HHsearch alignment for GI: 254780842 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.70  E-value=0.00033  Score=49.79  Aligned_cols=100  Identities=15%  Similarity=0.228  Sum_probs=79.6

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf             29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r    5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT   84 (384)
Q Consensus         5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~   84 (384)
T Consensus       180 slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------------Lp~----------------------~-----  217 (481)
T TIGR01350       180 SLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------------LPG----------------------E-----  217 (481)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------------CCC----------------------C-----
T ss_conf             6699878667788999998539808999457500---------------354----------------------3-----


Q ss_pred             CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCC-CCCCCCEEEE--EECCCCEEEE--EECCCC---CEEEEEEEE
Q ss_conf             5444345022287531201110000000012366479-8323420565--3026871789--830232---012111235
Q gi|254780842|r   85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDP-LIHCFDALAN--EIQIGEEEVT--ILLSTG---QQIVGQFLI  156 (384)
Q Consensus        85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~-~~~~~~~~v~--~i~~~~~~v~--v~~~dg---~~i~adlvV  156 (384)
T Consensus       218 ---------------------D~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vL  276 (481)
T TIGR01350       218 ---------------------DAEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVL  276 (481)
T ss_pred             ---------------------CHHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             ---------------------16899999999974498498548544233577528789999998799805889873999


Q ss_pred             EECCCCCCCCC
Q ss_conf             30375432000
Q gi|254780842|r  157 GSDGRNSSVRR  167 (384)
Q Consensus       157 gADG~~S~vR~  167 (384)
T Consensus       277 vavGR~pn~~~  287 (481)
T TIGR01350       277 VAVGRKPNTEG  287 (481)
T ss_pred             EEECCCCCCCC
T ss_conf             98424347676