HHsearch alignment for GI: 254780842 and conserved domain: TIGR01373
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.14 E-value=1.8e-05 Score=59.06 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=100.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHH-CCC-EEEEEECCC-----CCCC---CCEEEECHHHHHHHH-HCCCHHHHHH-----
Q ss_conf 70029999790899999999997-898-599982885-----5557---836888788999999-8899478886-----
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAK-KGF-LTALVSPRS-----FLQD---LRTTMLMGEGIDFLK-EINVWDFLQD----- 65 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~-~g~-~v~iiE~~~-----~~~~---~r~~~l~~~s~~~L~-~lGl~~~l~~----- 65 (384)
T Consensus 29 ~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLweGLs~dLNYN 108 (407)
T TIGR01373 29 PEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNYN 108 (407)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHCCHH
T ss_conf 85467888688606899999886469406899850621688664342146541026452237888988861200120200
Q ss_pred --------------------CCCCCCCEEEEECCCCCCC--------CCCCCCCCHHCCCCCCCCHHH------HCCHHH
Q ss_conf --------------------0471234189942576554--------544434502228753120111------000000
Q gi|254780842|r 66 --------------------IAEPVSSFRLVDITDRLIT--------APDAIFHSSEIGLDAFGYNIP------NHVLME 111 (384)
Q Consensus 66 --------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~------r~~L~~ 111 (384)
T Consensus 109 vM~SqRG~~nL~H~~~~~~~~~R~v~A~r~~Gv-DaELl~~~~v~~~~P~ld~s-~daRfPv~Gg~~QrRgGtaRHDAVA 186 (407)
T TIGR01373 109 VMFSQRGVLNLAHSTADMDDYARRVNAMRLNGV-DAELLSPEQVKRLIPILDFS-KDARFPVVGGLLQRRGGTARHDAVA 186 (407)
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCC-CHHHCCHHHHHHHCCCCCCC-CCCCCCCCCCCHHCCCCCEEEHHHH
T ss_conf 112133234321888787643141001110364-63206878999618811288-8888630054001378710210122
Q ss_pred -HHHHHHHHCCCCCCCCEEEEEECCC-CEEEE-EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -0012366479832342056530268-71789-83023201211123530375432000378733222243047876
Q gi|254780842|r 112 -SFAEKISQDPLIHCFDALANEIQIG-EEEVT-ILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVL 185 (384)
Q Consensus 112 -~L~~~~~~~~~~~~~~~~v~~i~~~-~~~v~-v~~~dg~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~ 185 (384)
T Consensus 187 WGYARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh~LQA~Vs 263 (407)
T TIGR01373 187 WGYARGADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESHVLQALVS 263 (407)
T ss_pred HHHHHHHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHHEEEC
T ss_conf 21464230058403222320231650687588654487410103788887177589897637426621101011130