HHsearch alignment for GI: 254780842 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.91 E-value=0.00015 Score=52.35 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=67.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 299997908999999999978---98599982885555783688878899999988994788860471234189942576
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~------y~~~----l------p~~~~g--------------~ 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP------YSGM----L------PGMIAG--------------H 50 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE------ECCH----H------HHHHHC--------------C
T ss_conf 99999960999999999704178998399999988651------6251----6------999740--------------4
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 55454443450222875312011100000000123664798323420565302687178983023201211123530375
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGR 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~ 161 (384)
T Consensus 51 --------~~~~~i~--------------~~~~~~~~~~-gv~~i~~~V~~ID~~~k~--V~~~~g~~l~YD~LViAtGs 105 (364)
T TIGR03169 51 --------YSLDEIR--------------IDLRRLARQA-GARFVIAEATGIDPDRRK--VLLANRPPLSYDVLSLDVGS 105 (364)
T ss_pred --------CCHHHEE--------------CCHHHHHHHC-CCEEEEEEEEEEECCCCE--EEECCCCEEECCEEEEECCC
T ss_conf --------7799922--------------1689999777-949996378999768898--99889988736889994367
Q ss_pred CCCCCCC
Q ss_conf 4320003
Q gi|254780842|r 162 NSSVRRQ 168 (384)
Q Consensus 162 ~S~vR~~ 168 (384)
T Consensus 106 ~~~~~~i 112 (364)
T TIGR03169 106 TTPLSGV 112 (364)
T ss_pred CCCCCCC
T ss_conf 7788999