HHsearch alignment for GI: 254780842 and conserved domain: TIGR01373

>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.14  E-value=1.8e-05  Score=59.06  Aligned_cols=182  Identities=20%  Similarity=0.234  Sum_probs=100.6

Q ss_pred             CEEEEEEECCCHHHHHHHHHHHH-CCC-EEEEEECCC-----CCCC---CCEEEECHHHHHHHH-HCCCHHHHHH-----
Q ss_conf             70029999790899999999997-898-599982885-----5557---836888788999999-8899478886-----
Q gi|254780842|r    2 NHFDVIIIGSGLAGSVAAIGAAK-KGF-LTALVSPRS-----FLQD---LRTTMLMGEGIDFLK-EINVWDFLQD-----   65 (384)
Q Consensus         2 ~~~DV~IvGaG~aGl~lA~~L~~-~g~-~v~iiE~~~-----~~~~---~r~~~l~~~s~~~L~-~lGl~~~l~~-----   65 (384)
T Consensus        29 ~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLweGLs~dLNYN  108 (407)
T TIGR01373        29 PEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNYN  108 (407)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHCCHH
T ss_conf             85467888688606899999886469406899850621688664342146541026452237888988861200120200


Q ss_pred             --------------------CCCCCCCEEEEECCCCCCC--------CCCCCCCCHHCCCCCCCCHHH------HCCHHH
Q ss_conf             --------------------0471234189942576554--------544434502228753120111------000000
Q gi|254780842|r   66 --------------------IAEPVSSFRLVDITDRLIT--------APDAIFHSSEIGLDAFGYNIP------NHVLME  111 (384)
Q Consensus        66 --------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~------r~~L~~  111 (384)
T Consensus       109 vM~SqRG~~nL~H~~~~~~~~~R~v~A~r~~Gv-DaELl~~~~v~~~~P~ld~s-~daRfPv~Gg~~QrRgGtaRHDAVA  186 (407)
T TIGR01373       109 VMFSQRGVLNLAHSTADMDDYARRVNAMRLNGV-DAELLSPEQVKRLIPILDFS-KDARFPVVGGLLQRRGGTARHDAVA  186 (407)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCC-CHHHCCHHHHHHHCCCCCCC-CCCCCCCCCCCHHCCCCCEEEHHHH
T ss_conf             112133234321888787643141001110364-63206878999618811288-8888630054001378710210122


Q ss_pred             -HHHHHHHHCCCCCCCCEEEEEECCC-CEEEE-EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             -0012366479832342056530268-71789-83023201211123530375432000378733222243047876
Q gi|254780842|r  112 -SFAEKISQDPLIHCFDALANEIQIG-EEEVT-ILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVL  185 (384)
Q Consensus       112 -~L~~~~~~~~~~~~~~~~v~~i~~~-~~~v~-v~~~dg~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~  185 (384)
T Consensus       187 WGYARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh~LQA~Vs  263 (407)
T TIGR01373       187 WGYARGADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESHVLQALVS  263 (407)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHHEEEC
T ss_conf             21464230058403222320231650687588654487410103788887177589897637426621101011130