HHsearch alignment for GI: 254780842 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.70 E-value=0.00033 Score=49.79 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=79.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
T Consensus 180 slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------------Lp~----------------------~----- 217 (481)
T TIGR01350 180 SLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------------LPG----------------------E----- 217 (481)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------------CCC----------------------C-----
T ss_conf 6699878667788999998539808999457500---------------354----------------------3-----
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCC-CCCCCCEEEE--EECCCCEEEE--EECCCC---CEEEEEEEE
Q ss_conf 5444345022287531201110000000012366479-8323420565--3026871789--830232---012111235
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDP-LIHCFDALAN--EIQIGEEEVT--ILLSTG---QQIVGQFLI 156 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~-~~~~~~~~v~--~i~~~~~~v~--v~~~dg---~~i~adlvV 156 (384)
T Consensus 218 ---------------------D~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vL 276 (481)
T TIGR01350 218 ---------------------DAEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVL 276 (481)
T ss_pred ---------------------CHHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf ---------------------16899999999974498498548544233577528789999998799805889873999
Q ss_pred EECCCCCCCCC
Q ss_conf 30375432000
Q gi|254780842|r 157 GSDGRNSSVRR 167 (384)
Q Consensus 157 gADG~~S~vR~ 167 (384)
T Consensus 277 vavGR~pn~~~ 287 (481)
T TIGR01350 277 VAVGRKPNTEG 287 (481)
T ss_pred EEECCCCCCCC
T ss_conf 98424347676