HHsearch alignment for GI: 254780842 and conserved domain: TIGR02279
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=90.19 E-value=0.36 Score=27.43 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=31.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 00299997908999999999978985999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
T Consensus 5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~e 39 (508)
T TIGR02279 5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAE 39 (508)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHH
T ss_conf 10689964685210389999825984887228889