HHsearch alignment for GI: 254780842 and conserved domain: TIGR01984
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=100.00 E-value=0 Score=576.57 Aligned_cols=372 Identities=30% Similarity=0.424 Sum_probs=352.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CEEEEEECCC------CCC--CCCEEEECHHHHHHHHHCC-----CHHHHHHC
Q ss_conf 2999979089999999999789-----8599982885------555--7836888788999999889-----94788860
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-----FLTALVSPRS------FLQ--DLRTTMLMGEGIDFLKEIN-----VWDFLQDI 66 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-----~~v~iiE~~~------~~~--~~r~~~l~~~s~~~L~~lG-----l~~~l~~~ 66 (384)
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ 80 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPF 80 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 97888565899999999850677557615898656574424686423565046876899999985386331257886013
Q ss_pred -CCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC-CEEEEEECCCCEE-----
Q ss_conf -471234189942576554544434502228753120111000000001236647983234-2056530268717-----
Q gi|254780842|r 67 -AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCF-DALANEIQIGEEE----- 139 (384)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~-~~~v~~i~~~~~~----- 139 (384)
T Consensus 81 ratpI~~IhVSD~g~fG----~~~~~~~~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveql 156 (425)
T TIGR01984 81 RATPIKDIHVSDQGHFG----ATELRASEFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQL 156 (425)
T ss_pred CCCCCCEEEEEECCCEE----EEEECHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECC
T ss_conf 67877516886458300----13412536287645314217899999999986256651125753211210578630005
Q ss_pred ---------EEEEC-CCCC----EEEEEEEEEECC-----CCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCEEEEE
Q ss_conf ---------89830-2320----121112353037-----5432000378733222-24304787641147886117887
Q gi|254780842|r 140 ---------VTILL-STGQ----QIVGQFLIGSDG-----RNSSVRRQMGYGENKW-SYPQKALVLNFQHSMPHNGRCVE 199 (384)
Q Consensus 140 ---------v~v~~-~dg~----~i~adlvVgADG-----~~S~vR~~l~~~~~~~-~y~~~~l~~~~~~~~~~~~~a~~ 199 (384)
T Consensus 157 PradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~S~~r~~~~i~~~~~R~y~QtAlian~~~~~pH~~~A~E 236 (425)
T TIGR01984 157 PRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDANSKVRELLSIATEEHRDYEQTALIANVRVEQPHQGCAFE 236 (425)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 66665510357888308875640555308898558633135678899638981786062003301231003575760684
Q ss_pred ECCCCCCCCCCCCCCC--CEEEEEEECHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEEECCCCCCCHHHHHC
Q ss_conf 2278754210001232--0112675075673245532234678877630-675467621110223202233430456537
Q gi|254780842|r 200 FHKSLGTITQIPLREN--FSSLVWIMESQEADFYYKLPVNEIARRLEQY-LYPVIGKIEVVTDVQIFQLSGMISHCFGKK 276 (384)
Q Consensus 200 ~f~~~G~~a~lP~~~~--~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~ 276 (384)
T Consensus 237 RFt~~GPlALLP~~d~q~~~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~~~~G~r~~yPL~l~~a~~~v~~ 316 (425)
T TIGR01984 237 RFTPHGPLALLPLKDNQYRLSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKITQVGERKAYPLKLVIAEEQVSH 316 (425)
T ss_pred EECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 44777780234678999723889718978999986689889999986512225420574327510043667862101467
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9421011001138445653211212389999998525-----79907999999998679999999999999998636798
Q gi|254780842|r 277 RVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYP 351 (384)
Q Consensus 277 rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 351 (384)
T Consensus 317 R~vliGNAAqTlHPIAGQGfNLGlRDv~~L~~~l~~~~~~~~D~G~~~~L~~Y~~~R~~D~~~t~~lT~~L~~~FsN~~~ 396 (425)
T TIGR01984 317 RVVLIGNAAQTLHPIAGQGFNLGLRDVLTLAEVLIDAREQGKDLGEYALLQEYLRRRQFDRATTIGLTDGLVRLFSNQIP 396 (425)
T ss_pred CEEEEECCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27998651333301455301632899999999988676436888897899999987687789998887877765200348
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 99999999999985083789999998619
Q gi|254780842|r 352 LLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 352 ~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
T Consensus 397 ~l~~~R~LGL~~~~~~pplK~~~~~~aMG 425 (425)
T TIGR01984 397 LLRALRNLGLLALENLPPLKKRLARQAMG 425 (425)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 99985558999973020468999986349