HHsearch alignment for GI: 254780842 and conserved domain: TIGR02731
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.28 E-value=0.013 Score=37.95 Aligned_cols=62 Identities=34% Similarity=0.323 Sum_probs=48.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------C--C---CEE-----EECHHHHHHHHHCCCHHHHHHCC
Q ss_conf 9999790899999999997898599982885555-------7--8---368-----88788999999889947888604
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------D--L---RTT-----MLMGEGIDFLKEINVWDFLQDIA 67 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------~--~---r~~-----~l~~~s~~~L~~lGl~~~l~~~~ 67 (384)
T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqWk~ 80 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQWKE 80 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 5772274556778878763589626863210035502332247886113104554314578999998615022222211