)
Q Consensus       230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~  309 (384)
T Consensus       236 ~l~~~~~~~~~~~l~~~~~~~lg~i~~~~~-~~fpl~~~~a~~~~~~rvvLiGDAAH~ihP~aGQGlNlGl~Da~~La~~  314 (391)
T PRK08020        236 QLQAMSMAQLQAEIAAHFPSRLGAVTPLAA-GAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDV  314 (391)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCEEEEEEE-EECHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             765199999999999873133260579753-0204765334364059888861423148954234142569999999999


Q ss_pred             HHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf             8525-----79907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r  310 FQSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL  381 (384)
Q Consensus       310 l~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl  381 (384)
T Consensus       315 L~~~~~~~~~~g~~~~L~~Y~~~R~~d~~~~~~~~d~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lk~~~~~~a~Gl  391 (391)
T PRK08020        315 LVNARSYGEAWASYPVLKRYQRRRMADNFMMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL  391 (391)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf             99998608996609999999999899999999999999999869967999999999999854999999999986699