Query gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 384
No_of_seqs 192 out of 6561
Neff 9.6
Searched_HMMs 39220
Date Mon May 30 03:50:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780842.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01988 Ubi-OHases Ubiquinon 100.0 0 0 629.8 30.8 375 5-380 1-445 (445)
2 PRK07494 2-octaprenyl-6-methox 100.0 0 0 593.7 35.7 382 1-382 1-386 (386)
3 PRK08013 hypothetical protein; 100.0 0 0 574.9 34.3 380 1-384 1-395 (400)
4 PRK05732 2-octaprenyl-6-methox 100.0 0 0 576.7 32.7 378 1-382 1-393 (395)
5 PRK08948 consensus 100.0 0 0 573.0 32.4 375 4-382 1-390 (392)
6 PRK08849 2-octaprenyl-3-methyl 100.0 0 0 569.6 34.2 375 1-381 1-384 (384)
7 PRK08020 ubiF 2-octaprenyl-3-m 100.0 0 0 568.3 33.6 375 1-381 1-391 (391)
8 PRK05714 2-octaprenyl-3-methyl 100.0 0 0 568.0 33.7 377 1-382 1-396 (405)
9 PRK07333 2-octaprenyl-6-methox 100.0 0 0 565.7 33.5 380 3-382 1-391 (403)
10 TIGR01984 UbiH 2-polyprenyl-6- 100.0 0 0 576.6 25.8 372 5-380 1-425 (425)
11 PRK08850 2-octaprenyl-6-methox 100.0 0 0 561.7 34.3 378 1-382 2-393 (405)
12 PRK08774 consensus 100.0 0 0 561.0 34.8 379 1-383 1-392 (402)
13 PRK08773 2-octaprenyl-3-methyl 100.0 0 0 563.3 33.1 377 1-381 4-392 (392)
14 PRK09126 hypothetical protein; 100.0 0 0 559.4 34.0 378 1-382 1-391 (392)
15 PRK07608 hypothetical protein; 100.0 0 0 557.4 33.2 374 1-380 4-389 (389)
16 PRK07364 2-octaprenyl-6-methox 100.0 0 0 552.0 34.2 376 3-382 17-404 (413)
17 PRK06996 hypothetical protein; 100.0 0 0 535.6 32.6 372 3-382 11-396 (397)
18 PRK06617 2-octaprenyl-6-methox 100.0 0 0 538.1 30.6 366 4-382 2-374 (374)
19 COG0654 UbiH 2-polyprenyl-6-me 100.0 0 0 479.3 30.9 377 2-382 1-386 (387)
20 TIGR01989 COQ6 Ubiquinone bios 100.0 0 0 487.6 22.1 367 4-375 1-481 (481)
21 PRK07045 putative monooxygenas 100.0 0 0 428.9 29.6 356 1-361 1-373 (388)
22 PRK06183 mhpA 3-(3-hydroxyphen 100.0 0 0 415.8 31.2 370 1-377 10-391 (554)
23 PRK07588 hypothetical protein; 100.0 0 0 417.9 27.0 369 1-378 1-380 (391)
24 PRK06753 hypothetical protein; 100.0 0 0 413.9 28.2 350 1-365 1-357 (373)
25 PRK06185 hypothetical protein; 100.0 0 0 412.8 28.4 378 1-383 4-397 (409)
26 PRK08244 hypothetical protein; 100.0 0 0 412.0 27.6 369 1-380 1-376 (494)
27 PRK08163 salicylate hydroxylas 100.0 0 0 406.7 27.9 361 1-365 1-374 (396)
28 PRK06184 hypothetical protein; 100.0 0 0 407.4 26.8 339 3-345 6-355 (503)
29 PRK06475 salicylate hydroxylas 100.0 0 0 399.3 28.5 359 3-365 2-378 (400)
30 PRK06847 hypothetical protein; 100.0 0 0 399.5 28.0 345 1-351 4-356 (375)
31 PRK06834 hypothetical protein; 100.0 0 0 396.3 29.8 364 1-381 1-370 (488)
32 PRK08132 hypothetical protein; 100.0 0 0 392.9 28.8 367 3-375 23-400 (549)
33 PRK07190 hypothetical protein; 100.0 0 0 385.1 28.0 335 3-344 5-345 (480)
34 PRK06126 hypothetical protein; 100.0 0 0 376.4 26.7 340 3-347 7-376 (545)
35 pfam01494 FAD_binding_3 FAD bi 100.0 0 0 374.5 26.8 330 3-338 1-348 (349)
36 PRK08294 phenol 2-monooxygenas 100.0 0 0 368.6 27.7 347 3-349 32-415 (634)
37 TIGR03219 salicylate_mono sali 100.0 0 0 368.4 23.2 347 5-358 2-385 (414)
38 PRK05868 hypothetical protein; 100.0 0 0 364.4 25.5 333 1-339 1-345 (372)
39 PRK07538 hypothetical protein; 100.0 0 0 359.1 25.6 332 5-340 2-360 (413)
40 PRK07236 hypothetical protein; 100.0 1.4E-45 0 355.8 25.4 333 1-347 4-376 (386)
41 KOG3855 consensus 100.0 0 0 364.2 16.2 374 2-380 35-479 (481)
42 PRK08243 4-hydroxybenzoate 3-m 100.0 2.2E-43 0 337.5 30.8 370 1-381 1-388 (392)
43 KOG2614 consensus 100.0 1.3E-37 3.3E-42 295.1 17.5 352 4-367 3-399 (420)
44 PRK08255 salicylyl-CoA 5-hydro 100.0 3.8E-32 9.8E-37 255.0 19.5 319 1-348 1-343 (770)
45 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 3.4E-32 8.7E-37 255.3 18.3 367 1-381 1-391 (393)
46 PRK11445 putative oxidoreducta 100.0 4.3E-27 1.1E-31 217.8 21.8 294 3-326 1-311 (348)
47 COG0644 FixC Dehydrogenases (f 100.0 3.7E-26 9.5E-31 211.0 25.3 310 1-329 1-322 (396)
48 KOG1298 consensus 100.0 1.1E-26 2.8E-31 214.9 18.1 360 3-368 45-424 (509)
49 PRK10157 putative oxidoreducta 99.9 8.8E-25 2.2E-29 200.9 25.2 318 2-327 4-351 (428)
50 TIGR02032 GG-red-SF geranylger 99.9 8E-26 2E-30 208.5 13.8 295 4-308 1-341 (343)
51 PRK10015 hypothetical protein; 99.9 1.3E-23 3.3E-28 192.3 24.9 319 2-327 4-351 (429)
52 TIGR02023 BchP-ChlP geranylger 99.9 2E-25 5.1E-30 205.6 13.5 328 4-351 1-360 (408)
53 TIGR02028 ChlP geranylgeranyl 99.9 5.6E-20 1.4E-24 165.6 16.2 318 6-352 3-354 (401)
54 pfam05834 Lycopene_cycl Lycope 99.8 2.2E-17 5.5E-22 146.6 22.0 277 5-314 1-292 (374)
55 pfam04820 Trp_halogenase Trypt 99.8 2.4E-15 6.1E-20 131.6 25.1 307 6-327 2-369 (457)
56 TIGR01790 carotene-cycl lycope 99.6 5.9E-15 1.5E-19 128.7 12.4 279 5-312 1-318 (419)
57 pfam08491 SE Squalene epoxidas 99.6 8.6E-15 2.2E-19 127.5 9.7 212 151-368 1-227 (276)
58 PRK12409 D-amino acid dehydrog 99.5 1.5E-11 3.9E-16 103.7 17.6 203 104-315 194-408 (410)
59 PRK11728 hypothetical protein; 99.4 1.3E-11 3.4E-16 104.1 13.3 169 1-173 1-216 (400)
60 COG2081 Predicted flavoprotein 99.4 2.2E-12 5.6E-17 109.9 8.6 154 1-165 1-169 (408)
61 PRK11259 solA N-methyltryptoph 99.3 2.3E-11 5.8E-16 102.4 10.4 169 1-173 2-215 (377)
62 COG0579 Predicted dehydrogenas 99.3 5.7E-11 1.5E-15 99.4 12.2 173 1-173 1-222 (429)
63 PRK00711 D-amino acid dehydrog 99.3 9.5E-10 2.4E-14 90.5 18.2 195 108-315 202-404 (416)
64 pfam03486 HI0933_like HI0933-l 99.3 3.4E-11 8.6E-16 101.1 10.4 152 4-164 1-165 (405)
65 pfam01266 DAO FAD dependent ox 99.3 1.9E-10 4.9E-15 95.6 12.6 166 5-171 1-211 (309)
66 PRK01747 mnmC 5-methylaminomet 99.2 1.1E-09 2.7E-14 90.1 15.9 159 4-164 257-459 (660)
67 PRK11883 protoporphyrinogen ox 99.2 6.5E-09 1.7E-13 84.3 18.8 59 5-63 2-78 (452)
68 PRK13369 glycerol-3-phosphate 99.2 5.1E-09 1.3E-13 85.1 16.2 246 3-252 6-311 (503)
69 PRK05249 soluble pyridine nucl 99.2 1.4E-09 3.7E-14 89.2 13.0 57 111-167 221-277 (465)
70 TIGR03140 AhpF alkyl hydropero 99.1 9.7E-10 2.5E-14 90.4 10.3 123 1-175 210-332 (515)
71 PRK12266 glpD glycerol-3-phosp 99.1 9.2E-09 2.4E-13 83.2 14.6 247 1-251 4-310 (503)
72 PRK10262 thioredoxin reductase 99.1 1.2E-09 3.1E-14 89.7 9.6 123 1-175 4-126 (321)
73 TIGR03143 AhpF_homolog putativ 99.1 1.5E-09 3.8E-14 89.0 9.9 37 1-37 1-38 (555)
74 TIGR02352 thiamin_ThiO glycine 99.1 2.5E-09 6.3E-14 87.4 11.0 214 6-223 1-268 (357)
75 TIGR01789 lycopene_cycl lycope 99.0 1.6E-08 4.2E-13 81.4 14.2 285 5-327 1-321 (392)
76 COG0665 DadA Glycine/D-amino a 99.0 1.1E-07 2.9E-12 75.3 17.6 303 1-315 2-369 (387)
77 PRK06292 dihydrolipoamide dehy 99.0 1E-09 2.6E-14 90.3 6.7 36 1-36 1-36 (460)
78 TIGR03467 HpnE squalene-associ 99.0 3.7E-08 9.6E-13 78.8 14.3 56 6-61 1-74 (430)
79 KOG2415 consensus 99.0 1.8E-08 4.6E-13 81.1 12.4 160 3-169 76-262 (621)
80 COG0492 TrxB Thioredoxin reduc 99.0 6.6E-09 1.7E-13 84.3 10.0 116 1-165 1-117 (305)
81 pfam01946 Thi4 Thi4 family. Th 99.0 8E-09 2E-13 83.7 10.3 131 4-167 18-168 (229)
82 PRK08010 pyridine nucleotide-d 99.0 8.1E-09 2.1E-13 83.6 9.8 37 1-37 1-37 (441)
83 PRK12416 protoporphyrinogen ox 99.0 3.4E-07 8.6E-12 71.7 18.1 63 1-65 1-85 (466)
84 TIGR03329 Phn_aa_oxid putative 99.0 6.7E-08 1.7E-12 76.9 14.5 159 3-163 24-237 (460)
85 PRK07251 pyridine nucleotide-d 98.9 2.7E-08 7E-13 79.8 11.5 37 1-37 1-37 (438)
86 PRK07233 hypothetical protein; 98.9 7.4E-09 1.9E-13 83.9 8.6 163 6-169 2-258 (430)
87 TIGR01292 TRX_reduct thioredox 98.9 1.4E-08 3.5E-13 82.0 9.6 138 4-191 1-144 (321)
88 COG1635 THI4 Ribulose 1,5-bisp 98.9 2.7E-08 6.8E-13 79.9 10.0 132 4-168 31-183 (262)
89 PRK06327 dihydrolipoamide dehy 98.9 2.4E-08 6E-13 80.2 9.5 37 1-37 1-38 (475)
90 PRK04176 ribulose-1,5-biphosph 98.9 2.1E-08 5.5E-13 80.5 9.2 132 4-169 26-179 (257)
91 PRK06116 glutathione reductase 98.9 9.2E-08 2.3E-12 75.9 12.3 35 2-36 3-37 (450)
92 COG2072 TrkA Predicted flavopr 98.8 4E-08 1E-12 78.6 10.3 133 1-164 6-145 (443)
93 pfam07992 Pyr_redox_2 Pyridine 98.8 4.7E-08 1.2E-12 78.1 10.1 108 5-164 1-108 (277)
94 PRK06115 dihydrolipoamide dehy 98.8 3.8E-08 9.7E-13 78.7 9.6 36 1-36 1-36 (466)
95 pfam00743 FMO-like Flavin-bind 98.8 7.5E-08 1.9E-12 76.6 11.0 135 6-165 4-152 (532)
96 PRK05192 tRNA uridine 5-carbox 98.8 2.6E-08 6.6E-13 79.9 8.3 145 1-161 4-157 (621)
97 COG0578 GlpA Glycerol-3-phosph 98.8 7.3E-08 1.9E-12 76.6 10.1 172 1-172 10-235 (532)
98 PRK07818 dihydrolipoamide dehy 98.8 5.5E-08 1.4E-12 77.5 9.1 36 1-36 2-37 (467)
99 COG3380 Predicted NAD/FAD-depe 98.8 2.5E-07 6.4E-12 72.7 12.4 259 5-287 3-310 (331)
100 TIGR03364 HpnW_proposed FAD de 98.8 4.3E-08 1.1E-12 78.4 8.3 156 4-164 1-198 (365)
101 KOG2820 consensus 98.8 3.5E-07 8.8E-12 71.7 12.9 170 2-173 6-224 (399)
102 PRK05976 dihydrolipoamide dehy 98.8 5.1E-08 1.3E-12 77.8 8.6 37 1-37 2-38 (464)
103 PRK08958 sdhA succinate dehydr 98.7 1.1E-07 2.7E-12 75.4 9.8 37 1-37 5-41 (588)
104 PRK11101 glpA sn-glycerol-3-ph 98.7 6.3E-08 1.6E-12 77.1 8.3 171 3-173 5-221 (545)
105 PRK06370 mercuric reductase; V 98.7 1.2E-07 3.1E-12 75.1 9.5 35 2-36 3-37 (459)
106 PRK06467 dihydrolipoamide dehy 98.7 3.7E-08 9.4E-13 78.8 6.8 37 1-37 1-38 (472)
107 pfam01134 GIDA Glucose inhibit 98.7 3.8E-08 9.6E-13 78.7 6.7 140 5-162 1-151 (391)
108 TIGR00292 TIGR00292 thiazole b 98.7 2.5E-08 6.3E-13 80.1 5.7 101 4-138 22-134 (283)
109 TIGR02733 desat_CrtD C-3',4' d 98.7 3.3E-08 8.3E-13 79.2 5.9 56 4-59 2-75 (499)
110 PTZ00139 succinate dehydrogena 98.7 3.4E-07 8.5E-12 71.8 11.0 37 2-38 33-69 (622)
111 PRK08641 sdhA succinate dehydr 98.7 3.3E-07 8.5E-12 71.8 11.0 38 1-38 1-38 (589)
112 pfam01593 Amino_oxidase Flavin 98.7 5.8E-06 1.5E-10 62.7 17.1 48 118-165 215-262 (444)
113 KOG1399 consensus 98.7 9E-08 2.3E-12 76.0 7.8 140 3-162 6-152 (448)
114 PRK07057 sdhA succinate dehydr 98.7 5E-07 1.3E-11 70.5 11.6 37 2-38 11-47 (591)
115 PRK06481 fumarate reductase fl 98.7 3.1E-07 7.8E-12 72.1 10.2 149 3-163 60-250 (506)
116 PRK09078 sdhA succinate dehydr 98.7 6.7E-07 1.7E-11 69.6 11.5 155 3-165 12-214 (598)
117 PRK05945 sdhA succinate dehydr 98.6 5.3E-07 1.3E-11 70.3 10.8 147 1-165 1-199 (575)
118 PRK06452 sdhA succinate dehydr 98.6 6.6E-07 1.7E-11 69.6 10.9 157 1-166 1-201 (566)
119 TIGR01350 lipoamide_DH dihydro 98.6 3.7E-07 9.4E-12 71.5 9.7 58 3-64 1-61 (481)
120 COG1249 Lpd Pyruvate/2-oxoglut 98.6 4.6E-07 1.2E-11 70.8 10.1 148 1-172 2-156 (454)
121 PRK06175 L-aspartate oxidase; 98.6 7.9E-07 2E-11 69.0 11.3 152 1-165 1-191 (433)
122 TIGR01377 soxA_mon sarcosine o 98.6 1.4E-06 3.4E-11 67.3 12.3 313 4-328 1-394 (401)
123 COG1233 Phytoene dehydrogenase 98.6 6.8E-08 1.7E-12 76.9 5.4 55 107-161 224-279 (487)
124 PRK08274 tricarballylate dehyd 98.6 7.5E-07 1.9E-11 69.2 10.5 152 3-164 4-188 (456)
125 PRK07121 hypothetical protein; 98.6 1.1E-06 2.8E-11 68.0 11.3 36 3-38 20-55 (491)
126 PRK06069 sdhA succinate dehydr 98.6 1.6E-06 4E-11 66.9 11.9 149 1-165 1-203 (582)
127 PRK08626 fumarate reductase fl 98.6 8.7E-07 2.2E-11 68.7 10.6 38 1-38 1-40 (657)
128 PTZ00052 thioredoxin reductase 98.6 5.4E-07 1.4E-11 70.3 9.4 45 3-47 41-90 (541)
129 PRK09231 fumarate reductase fl 98.6 1.7E-06 4.4E-11 66.5 11.7 151 3-165 4-198 (582)
130 PRK07845 flavoprotein disulfid 98.6 5.1E-07 1.3E-11 70.5 9.0 33 4-36 2-34 (467)
131 PRK07573 sdhA succinate dehydr 98.6 8E-07 2E-11 69.0 9.9 36 2-37 32-67 (638)
132 PRK12842 putative succinate de 98.6 9.9E-07 2.5E-11 68.3 10.4 38 1-38 1-40 (567)
133 PRK06416 dihydrolipoamide dehy 98.6 1.9E-07 4.8E-12 73.6 6.6 34 3-36 4-37 (462)
134 PRK07803 sdhA succinate dehydr 98.5 1.7E-06 4.2E-11 66.7 11.0 36 3-38 8-43 (631)
135 pfam00890 FAD_binding_2 FAD bi 98.5 1E-06 2.6E-11 68.3 9.6 34 5-38 1-34 (401)
136 PRK07395 L-aspartate oxidase; 98.5 1.4E-06 3.6E-11 67.2 9.9 152 2-165 9-200 (556)
137 TIGR03452 mycothione_red mycot 98.5 6.6E-07 1.7E-11 69.6 8.2 33 2-36 1-33 (452)
138 PRK09077 L-aspartate oxidase; 98.5 1.6E-06 4.1E-11 66.7 10.1 35 3-38 8-42 (535)
139 PRK13748 putative mercuric red 98.5 2.2E-06 5.5E-11 65.8 10.6 34 3-36 98-131 (561)
140 PRK08275 putative oxidoreducta 98.5 1.8E-06 4.7E-11 66.4 10.0 150 3-165 9-202 (554)
141 TIGR01317 GOGAT_sm_gam glutama 98.5 1.6E-07 4.1E-12 74.1 4.4 33 5-37 153-185 (517)
142 PRK09754 phenylpropionate diox 98.5 1.4E-06 3.7E-11 67.1 9.3 39 1-39 1-41 (400)
143 PRK04965 nitric oxide reductas 98.5 1.8E-06 4.7E-11 66.3 9.3 62 112-173 188-251 (378)
144 PRK12844 3-ketosteroid-delta-1 98.4 4.5E-07 1.2E-11 70.8 5.9 36 3-38 6-41 (552)
145 PRK06263 sdhA succinate dehydr 98.4 5.1E-06 1.3E-10 63.1 11.1 146 3-165 7-199 (539)
146 PRK12845 3-ketosteroid-delta-1 98.4 2.9E-06 7.4E-11 64.9 9.6 36 2-38 15-50 (566)
147 PRK06134 putative FAD-binding 98.4 2.6E-06 6.7E-11 65.2 9.2 36 3-38 10-45 (579)
148 PRK05329 anaerobic glycerol-3- 98.4 4.5E-07 1.1E-11 70.8 5.1 35 1-36 1-35 (425)
149 TIGR01812 sdhA_frdA_Gneg succi 98.4 2.2E-06 5.6E-11 65.8 8.4 152 5-167 1-231 (636)
150 PRK08205 sdhA succinate dehydr 98.4 5.2E-06 1.3E-10 63.0 10.2 36 1-37 1-38 (583)
151 COG0029 NadB Aspartate oxidase 98.4 2E-06 5.1E-11 66.1 7.8 153 5-167 9-200 (518)
152 PRK12843 putative FAD-binding 98.4 9.8E-07 2.5E-11 68.4 6.2 36 3-38 14-49 (576)
153 TIGR01372 soxA sarcosine oxida 98.4 5.4E-07 1.4E-11 70.2 4.9 165 1-165 173-435 (1026)
154 PRK07208 hypothetical protein; 98.3 7.7E-07 2E-11 69.1 5.2 38 1-38 1-38 (474)
155 PRK07846 mycothione/glutathion 98.3 1.2E-06 3.1E-11 67.6 6.2 32 3-36 1-32 (453)
156 PRK08401 L-aspartate oxidase; 98.3 6.7E-06 1.7E-10 62.2 9.7 148 4-166 2-178 (464)
157 TIGR01816 sdhA_forward succina 98.3 6.2E-06 1.6E-10 62.5 9.3 159 2-165 1-209 (615)
158 pfam06039 Mqo Malate:quinone o 98.3 6.4E-06 1.6E-10 62.3 9.4 171 2-172 3-255 (489)
159 PRK11749 putative oxidoreducta 98.3 9.6E-07 2.5E-11 68.4 5.0 34 5-38 142-175 (460)
160 PRK12810 gltD glutamate syntha 98.3 9.8E-07 2.5E-11 68.3 5.0 34 5-38 145-178 (472)
161 COG0445 GidA Flavin-dependent 98.3 1.1E-06 2.8E-11 68.0 5.2 145 1-162 2-157 (621)
162 PRK12831 putative oxidoreducta 98.3 1.1E-06 2.8E-11 68.0 4.8 34 5-38 142-175 (464)
163 PRK12771 putative glutamate sy 98.3 1.1E-06 2.8E-11 67.9 4.9 34 5-38 139-172 (560)
164 PRK12814 putative NADPH-depend 98.3 1.3E-06 3.2E-11 67.5 4.9 35 5-39 195-229 (652)
165 PRK13984 putative oxidoreducta 98.3 1.3E-06 3.4E-11 67.4 4.9 35 5-39 285-319 (604)
166 PRK13339 malate:quinone oxidor 98.3 8.6E-06 2.2E-10 61.4 8.9 171 2-172 5-257 (497)
167 PRK12809 putative oxidoreducta 98.2 1.5E-06 3.8E-11 67.0 4.9 55 5-59 312-375 (639)
168 KOG0029 consensus 98.2 1.5E-06 3.8E-11 67.0 4.8 37 1-37 13-49 (501)
169 TIGR03315 Se_ygfK putative sel 98.2 1.6E-06 4.1E-11 66.8 4.8 35 5-39 539-573 (1012)
170 PRK12837 3-ketosteroid-delta-1 98.2 2E-05 5E-10 58.8 10.2 36 2-38 8-43 (515)
171 TIGR02734 crtI_fam phytoene de 98.2 9.6E-07 2.5E-11 68.4 3.5 33 6-38 1-33 (526)
172 PRK12839 hypothetical protein; 98.2 2E-06 5.2E-11 66.0 5.1 38 1-38 6-44 (574)
173 PRK09853 putative selenate red 98.2 1.9E-06 4.9E-11 66.2 4.9 34 5-38 552-585 (1032)
174 PRK12769 putative oxidoreducta 98.2 2E-06 5E-11 66.1 4.9 34 5-38 329-362 (654)
175 KOG2853 consensus 98.2 9E-05 2.3E-09 53.9 13.3 299 3-313 86-482 (509)
176 PRK12778 putative bifunctional 98.2 2.4E-06 6.1E-11 65.5 5.0 34 5-38 441-474 (760)
177 COG3075 GlpB Anaerobic glycero 98.2 2.4E-06 6.2E-11 65.4 4.8 51 1-57 1-51 (421)
178 TIGR03378 glycerol3P_GlpB glyc 98.2 2.4E-06 6.2E-11 65.5 4.7 49 4-57 1-49 (419)
179 TIGR01813 flavo_cyto_c flavocy 98.2 1.3E-05 3.4E-10 60.1 8.2 165 5-171 1-220 (487)
180 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.7E-06 6.9E-11 65.1 4.7 36 3-38 1-37 (390)
181 PRK07512 L-aspartate oxidase; 98.2 2.9E-05 7.4E-10 57.5 9.8 153 3-166 9-200 (507)
182 TIGR03385 CoA_CoA_reduc CoA-di 98.2 5.6E-05 1.4E-09 55.4 11.2 99 5-167 139-237 (427)
183 TIGR01373 soxB sarcosine oxida 98.1 1.8E-05 4.6E-10 59.1 8.6 182 2-185 29-263 (407)
184 PRK12834 putative FAD-binding 98.1 3.7E-06 9.4E-11 64.1 5.0 36 1-37 1-36 (549)
185 TIGR02485 CobZ_N-term precorri 98.1 1.7E-06 4.3E-11 66.6 3.3 168 4-175 2-205 (467)
186 TIGR02374 nitri_red_nirB nitri 98.1 1.2E-05 3.2E-10 60.2 7.6 122 6-193 150-280 (813)
187 PRK09564 coenzyme A disulfide 98.1 4.1E-05 1.1E-09 56.4 10.2 54 112-166 196-249 (443)
188 PRK12770 putative glutamate sy 98.1 3.7E-06 9.5E-11 64.1 4.8 35 4-38 18-52 (350)
189 PRK05257 malate:quinone oxidor 98.1 4.1E-05 1E-09 56.5 10.0 170 3-172 9-260 (499)
190 PRK07845 flavoprotein disulfid 98.1 3.5E-05 8.9E-10 56.9 9.5 56 112-167 224-279 (467)
191 COG1232 HemY Protoporphyrinoge 98.1 1.1E-05 2.9E-10 60.6 6.9 59 6-64 3-79 (444)
192 PRK06912 acoL dihydrolipoamide 98.1 1.5E-05 3.8E-10 59.7 7.5 33 5-37 2-34 (458)
193 PRK07843 3-ketosteroid-delta-1 98.1 4.8E-06 1.2E-10 63.3 5.0 36 3-38 5-40 (560)
194 PRK06416 dihydrolipoamide dehy 98.1 7.1E-05 1.8E-09 54.7 10.8 57 111-167 217-276 (462)
195 TIGR03197 MnmC_Cterm tRNA U-34 98.1 0.00031 7.8E-09 50.0 14.0 210 104-328 132-378 (381)
196 TIGR01318 gltD_gamma_fam gluta 98.1 3.4E-06 8.5E-11 64.4 3.9 55 5-59 145-208 (480)
197 PRK13512 coenzyme A disulfide 98.1 7.7E-05 2E-09 54.4 10.8 37 1-39 1-39 (438)
198 TIGR01316 gltA glutamate synth 98.1 4.4E-06 1.1E-10 63.5 4.5 36 3-38 142-177 (462)
199 TIGR00551 nadB L-aspartate oxi 98.1 7.5E-05 1.9E-09 54.5 10.8 159 2-168 1-211 (546)
200 PRK05335 tRNA (uracil-5-)-meth 98.1 1.2E-05 3E-10 60.4 6.5 111 1-137 1-130 (434)
201 PRK06115 dihydrolipoamide dehy 98.1 5.4E-05 1.4E-09 55.5 9.7 100 5-167 176-280 (466)
202 PRK09897 hypothetical protein; 98.1 1.1E-05 2.8E-10 60.6 6.1 144 1-162 1-165 (535)
203 PRK02106 choline dehydrogenase 98.0 6.2E-06 1.6E-10 62.5 4.7 34 3-36 5-39 (555)
204 PRK07846 mycothione/glutathion 98.0 7.7E-05 2E-09 54.4 10.1 99 5-167 170-268 (453)
205 KOG1335 consensus 98.0 3.1E-05 7.8E-10 57.4 7.8 37 2-38 38-74 (506)
206 PTZ00052 thioredoxin reductase 98.0 0.00019 4.9E-09 51.5 11.9 99 5-167 224-322 (541)
207 PRK05976 dihydrolipoamide dehy 98.0 0.00011 2.9E-09 53.2 10.7 100 5-167 177-278 (464)
208 KOG2665 consensus 98.0 4.5E-05 1.1E-09 56.1 8.4 167 3-171 48-266 (453)
209 PTZ00306 NADH-dependent fumara 98.0 2.5E-05 6.4E-10 58.0 6.9 35 5-39 411-445 (1167)
210 PRK12835 3-ketosteroid-delta-1 98.0 1.1E-05 2.8E-10 60.6 5.0 36 3-38 11-46 (584)
211 PRK13800 putative oxidoreducta 98.0 5.7E-05 1.5E-09 55.4 8.5 37 3-39 13-49 (894)
212 TIGR03452 mycothione_red mycot 98.0 8.7E-05 2.2E-09 54.1 9.4 99 5-167 171-269 (452)
213 COG1249 Lpd Pyruvate/2-oxoglut 98.0 0.00021 5.4E-09 51.2 11.3 117 6-186 176-295 (454)
214 PRK12775 putative trifunctiona 98.0 1.2E-05 3.2E-10 60.2 4.7 55 5-59 434-497 (993)
215 PRK12779 putative bifunctional 97.9 1.4E-05 3.6E-10 59.9 4.8 55 5-59 308-371 (944)
216 TIGR03169 Nterm_to_SelD pyridi 97.9 0.00015 3.8E-09 52.3 9.7 109 5-168 1-112 (364)
217 PTZ00153 lipoamide dehydrogena 97.9 9.7E-05 2.5E-09 53.7 8.6 63 2-66 122-187 (673)
218 PRK07804 L-aspartate oxidase; 97.9 1.9E-05 4.8E-10 58.9 4.9 36 3-38 15-50 (533)
219 PRK13748 putative mercuric red 97.9 0.00026 6.5E-09 50.6 10.6 41 126-167 329-369 (561)
220 COG3349 Uncharacterized conser 97.9 2.2E-05 5.5E-10 58.5 4.7 57 6-62 3-76 (485)
221 COG1231 Monoamine oxidase [Ami 97.9 2.4E-05 6E-10 58.2 4.8 37 1-37 5-41 (450)
222 PRK06912 acoL dihydrolipoamide 97.9 0.00045 1.1E-08 48.8 11.3 100 5-167 172-272 (458)
223 COG0562 Glf UDP-galactopyranos 97.8 2.6E-05 6.7E-10 57.9 4.8 37 3-39 1-37 (374)
224 PRK08010 pyridine nucleotide-d 97.8 0.00024 6.2E-09 50.7 9.7 99 5-167 160-258 (441)
225 COG1053 SdhA Succinate dehydro 97.8 3.6E-05 9.2E-10 56.8 4.9 38 2-39 5-42 (562)
226 PRK06854 adenylylsulfate reduc 97.8 4.9E-05 1.3E-09 55.8 5.4 37 3-39 11-49 (610)
227 PRK06292 dihydrolipoamide dehy 97.8 0.00034 8.6E-09 49.7 9.6 99 5-167 171-272 (460)
228 PRK06327 dihydrolipoamide dehy 97.8 0.00048 1.2E-08 48.6 10.3 57 111-167 228-288 (475)
229 PRK09564 coenzyme A disulfide 97.8 0.00021 5.3E-09 51.3 8.4 117 1-170 1-122 (443)
230 PRK08071 L-aspartate oxidase; 97.8 3.4E-05 8.7E-10 57.0 4.4 37 1-38 1-37 (510)
231 KOG1276 consensus 97.7 1E-04 2.5E-09 53.6 6.1 86 4-89 12-121 (491)
232 PRK06370 mercuric reductase; V 97.7 0.00052 1.3E-08 48.3 9.8 100 5-167 172-274 (459)
233 COG1148 HdrA Heterodisulfide r 97.7 6E-05 1.5E-09 55.2 4.8 35 5-39 126-160 (622)
234 TIGR01350 lipoamide_DH dihydro 97.7 0.00033 8.4E-09 49.8 8.6 100 5-167 180-287 (481)
235 COG2509 Uncharacterized FAD-de 97.7 0.00039 1E-08 49.2 8.9 69 107-175 173-247 (486)
236 pfam00070 Pyr_redox Pyridine n 97.7 0.00023 5.9E-09 50.9 7.7 80 6-148 2-81 (82)
237 COG2303 BetA Choline dehydroge 97.7 5.3E-05 1.4E-09 55.6 4.2 35 2-36 6-40 (542)
238 PRK07251 pyridine nucleotide-d 97.6 0.0007 1.8E-08 47.4 9.7 99 5-167 159-257 (438)
239 COG3634 AhpF Alkyl hydroperoxi 97.6 5.8E-05 1.5E-09 55.3 3.8 129 3-185 211-343 (520)
240 COG4529 Uncharacterized protei 97.6 9.5E-05 2.4E-09 53.7 4.8 149 4-161 2-162 (474)
241 TIGR01320 mal_quin_oxido malat 97.6 0.00044 1.1E-08 48.8 7.6 313 4-322 1-459 (487)
242 PRK04965 nitric oxide reductas 97.5 0.0012 3.1E-08 45.7 9.7 113 1-167 1-115 (378)
243 PRK07818 dihydrolipoamide dehy 97.5 0.0012 3.1E-08 45.7 9.5 99 6-167 175-278 (467)
244 TIGR00137 gid gid protein; Int 97.5 0.00031 7.9E-09 50.0 6.5 119 5-143 2-131 (444)
245 TIGR01438 TGR thioredoxin and 97.5 0.00031 8E-09 50.0 5.7 36 2-37 1-36 (513)
246 TIGR02730 carot_isom carotene 97.4 0.00013 3.3E-09 52.8 3.6 187 107-299 229-490 (506)
247 KOG3923 consensus 97.4 0.0021 5.4E-08 43.8 9.6 157 1-172 1-202 (342)
248 COG3573 Predicted oxidoreducta 97.4 0.00026 6.5E-09 50.6 4.9 38 1-38 3-40 (552)
249 COG0446 HcaD Uncharacterized N 97.4 0.0018 4.5E-08 44.5 9.0 31 6-36 1-33 (415)
250 KOG2311 consensus 97.4 0.00036 9.1E-09 49.5 5.2 151 3-172 28-193 (679)
251 COG0493 GltD NADPH-dependent g 97.3 0.00021 5.4E-09 51.2 3.7 55 5-59 125-188 (457)
252 KOG2852 consensus 97.3 0.00088 2.3E-08 46.6 6.7 153 4-163 11-208 (380)
253 COG1252 Ndh NADH dehydrogenase 97.3 0.0037 9.5E-08 42.1 9.4 38 1-38 1-40 (405)
254 PRK06467 dihydrolipoamide dehy 97.2 0.0034 8.7E-08 42.3 9.0 33 5-37 176-208 (472)
255 TIGR01421 gluta_reduc_1 glutat 97.2 0.00073 1.9E-08 47.3 5.6 155 2-172 1-163 (475)
256 TIGR02053 MerA mercuric reduct 97.2 0.00061 1.6E-08 47.8 5.1 73 113-186 228-308 (494)
257 KOG2844 consensus 97.2 0.00055 1.4E-08 48.2 4.5 173 4-177 40-258 (856)
258 PRK13512 coenzyme A disulfide 97.2 0.00095 2.4E-08 46.4 5.4 95 5-166 150-244 (438)
259 COG2907 Predicted NAD/FAD-bind 97.1 0.0011 2.8E-08 46.0 5.0 58 4-62 9-87 (447)
260 KOG0042 consensus 97.1 0.00023 6E-09 50.9 1.5 54 3-56 67-122 (680)
261 KOG1800 consensus 97.0 0.0011 2.9E-08 45.8 4.6 36 5-40 22-59 (468)
262 KOG1238 consensus 97.0 0.00095 2.4E-08 46.4 3.9 37 2-38 56-93 (623)
263 KOG0399 consensus 96.9 0.0011 2.8E-08 46.0 4.0 35 4-38 1786-1820(2142)
264 TIGR01176 fum_red_Fp fumarate 96.9 0.015 3.9E-07 37.6 9.9 154 3-168 3-200 (585)
265 KOG0685 consensus 96.9 0.0018 4.6E-08 44.4 4.6 33 5-37 23-56 (498)
266 PRK09496 trkA potassium transp 96.8 0.0024 6.2E-08 43.4 5.2 57 1-60 1-64 (455)
267 PTZ00188 adrenodoxin reductase 96.8 0.0021 5.3E-08 43.9 4.7 36 4-39 40-76 (506)
268 COG3486 IucD Lysine/ornithine 96.8 0.0023 5.9E-08 43.6 4.8 151 1-166 3-160 (436)
269 PTZ00153 lipoamide dehydrogena 96.7 0.017 4.2E-07 37.3 8.7 22 146-167 418-439 (673)
270 pfam00996 GDI GDP dissociation 96.7 0.0035 9E-08 42.2 5.2 39 1-39 1-40 (439)
271 COG0569 TrkA K+ transport syst 96.6 0.0049 1.2E-07 41.2 5.4 56 6-61 3-66 (225)
272 KOG3851 consensus 96.6 0.0055 1.4E-07 40.8 5.6 109 2-168 38-150 (446)
273 KOG2404 consensus 96.6 0.0098 2.5E-07 39.0 6.7 155 5-165 11-208 (477)
274 TIGR02732 zeta_caro_desat caro 96.6 0.0036 9.2E-08 42.1 4.4 60 6-65 2-78 (474)
275 COG1206 Gid NAD(FAD)-utilizing 96.5 0.0019 4.8E-08 44.2 2.9 122 1-142 1-133 (439)
276 KOG0404 consensus 96.5 0.017 4.4E-07 37.1 7.6 135 4-185 9-144 (322)
277 COG1251 NirB NAD(P)H-nitrite r 96.5 0.013 3.2E-07 38.2 6.8 62 113-174 193-256 (793)
278 KOG4254 consensus 96.4 0.0024 6.2E-08 43.4 2.9 34 3-36 14-47 (561)
279 pfam03721 UDPG_MGDP_dh_N UDP-g 96.4 0.0057 1.4E-07 40.7 4.6 33 1-36 1-33 (185)
280 PRK09754 phenylpropionate diox 96.4 0.0067 1.7E-07 40.2 4.9 105 5-172 146-252 (400)
281 TIGR03169 Nterm_to_SelD pyridi 96.3 0.057 1.4E-06 33.4 9.5 36 274-312 270-308 (364)
282 TIGR02731 phytoene_desat phyto 96.3 0.013 3.4E-07 37.9 6.0 62 6-67 2-80 (454)
283 TIGR02061 aprA adenylylsulfate 96.3 0.0044 1.1E-07 41.5 3.5 36 5-40 1-40 (651)
284 PRK06129 3-hydroxyacyl-CoA deh 96.3 0.0085 2.2E-07 39.4 4.9 36 1-38 2-37 (308)
285 PRK01438 murD UDP-N-acetylmura 96.2 0.018 4.6E-07 37.0 6.5 32 5-36 16-47 (481)
286 KOG1336 consensus 96.2 0.04 1E-06 34.5 8.1 33 4-36 75-109 (478)
287 PRK06116 glutathione reductase 96.2 0.013 3.3E-07 38.1 5.5 100 5-167 169-269 (450)
288 PRK05808 3-hydroxybutyryl-CoA 96.2 0.0098 2.5E-07 39.0 4.8 33 5-37 5-37 (282)
289 PRK06522 2-dehydropantoate 2-r 96.2 0.0083 2.1E-07 39.5 4.4 34 1-37 1-34 (307)
290 PRK02006 murD UDP-N-acetylmura 96.1 0.014 3.5E-07 37.9 5.3 32 5-36 9-40 (501)
291 COG1252 Ndh NADH dehydrogenase 96.1 0.0065 1.7E-07 40.3 3.6 62 104-167 54-115 (405)
292 PRK08293 3-hydroxybutyryl-CoA 96.1 0.012 3.1E-07 38.3 4.9 33 5-37 5-37 (288)
293 PRK07531 bifunctional 3-hydrox 96.0 0.013 3.3E-07 38.1 4.9 32 6-37 5-36 (489)
294 PTZ00318 NADH dehydrogenase; P 96.0 0.0093 2.4E-07 39.1 4.2 37 1-37 8-44 (514)
295 PRK05249 soluble pyridine nucl 96.0 0.0095 2.4E-07 39.1 4.1 144 1-165 4-152 (465)
296 pfam02737 3HCDH_N 3-hydroxyacy 96.0 0.013 3.4E-07 38.0 4.7 32 6-37 2-33 (180)
297 TIGR03026 NDP-sugDHase nucleot 95.9 0.012 3.2E-07 38.2 4.5 34 1-37 1-34 (411)
298 PRK06130 3-hydroxybutyryl-CoA 95.9 0.014 3.6E-07 37.8 4.8 33 5-37 7-39 (310)
299 PRK08229 2-dehydropantoate 2-r 95.9 0.014 3.5E-07 37.9 4.5 31 6-36 5-35 (341)
300 PRK09260 3-hydroxybutyryl-CoA 95.8 0.016 4.1E-07 37.4 4.7 35 1-37 2-36 (289)
301 PRK01710 murD UDP-N-acetylmura 95.8 0.022 5.5E-07 36.5 5.4 33 5-37 16-48 (458)
302 PRK00683 murD UDP-N-acetylmura 95.8 0.016 4E-07 37.5 4.6 34 1-36 3-36 (418)
303 PRK09117 consensus 95.8 0.018 4.6E-07 37.1 4.8 35 1-37 2-36 (282)
304 TIGR01811 sdhA_Bsu succinate d 95.7 0.0093 2.4E-07 39.1 3.2 30 6-35 1-30 (620)
305 PRK07530 3-hydroxybutyryl-CoA 95.7 0.021 5.4E-07 36.5 4.9 33 5-37 6-38 (292)
306 PRK07819 3-hydroxybutyryl-CoA 95.7 0.022 5.6E-07 36.4 4.9 32 6-37 5-36 (284)
307 PRK05708 2-dehydropantoate 2-r 95.6 0.018 4.6E-07 37.0 4.2 33 1-36 3-35 (305)
308 PRK11064 wecC UDP-N-acetyl-D-m 95.5 0.025 6.5E-07 35.9 4.8 32 5-36 5-36 (415)
309 KOG2960 consensus 95.5 0.0029 7.5E-08 42.8 -0.1 34 5-38 78-113 (328)
310 TIGR03377 glycerol3P_GlpA glyc 95.5 0.14 3.6E-06 30.5 8.4 67 109-175 130-203 (516)
311 PRK12921 2-dehydropantoate 2-r 95.4 0.025 6.3E-07 36.0 4.4 33 1-36 1-33 (306)
312 PRK00141 murD UDP-N-acetylmura 95.3 0.035 8.8E-07 34.9 4.7 33 5-37 19-51 (476)
313 PRK06035 3-hydroxyacyl-CoA deh 95.3 0.038 9.6E-07 34.7 4.9 37 1-37 1-37 (291)
314 PRK07066 3-hydroxybutyryl-CoA 95.2 0.04 1E-06 34.4 5.0 54 5-59 9-62 (321)
315 COG1004 Ugd Predicted UDP-gluc 95.2 0.034 8.7E-07 35.0 4.6 33 1-36 1-33 (414)
316 PRK02472 murD UDP-N-acetylmura 95.2 0.047 1.2E-06 34.0 5.2 33 5-37 11-43 (450)
317 COG5044 MRS6 RAB proteins gera 95.2 0.04 1E-06 34.5 4.9 38 3-40 6-43 (434)
318 pfam01210 NAD_Gly3P_dh_N NAD-d 95.2 0.041 1E-06 34.4 4.9 32 6-37 3-34 (159)
319 PRK07417 arogenate dehydrogena 95.2 0.034 8.6E-07 35.0 4.4 33 1-36 2-34 (280)
320 PRK07660 consensus 95.1 0.044 1.1E-06 34.2 5.0 37 1-37 1-37 (283)
321 pfam07992 Pyr_redox_2 Pyridine 95.1 0.045 1.1E-06 34.1 4.8 13 274-286 262-274 (277)
322 pfam02254 TrkA_N TrkA-N domain 95.0 0.046 1.2E-06 34.0 4.8 53 6-59 1-59 (115)
323 KOG1346 consensus 95.0 0.11 2.8E-06 31.2 6.6 134 2-164 177-312 (659)
324 pfam02558 ApbA Ketopantoate re 94.9 0.041 1E-06 34.4 4.3 31 6-36 1-31 (150)
325 TIGR02053 MerA mercuric reduct 94.9 0.046 1.2E-06 34.0 4.5 52 4-59 1-58 (494)
326 TIGR01424 gluta_reduc_2 glutat 94.8 0.033 8.4E-07 35.1 3.6 145 3-169 2-166 (478)
327 PRK03369 murD UDP-N-acetylmura 94.8 0.05 1.3E-06 33.8 4.5 32 5-36 14-45 (487)
328 PRK06249 2-dehydropantoate 2-r 94.7 0.064 1.6E-06 33.0 4.9 33 4-36 6-38 (313)
329 PRK03806 murD UDP-N-acetylmura 94.7 0.061 1.6E-06 33.1 4.8 32 5-36 8-39 (438)
330 KOG4716 consensus 94.6 0.041 1E-06 34.4 3.6 34 2-35 18-51 (503)
331 PRK03803 murD UDP-N-acetylmura 94.6 0.059 1.5E-06 33.2 4.4 32 5-36 9-40 (448)
332 PRK02705 murD UDP-N-acetylmura 94.5 0.15 3.8E-06 30.3 6.3 32 6-37 3-34 (459)
333 PRK08268 3-hydroxybutyryl-CoA 94.4 0.076 1.9E-06 32.4 4.6 32 6-37 6-37 (503)
334 PRK00094 gpsA NAD(P)H-dependen 94.3 0.092 2.3E-06 31.8 4.9 34 1-36 1-34 (325)
335 KOG0405 consensus 94.3 0.28 7.3E-06 28.2 7.3 140 2-167 19-169 (478)
336 TIGR03143 AhpF_homolog putativ 94.3 0.09 2.3E-06 31.9 4.7 33 5-37 145-177 (555)
337 PRK01390 murD UDP-N-acetylmura 94.2 0.091 2.3E-06 31.9 4.7 32 5-36 11-42 (457)
338 PRK13977 myosin-cross-reactive 94.1 0.11 2.9E-06 31.2 5.1 34 4-37 23-60 (577)
339 PRK04308 murD UDP-N-acetylmura 94.1 0.094 2.4E-06 31.7 4.6 32 5-36 7-38 (445)
340 PRK06567 putative bifunctional 94.1 0.046 1.2E-06 34.0 3.0 32 3-34 401-432 (1048)
341 TIGR01424 gluta_reduc_2 glutat 94.1 0.49 1.2E-05 26.5 10.2 71 108-179 227-300 (478)
342 KOG4405 consensus 94.1 0.063 1.6E-06 33.0 3.7 41 3-43 8-48 (547)
343 COG0771 MurD UDP-N-acetylmuram 94.1 0.09 2.3E-06 31.9 4.4 34 5-38 9-42 (448)
344 TIGR00692 tdh L-threonine 3-de 94.0 0.079 2E-06 32.3 4.1 35 5-39 164-199 (341)
345 PRK04663 murD UDP-N-acetylmura 94.0 0.1 2.7E-06 31.4 4.7 34 1-36 7-42 (438)
346 PRK07502 cyclohexadienyl dehyd 93.8 0.27 7E-06 28.4 6.4 46 5-62 8-55 (307)
347 cd05292 LDH_2 A subgroup of L- 93.7 0.14 3.5E-06 30.6 4.8 35 1-38 1-37 (308)
348 pfam01262 AlaDh_PNT_C Alanine 93.7 0.13 3.4E-06 30.6 4.8 33 5-37 22-54 (150)
349 PRK03815 murD UDP-N-acetylmura 93.7 0.12 2.9E-06 31.1 4.4 31 1-35 1-31 (401)
350 KOG2018 consensus 93.6 0.13 3.3E-06 30.8 4.6 53 2-59 74-127 (430)
351 COG1893 ApbA Ketopantoate redu 93.6 0.1 2.6E-06 31.5 4.0 33 1-36 1-33 (307)
352 COG1748 LYS9 Saccharopine dehy 93.6 0.14 3.7E-06 30.4 4.8 34 1-36 1-35 (389)
353 PRK06223 malate dehydrogenase; 93.6 0.15 3.8E-06 30.3 4.8 34 1-37 1-36 (312)
354 cd01337 MDH_glyoxysomal_mitoch 93.5 0.14 3.5E-06 30.6 4.5 33 1-36 1-36 (310)
355 TIGR03140 AhpF alkyl hydropero 93.5 0.15 3.8E-06 30.3 4.7 15 295-309 360-374 (515)
356 PTZ00117 malate dehydrogenase; 93.5 0.19 4.9E-06 29.5 5.2 36 1-38 1-37 (313)
357 TIGR00745 apbA_panE 2-dehydrop 93.4 0.13 3.2E-06 30.8 4.3 30 6-35 2-33 (332)
358 PTZ00318 NADH dehydrogenase; P 93.3 0.096 2.5E-06 31.7 3.5 43 124-166 81-134 (514)
359 cd05293 LDH_1 A subgroup of L- 93.2 0.2 5.2E-06 29.3 5.0 33 5-37 5-39 (312)
360 KOG1439 consensus 93.2 0.044 1.1E-06 34.2 1.6 39 2-40 3-41 (440)
361 pfam00056 Ldh_1_N lactate/mala 93.1 0.17 4.3E-06 29.9 4.5 34 1-37 1-37 (142)
362 TIGR01763 MalateDH_bact malate 93.0 0.088 2.2E-06 32.0 3.0 29 6-34 4-34 (308)
363 pfam06100 Strep_67kDa_ant Stre 93.0 0.22 5.6E-06 29.1 4.9 33 5-37 4-40 (500)
364 cd05294 LDH-like_MDH_nadp A la 93.0 0.26 6.8E-06 28.4 5.3 34 1-37 1-37 (309)
365 COG1063 Tdh Threonine dehydrog 92.8 0.2 5.1E-06 29.3 4.5 13 275-287 262-274 (350)
366 PRK05675 sdhA succinate dehydr 92.7 0.79 2E-05 25.0 7.6 58 108-165 127-191 (570)
367 PRK08507 prephenate dehydrogen 92.7 0.2 5.2E-06 29.3 4.4 46 1-61 1-48 (275)
368 TIGR00136 gidA glucose-inhibit 92.7 0.13 3.2E-06 30.8 3.4 32 4-35 1-32 (630)
369 pfam03446 NAD_binding_2 NAD bi 92.5 0.25 6.3E-06 28.7 4.7 35 1-37 1-35 (163)
370 PRK01368 murD UDP-N-acetylmura 92.4 0.24 6.2E-06 28.7 4.5 33 1-33 1-36 (450)
371 PTZ00325 malate dehydrogenase; 92.4 0.28 7.3E-06 28.2 4.9 33 1-35 1-36 (313)
372 pfam00743 FMO-like Flavin-bind 92.3 0.27 6.9E-06 28.4 4.7 33 5-37 185-217 (532)
373 PRK05562 precorrin-2 dehydroge 92.1 0.34 8.7E-06 27.6 5.0 34 2-35 23-56 (222)
374 PRK00421 murC UDP-N-acetylmura 92.1 0.54 1.4E-05 26.2 6.0 46 1-59 8-54 (459)
375 PRK11730 fadB multifunctional 91.8 0.27 6.9E-06 28.4 4.2 33 5-37 315-347 (715)
376 KOG2755 consensus 91.6 0.17 4.2E-06 29.9 2.9 34 6-39 2-37 (334)
377 PRK10262 thioredoxin reductase 91.6 0.38 9.6E-06 27.3 4.7 27 274-300 278-308 (321)
378 PRK10669 putative cation:proto 91.6 0.33 8.3E-06 27.8 4.4 12 275-286 459-470 (558)
379 PRK10309 galactitol-1-phosphat 91.5 0.33 8.3E-06 27.8 4.3 10 275-284 253-262 (347)
380 TIGR01810 betA choline dehydro 91.5 0.12 3.1E-06 30.9 2.1 30 5-34 1-31 (540)
381 PRK09288 purT phosphoribosylgl 91.4 0.57 1.4E-05 26.0 5.4 32 6-37 15-46 (395)
382 PRK12475 thiamine/molybdopteri 91.3 0.43 1.1E-05 26.9 4.8 33 4-36 25-58 (337)
383 PTZ00142 6-phosphogluconate de 91.2 0.37 9.4E-06 27.4 4.3 36 2-37 4-39 (474)
384 COG0492 TrxB Thioredoxin reduc 91.1 0.58 1.5E-05 26.0 5.2 16 274-289 264-279 (305)
385 PRK09424 pntA NAD(P) transhydr 91.0 0.39 1E-05 27.2 4.3 33 5-37 167-199 (510)
386 PRK07688 thiamine/molybdopteri 91.0 0.46 1.2E-05 26.7 4.7 33 4-36 25-58 (339)
387 COG0240 GpsA Glycerol-3-phosph 90.9 0.43 1.1E-05 26.9 4.5 32 6-37 4-35 (329)
388 pfam00899 ThiF ThiF family. Th 90.9 0.5 1.3E-05 26.4 4.8 33 5-37 3-36 (134)
389 COG0287 TyrA Prephenate dehydr 90.8 0.47 1.2E-05 26.6 4.6 33 5-37 5-37 (279)
390 cd01487 E1_ThiF_like E1_ThiF_l 90.8 0.54 1.4E-05 26.2 4.9 32 6-37 2-34 (174)
391 PRK05086 malate dehydrogenase; 90.7 0.42 1.1E-05 27.0 4.2 33 1-36 1-37 (312)
392 cd01339 LDH-like_MDH L-lactate 90.5 0.46 1.2E-05 26.7 4.3 32 6-37 1-33 (300)
393 PTZ00082 L-lactate dehydrogena 90.3 0.64 1.6E-05 25.7 4.9 37 1-37 5-42 (322)
394 KOG2304 consensus 90.3 0.31 7.9E-06 27.9 3.3 32 5-36 13-44 (298)
395 PRK00066 ldh L-lactate dehydro 90.3 0.71 1.8E-05 25.3 5.1 35 3-37 6-42 (315)
396 PRK10675 UDP-galactose-4-epime 90.3 0.65 1.6E-05 25.6 4.9 32 1-35 1-33 (338)
397 PRK06545 prephenate dehydrogen 90.2 0.45 1.1E-05 26.8 4.0 47 5-61 2-48 (357)
398 TIGR02279 PaaC-3OHAcCoADH 3-hy 90.2 0.36 9.3E-06 27.4 3.6 35 3-37 5-39 (508)
399 PRK05690 molybdopterin biosynt 90.1 0.69 1.8E-05 25.4 4.9 35 3-37 32-67 (245)
400 TIGR02356 adenyl_thiF thiazole 89.9 0.49 1.2E-05 26.5 4.0 33 5-37 23-56 (210)
401 COG1179 Dinucleotide-utilizing 89.9 0.77 2E-05 25.1 5.0 52 3-58 30-82 (263)
402 PRK08306 dipicolinate synthase 89.6 0.72 1.8E-05 25.3 4.7 30 4-33 3-32 (296)
403 COG1250 FadB 3-hydroxyacyl-CoA 89.6 0.58 1.5E-05 26.0 4.2 33 5-37 5-37 (307)
404 PRK07232 malic enzyme; Reviewe 89.4 0.8 2E-05 24.9 4.8 41 3-43 186-229 (753)
405 COG2085 Predicted dinucleotide 89.3 0.81 2.1E-05 24.9 4.8 35 1-37 1-35 (211)
406 cd05290 LDH_3 A subgroup of L- 89.3 0.91 2.3E-05 24.5 5.0 33 6-38 2-36 (307)
407 PRK08644 thiamine biosynthesis 89.2 0.65 1.7E-05 25.6 4.2 35 3-37 27-62 (209)
408 PRK10083 putative dehydrogenas 89.1 0.6 1.5E-05 25.9 4.0 10 275-284 252-261 (339)
409 TIGR01087 murD UDP-N-acetylmur 89.1 0.53 1.4E-05 26.2 3.7 32 6-37 2-35 (476)
410 PRK07102 short chain dehydroge 89.1 0.95 2.4E-05 24.4 5.0 34 1-36 1-35 (243)
411 cd00755 YgdL_like Family of ac 89.1 0.69 1.8E-05 25.4 4.3 36 2-37 10-46 (231)
412 PRK12862 malic enzyme; Reviewe 89.0 1.4 3.7E-05 23.0 5.9 41 3-43 192-235 (761)
413 TIGR03466 HpnA hopanoid-associ 88.9 1 2.6E-05 24.1 5.1 34 1-37 1-35 (328)
414 PRK08328 hypothetical protein; 88.9 0.81 2.1E-05 24.9 4.6 34 3-36 27-61 (230)
415 COG0026 PurK Phosphoribosylami 88.8 1.2 3E-05 23.7 5.3 37 1-39 1-37 (375)
416 cd01492 Aos1_SUMO Ubiquitin ac 88.7 0.76 1.9E-05 25.1 4.3 36 2-37 20-56 (197)
417 cd00300 LDH_like L-lactate deh 88.6 0.78 2E-05 25.0 4.3 32 6-37 1-34 (300)
418 cd00757 ThiF_MoeB_HesA_family 88.6 1 2.6E-05 24.1 4.9 35 3-37 21-56 (228)
419 cd01338 MDH_choloroplast_like 88.5 1.3 3.3E-05 23.4 5.4 31 6-36 5-43 (322)
420 PRK06718 precorrin-2 dehydroge 88.5 1.1 2.9E-05 23.9 5.1 33 3-35 10-42 (202)
421 cd05291 HicDH_like L-2-hydroxy 88.5 1 2.6E-05 24.2 4.8 32 6-37 3-36 (306)
422 KOG0024 consensus 88.4 1.7 4.4E-05 22.5 6.0 11 276-286 267-277 (354)
423 PRK06719 precorrin-2 dehydroge 88.1 1.2 3.2E-05 23.5 5.1 31 5-35 15-45 (157)
424 PRK09599 6-phosphogluconate de 88.1 0.84 2.1E-05 24.8 4.2 34 1-37 1-34 (301)
425 PRK08762 molybdopterin biosynt 88.1 1 2.6E-05 24.2 4.6 28 6-33 62-90 (379)
426 PRK07878 molybdopterin biosynt 88.0 1.1 2.7E-05 24.0 4.7 33 4-36 43-76 (392)
427 pfam10100 DUF2338 Uncharacteri 88.0 1.5 3.9E-05 22.9 5.5 34 1-36 1-35 (429)
428 cd01483 E1_enzyme_family Super 87.9 1.2 3.1E-05 23.6 4.9 32 6-37 2-34 (143)
429 PRK11559 garR tartronate semia 87.9 0.97 2.5E-05 24.3 4.4 34 1-37 2-35 (295)
430 PRK08223 hypothetical protein; 87.8 1.1 2.9E-05 23.8 4.8 35 3-37 27-62 (287)
431 PRK06019 phosphoribosylaminoim 87.8 1.4 3.4E-05 23.3 5.1 32 6-37 10-41 (377)
432 COG0281 SfcA Malic enzyme [Ene 87.8 1.4 3.7E-05 23.0 5.2 16 271-286 312-328 (432)
433 KOG1335 consensus 87.6 0.29 7.4E-06 28.2 1.6 59 113-172 258-322 (506)
434 PRK11154 fadJ multifunctional 87.5 0.79 2E-05 25.0 3.8 33 5-37 311-344 (706)
435 PRK05600 thiamine biosynthesis 87.4 1.3 3.2E-05 23.5 4.8 35 3-37 41-76 (370)
436 cd01065 NAD_bind_Shikimate_DH 87.3 1.3 3.3E-05 23.4 4.7 34 3-36 19-53 (155)
437 PRK12490 6-phosphogluconate de 87.2 1.1 2.7E-05 24.1 4.3 34 1-37 1-34 (298)
438 PRK07411 hypothetical protein; 87.2 1.3 3.2E-05 23.5 4.7 33 4-36 39-72 (390)
439 pfam01488 Shikimate_DH Shikima 87.2 1.3 3.2E-05 23.5 4.7 33 4-36 13-46 (134)
440 PRK04690 murD UDP-N-acetylmura 87.2 1.1 2.9E-05 23.8 4.5 28 5-32 10-37 (468)
441 PRK00726 murG N-acetylglucosam 87.1 1.1 2.9E-05 23.8 4.4 31 1-33 1-36 (359)
442 cd01485 E1-1_like Ubiquitin ac 87.0 1.1 2.9E-05 23.9 4.3 36 2-37 18-54 (198)
443 cd00650 LDH_MDH_like NAD-depen 87.0 1.2 3E-05 23.7 4.4 32 6-37 1-37 (263)
444 COG0451 WcaG Nucleoside-diphos 86.7 1.7 4.3E-05 22.5 5.1 33 6-38 3-36 (314)
445 PRK06483 short chain dehydroge 86.5 1.7 4.2E-05 22.6 5.0 35 1-36 1-36 (236)
446 pfam10727 Rossmann-like Rossma 86.5 0.67 1.7E-05 25.5 3.0 29 8-36 2-30 (111)
447 PRK05597 molybdopterin biosynt 86.2 1.6 4.1E-05 22.7 4.8 33 4-36 29-62 (355)
448 cd00704 MDH Malate dehydrogena 86.2 1.2 3E-05 23.7 4.0 33 1-36 1-41 (323)
449 COG0686 Ald Alanine dehydrogen 85.7 0.87 2.2E-05 24.7 3.2 13 21-33 25-37 (371)
450 cd01484 E1-2_like Ubiquitin ac 85.7 1.7 4.3E-05 22.5 4.7 31 6-36 2-33 (234)
451 TIGR00562 proto_IX_ox protopor 85.7 1.2 3.1E-05 23.6 3.9 34 4-37 3-42 (556)
452 TIGR01777 yfcH conserved hypot 85.4 1.2 3.1E-05 23.6 3.9 130 6-143 1-139 (307)
453 KOG2495 consensus 85.2 2.7 6.9E-05 21.1 8.0 46 122-167 123-174 (491)
454 cd01489 Uba2_SUMO Ubiquitin ac 85.1 1.9 5E-05 22.1 4.7 31 6-36 2-33 (312)
455 PRK06101 short chain dehydroge 85.0 2.3 5.9E-05 21.5 5.1 34 1-36 1-35 (241)
456 pfam03435 Saccharop_dh Sacchar 84.9 1.6 4.1E-05 22.7 4.3 31 6-36 1-33 (384)
457 PRK12439 NAD(P)H-dependent gly 84.8 2 5E-05 22.1 4.6 31 4-35 7-37 (340)
458 PRK13771 putative alcohol dehy 84.7 2.1 5.4E-05 21.8 4.8 11 275-285 248-258 (332)
459 TIGR03376 glycerol3P_DH glycer 84.7 1.9 4.9E-05 22.1 4.6 30 6-35 2-39 (342)
460 PRK12446 N-acetylglucosaminyl 84.5 1.8 4.6E-05 22.3 4.4 32 1-34 1-37 (352)
461 cd01078 NAD_bind_H4MPT_DH NADP 84.5 2.2 5.6E-05 21.7 4.8 32 5-36 30-62 (194)
462 PRK00258 aroE shikimate 5-dehy 84.3 1.9 4.9E-05 22.1 4.4 15 45-59 18-33 (275)
463 cd01486 Apg7 Apg7 is an E1-lik 84.3 1.4 3.7E-05 23.0 3.8 31 6-36 2-33 (307)
464 PRK06849 hypothetical protein; 84.3 2.4 6.1E-05 21.4 4.9 32 5-36 6-38 (387)
465 PRK09422 alcohol dehydrogenase 84.3 2.1 5.3E-05 21.8 4.6 12 275-286 254-265 (338)
466 cd05212 NAD_bind_m-THF_DH_Cycl 83.9 2.5 6.3E-05 21.3 4.9 28 6-33 31-59 (140)
467 COG1648 CysG Siroheme synthase 83.9 2.3 5.9E-05 21.5 4.7 32 5-36 14-45 (210)
468 cd05311 NAD_bind_2_malic_enz N 83.6 3.1 8E-05 20.6 6.2 45 4-48 26-73 (226)
469 PRK08267 short chain dehydroge 83.6 2.3 5.9E-05 21.6 4.6 34 1-36 1-35 (258)
470 PRK12861 malic enzyme; Reviewe 83.6 2.6 6.5E-05 21.2 4.8 41 3-43 187-230 (762)
471 COG0039 Mdh Malate/lactate deh 83.6 1.9 4.8E-05 22.2 4.2 31 6-36 3-35 (313)
472 pfam04321 RmlD_sub_bind RmlD s 83.4 2.5 6.3E-05 21.4 4.7 31 6-36 1-32 (284)
473 PRK08340 glucose-1-dehydrogena 83.3 2.2 5.7E-05 21.6 4.4 33 1-36 1-34 (259)
474 PRK08655 prephenate dehydrogen 83.2 2.6 6.7E-05 21.1 4.7 33 1-36 1-34 (441)
475 PRK09310 aroDE bifunctional 3- 83.1 2.3 5.9E-05 21.5 4.5 17 153-169 158-174 (477)
476 PRK05671 aspartate-semialdehyd 82.7 2.1 5.3E-05 21.9 4.1 32 1-32 1-37 (336)
477 COG2084 MmsB 3-hydroxyisobutyr 82.6 2.7 6.9E-05 21.0 4.6 34 5-38 2-35 (286)
478 TIGR02964 xanthine_xdhC xanthi 82.6 1.9 4.8E-05 22.2 3.8 33 4-36 116-149 (270)
479 pfam03807 F420_oxidored NADP o 82.5 2.2 5.7E-05 21.7 4.2 29 6-34 2-30 (93)
480 TIGR03309 matur_yqeB selenium- 82.3 2.3 5.9E-05 21.5 4.2 42 6-47 1-42 (256)
481 pfam05368 NmrA NmrA-like famil 82.1 2.8 7.1E-05 20.9 4.6 32 6-37 1-33 (232)
482 COG4716 Myosin-crossreactive a 81.8 0.5 1.3E-05 26.4 0.6 31 6-36 25-59 (587)
483 TIGR01771 L-LDH-NAD L-lactate 81.6 1.2 3.2E-05 23.5 2.6 30 8-37 1-32 (302)
484 PRK05294 carB carbamoyl phosph 81.4 3.6 9.1E-05 20.1 4.9 32 6-37 10-52 (1063)
485 TIGR01035 hemA glutamyl-tRNA r 81.0 3 7.5E-05 20.8 4.3 31 5-35 187-218 (436)
486 PRK12549 shikimate 5-dehydroge 80.8 3.1 7.9E-05 20.6 4.4 20 345-364 263-282 (284)
487 CHL00194 ycf39 Ycf39; Provisio 80.6 3.6 9.1E-05 20.1 4.7 34 1-37 1-35 (319)
488 PRK12815 carB carbamoyl phosph 80.5 3.4 8.8E-05 20.3 4.5 32 6-37 10-52 (1068)
489 TIGR02355 moeB molybdopterin s 80.3 2.3 5.9E-05 21.6 3.6 35 2-36 23-58 (240)
490 PRK12557 H(2)-dependent methyl 79.8 4.2 0.00011 19.6 5.1 39 14-59 31-69 (341)
491 PRK05599 hypothetical protein; 79.1 3.4 8.7E-05 20.3 4.2 31 1-36 1-33 (246)
492 PRK08643 acetoin reductase; Va 78.9 4.5 0.00011 19.4 4.9 36 1-36 1-36 (256)
493 PRK12550 shikimate 5-dehydroge 78.7 4.2 0.00011 19.7 4.5 31 6-36 125-156 (272)
494 cd01488 Uba3_RUB Ubiquitin act 78.6 4.1 0.0001 19.7 4.4 28 6-33 2-30 (291)
495 PRK00045 hemA glutamyl-tRNA re 78.6 4.4 0.00011 19.5 4.6 30 6-35 185-215 (429)
496 PRK00257 erythronate-4-phospha 78.3 4.3 0.00011 19.6 4.5 29 6-34 119-147 (379)
497 TIGR02354 thiF_fam2 thiamine b 78.0 2.2 5.6E-05 21.7 2.9 27 6-32 24-50 (200)
498 COG3640 CooC CO dehydrogenase 77.8 4.8 0.00012 19.2 4.7 33 1-36 1-39 (255)
499 KOG2305 consensus 77.6 2.4 6.2E-05 21.4 3.1 33 1-33 1-33 (313)
500 cd01493 APPBP1_RUB Ubiquitin a 77.4 3.3 8.4E-05 20.4 3.7 36 1-36 18-54 (425)
No 1
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=100.00 E-value=0 Score=629.84 Aligned_cols=375 Identities=32% Similarity=0.510 Sum_probs=351.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CEEEEEECCCC------C----CCCCEEEECHHHHHHHHHCCCHHHHHH-CCC
Q ss_conf 2999979089999999999789-----85999828855------5----578368887889999998899478886-047
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-----FLTALVSPRSF------L----QDLRTTMLMGEGIDFLKEINVWDFLQD-IAE 68 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-----~~v~iiE~~~~------~----~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~ 68 (384)
||+||||||+|+++|++|++.+ ++|.+||..+. . .|.|+++|++.|.++|++||+|+++.. ...
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~ 80 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 80 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 96888473889999999841863124731799605211442211258765522010107999999867964452012126
Q ss_pred CCCCEEEEECCCCCCCCC---CCCCCCHHCC--CCCCCCHHHHCCHHHHHHHHHHHCCC---CCCCCEEEEEECCC----
Q ss_conf 123418994257655454---4434502228--75312011100000000123664798---32342056530268----
Q gi|254780842|r 69 PVSSFRLVDITDRLITAP---DAIFHSSEIG--LDAFGYNIPNHVLMESFAEKISQDPL---IHCFDALANEIQIG---- 136 (384)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~g~~i~r~~L~~~L~~~~~~~~~---~~~~~~~v~~i~~~---- 136 (384)
|+..++++|..... ..+ .+.|++.+.+ .+.+||+|++..|.++|++.+.+.++ .......++.+..+
T Consensus 81 p~~~~~V~D~~~~g-~~~~P~~~~F~~~~~~~~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (445)
T TIGR01988 81 PIRDIHVSDGGSFG-RAPHPAALHFDADEVGGPAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKN 159 (445)
T ss_pred CCCEEEEEECCCCC-CCCCCEEEEECHHHCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCC
T ss_conf 32048887267888-88886368744344178801123671188999999999996689647751672147740367756
Q ss_pred -CEEEEEECCCCCE---EEEEEEEEECCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCEEEEEECCC-CCCCCCC
Q ss_conf -7178983023201---211123530375432000378733222-243047876411478861178872278-7542100
Q gi|254780842|r 137 -EEEVTILLSTGQQ---IVGQFLIGSDGRNSSVRRQMGYGENKW-SYPQKALVLNFQHSMPHNGRCVEFHKS-LGTITQI 210 (384)
Q Consensus 137 -~~~v~v~~~dg~~---i~adlvVgADG~~S~vR~~l~~~~~~~-~y~~~~l~~~~~~~~~~~~~a~~~f~~-~G~~a~l 210 (384)
.+.++++++||++ ++|+|||||||.||.||+.+||+.+.+ +|.|+|+|++|+++.||+++|||+|++ .||+|+|
T Consensus 160 ~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR~~~gI~~~~~R~Y~Q~a~Va~v~~~~~h~~~A~erF~~~~GP~AlL 239 (445)
T TIGR01988 160 DSDEVELTLSDGRQKLLLRARLLVGADGANSKVRQLAGIPTTGWRDYGQSAVVANVKHERPHQGTAWERFLPDTGPLALL 239 (445)
T ss_pred CCCCEEEEECCCCEEEEEEECEEEEECCCCHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEC
T ss_conf 88607999708947678985327873586525799718884301164553899999714788964799982799857873
Q ss_pred CCCC---CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------------------CCCCCEE
Q ss_conf 0123---20112675075673245532234678877630675467----------------------------6211102
Q gi|254780842|r 211 PLRE---NFSSLVWIMESQEADFYYKLPVNEIARRLEQYLYPVIG----------------------------KIEVVTD 259 (384)
Q Consensus 211 P~~~---~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~~~~~ 259 (384)
|+++ +++|+||+.++++++.+.++++++|.++|++.|+..+| .+...++
T Consensus 240 PL~~~dd~~~slVW~~~~~~A~~L~~l~~~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~ 319 (445)
T TIGR01988 240 PLPDNDDNRSSLVWTLPPEEAERLLALDDEEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGE 319 (445)
T ss_pred CCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCC
T ss_conf 58888896038997389799999867899899999999853315796556789999999873202440068237887687
Q ss_pred EEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 232022334304565379421011001138445653211212389999998525-----799079999999986799999
Q gi|254780842|r 260 VQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE-----HMSFRAIGNRYHAMRRGDIIK 334 (384)
Q Consensus 260 ~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~-----~~~~~~~l~~Y~~~R~~~~~~ 334 (384)
+..|||...++++++++|++|||||||++||++|||+|+|++|+..|++.|.+. ..+....|++|+++|++++..
T Consensus 320 R~~fPL~~~~A~~yv~~R~aLiGDAAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~~L~~Y~r~R~~dn~~ 399 (445)
T TIGR01988 320 RAAFPLSLRHAKRYVAPRLALIGDAAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLAVLQRYERRRRFDNAA 399 (445)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 63044033435876259858980541357871001002007899999999999884566857777899999974998999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 9999999999863679899999999999985083789999998619
Q gi|254780842|r 335 RIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 335 ~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
++.+||.|+++|++++|+++.+|++||++++++||||+.|+++|||
T Consensus 400 ~~~~~D~L~~lF~n~~~pl~~lR~~GL~~~~~~pplK~~~~~~a~G 445 (445)
T TIGR01988 400 MLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARQAMG 445 (445)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999999998740687789999989999874040589999998529
No 2
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=0 Score=593.73 Aligned_cols=382 Identities=42% Similarity=0.664 Sum_probs=360.3
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 97--0029999790899999999997898599982885555783688878899999988994788860471234189942
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|| +|||+||||||+||++|+.|++.|++|+|+|+++...+.|+++|+++++++|+++|+|+.+...+.|+..+++++.
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~d~ 80 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPYADLRTTALLGPSIRFLERLGVWARLAPHAAPLQSMRIVDA 80 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEC
T ss_conf 99788868999906899999999987899889995799888886799868999999988987888751485226999968
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 57655454443450222875312011100000000123664798323420565302687178983023201211123530
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgA 158 (384)
.+.....+...|++.+.+.+.+||+|++..|.+.|.+++.+.+++.+++..++.++.++++++++++||+++++||||||
T Consensus 81 ~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~i~a~llIgA 160 (386)
T PRK07494 81 TGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDEVTVTLADGTTLSARLVVAA 160 (386)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCCCEEEEEEEEEE
T ss_conf 98511376410353224776632101269999999999971899799777068999669848999789969998699990
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
Q ss_conf 37543200037873322224304787641147886117887227875421000123201126750756732455322346
Q gi|254780842|r 159 DGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNE 238 (384)
Q Consensus 159 DG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~~~ 238 (384)
||++|.||+.+|++...++|+|.++++++.++.||.+.++|+|++.||++++|+++++.++||+.++++++.+...++++
T Consensus 161 DG~~S~vR~~~gi~~~~~~y~q~~~v~~v~~~~p~~~~a~~~~~~~Gp~a~lPl~~~~~~~vw~~~~~~~~~~~~~~~~~ 240 (386)
T PRK07494 161 DGRNSPAREAAGIGVRTWSYPQKALVFNFTHSRPHENVSTEFHTEHGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAA 240 (386)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCHHHHHHHHCCHHH
T ss_conf 58887431225756444653012799853135666632379965998589998699956999993614589876338799
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CC
Q ss_conf 7887763067546762111022320223343045653794210110011384456532112123899999985257--99
Q gi|254780842|r 239 IARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEH--MS 316 (384)
Q Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~--~~ 316 (384)
+.+.+++.++..++.++..+++..||+....+++|.++||+|+|||||+|||++|||+|+||+||.+|+++|.+.. ..
T Consensus 241 ~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~La~~L~~~~~~~~ 320 (386)
T PRK07494 241 LSAAIEERSQSMLGKLTLEPGRQLWPLSGLVPHRFAANRTALVGEAAHVFPPIGAQGLNLGLRDVADLVEIVEDRGEDPG 320 (386)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998664157537515515602464115665168827861222237952200576669999999999986445867
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 317 FRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 317 ~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
...+|++||++|++++..++.+||.++++|++++++++.+|+.+|.+++++||+|++|+|||||++
T Consensus 321 ~~~~L~~Y~~~Rr~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lk~~~~r~a~g~~ 386 (386)
T PRK07494 321 SAAVLAAYDRARRPDILSRTASIDLLNRSLLSDMLPAQDLRAAGLHLLYSFGPLRRLFMREGLGPG 386 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 499999999999899999999999999998589679999999999998528899999999865999
No 3
>PRK08013 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=574.94 Aligned_cols=380 Identities=25% Similarity=0.413 Sum_probs=345.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-------CCCCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCC
Q ss_conf 9700299997908999999999978985999828855-------55783688878899999988994788860-471234
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-------LQDLRTTMLMGEGIDFLKEINVWDFLQDI-AEPVSS 72 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-------~~~~r~~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~ 72 (384)
||+|||+||||||+|+++|+.|++.|++|+|+|+++. ..+.|+.+|++.+.++|+++|+|+.+... ..|+..
T Consensus 1 M~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEE
T ss_conf 99678899993599999999997189958999189987677888877044400899999999879807668606776115
Q ss_pred EEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCEEE
Q ss_conf 18994257655454443450222875312011100000000123664798323-42056530268717898302320121
Q gi|254780842|r 73 FRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQIV 151 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~i~ 151 (384)
+++++... .....|+..+.+.+.+||++++..|.+.|++++.+.+++.+ .+..+.++..+++.+.++++||++++
T Consensus 81 ~~v~~~~~----~g~~~~~~~~~~~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~ 156 (400)
T PRK08013 81 MEVWDKDS----FGHISFDDQSMGYSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLT 156 (400)
T ss_pred EEEECCCC----CCEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 79863787----75243262013875230430208899999999986898299868668998716971599947998997
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC-CCEEEEEEECHHHHHH
Q ss_conf 112353037543200037873322224304787641147886117887227875421000123-2011267507567324
Q gi|254780842|r 152 GQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRE-NFSSLVWIMESQEADF 230 (384)
Q Consensus 152 adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~-~~~~ivw~~~~~~~~~ 230 (384)
++|||||||++|.||+.+|++...++|+|++++++++++.||.+.++|+|++.||++++|+++ +.+++||++++++.+.
T Consensus 157 a~lvVgADG~~S~vR~~~gi~~~~~~y~q~~lv~~v~~~~~~~~~a~q~f~~~G~la~LPl~~~~~~~~vw~~~~~~~~~ 236 (400)
T PRK08013 157 ARLVIGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQR 236 (400)
T ss_pred EEEEEECCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCHHHHHH
T ss_conf 42899978876132331388872337785399984125676656416764499757999779998799999558789999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55322346788776306754676211102232022334304565379421011001138445653211212389999998
Q gi|254780842|r 231 YYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLF 310 (384)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l 310 (384)
+...++++|.+.+...++..++.++..+++..||+..+++++|+++|++|+|||||+|||++|||+|+||+||.+|+++|
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~a~~~~~~rv~LiGDAAH~~hP~aGQGlNlgi~Da~~L~~~L 316 (400)
T PRK08013 237 MQQAPEEEFNRALNIAFDNRLGLCKLESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAEL 316 (400)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHEEEHHHCCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98535999999998762000564089742347434450102332775577322554179621263626799999999999
Q ss_pred HCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf 525-----79907999999998679999999999999998636798999999999999850837899999986198889
Q gi|254780842|r 311 QSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLRDL 384 (384)
Q Consensus 311 ~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~~~ 384 (384)
.+. ..+...+|++||++|++++..++..|+.++++|++++|+++.+|+.+|++++++|++|++++++||||++|
T Consensus 317 ~~~~~~~~d~g~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~gl~~~~~~p~lK~~~~~~a~Gl~~~ 395 (400)
T PRK08013 317 RRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDL 395 (400)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 9998548897768999999999899999999999999999879977999999999999814999999999997699974
No 4
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=576.67 Aligned_cols=378 Identities=26% Similarity=0.390 Sum_probs=345.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCC------CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCC
Q ss_conf 97002999979089999999999789---859998288555------578368887889999998899478886047123
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG---FLTALVSPRSFL------QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVS 71 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g---~~v~iiE~~~~~------~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~ 71 (384)
||+|||+||||||+|+++|++|++.| ++|+|+|+.+.. .+.|+++|+++++++|+++|+|+.+.+.+.|+.
T Consensus 1 M~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~pi~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIR 80 (395)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf 97189899993899999999999618899749999378854456888774478888999999998799288786276542
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECCCCCEE
Q ss_conf 41899425765545444345022287531201110000000012366479832-34205653026871789830232012
Q gi|254780842|r 72 SFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLSTGQQI 150 (384)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~dg~~i 150 (384)
.+++++... .....+++.+.+.+.+||++++.+|.+.|.+.+.+.+.+. .++.++++++.++++++++++||+++
T Consensus 81 ~i~v~d~~~----~~~~~~~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i 156 (395)
T PRK05732 81 HIHVSDRGH----AGFVRLDAEDYGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDDGETL 156 (395)
T ss_pred EEEEEECCC----CCCEECCHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 899840686----7721056332387656543236999999999884089969976988999998289279998799899
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHH
Q ss_conf 11123530375432000378733222243047876411478861178872278754210001232011267507567324
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADF 230 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~ 230 (384)
++||||||||++|.||+++|++..+++|+|++++++++++.+|.+.++|+|.+.||++++|++++++++||+.++++.+.
T Consensus 157 ~a~lvVgADG~~S~vR~~lgi~~~~~~y~~~~lv~~v~~~~~~~~~a~~~f~~~Gp~allP~~~~~~~~vw~~~~~~~~~ 236 (395)
T PRK05732 157 TARLLVAADGTHSALREQLGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEE 236 (395)
T ss_pred EECEEEEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCHHHHHH
T ss_conf 83799992899625445314676566575079998402456766631788759998798766899799999437343777
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55322346788776306754676211102232022334304565379421011001138445653211212389999998
Q gi|254780842|r 231 YYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLF 310 (384)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l 310 (384)
+..++++++.++++..+++.++.++.++++..||+....+++|+++||+|+|||||+|||++|||+|+||+||.+|+++|
T Consensus 237 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~L~~~L 316 (395)
T PRK05732 237 VLSWSDAQFLAELQSAFGWRLGRITQAGKRSAYPLALVTAAEQISHRLVLVGNAAQTLHPIAGQGFNLGLRDVMSLAETL 316 (395)
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 74399899999999974534564378523224617777688874178067505442689630550526899999999999
Q ss_pred HCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 5257-----99079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 311 QSEH-----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 311 ~~~~-----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
.+.. .+...+|++|+++|++++..++.+|+.++++|.++||+++.+|+.+|.+++++|++|++|+++|||+.
T Consensus 317 a~~~~~~~~~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lk~~~~~~a~G~~ 393 (395)
T PRK05732 317 TAAHERGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWPPLVVGRNLGLMAMDLLPPARDWLARRTLGWV 393 (395)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 99874499977399999999998999999999999999998699679999999999998528899999999960865
No 5
>PRK08948 consensus
Probab=100.00 E-value=0 Score=572.98 Aligned_cols=375 Identities=26% Similarity=0.369 Sum_probs=345.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCC------CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEE
Q ss_conf 0299997908999999999978---9859998288555------578368887889999998899478886047123418
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFL------QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFR 74 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~------~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~ 74 (384)
|||+||||||+|+++|++|++. +++|+|+|+.+.. .|.|+++|+++|+++|+++|+|+.+.+.+.|+..++
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~~s~~~L~~lGvw~~l~~~~~pi~~i~ 80 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAAGTCQQLARIGVWSALADCATAITHVH 80 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHCCCCCEEE
T ss_conf 94999995899999999998616799849998278875445788884345756999999998799477785066300789
Q ss_pred EEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 99425765545444345022287531201110000000012366479832-34205653026871789830232012111
Q gi|254780842|r 75 LVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLSTGQQIVGQ 153 (384)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~dg~~i~ad 153 (384)
+++... .....+++.+.+.+.+||++++.++.+.|++.+.+.+++. +++.++++++.+++++++++++|++++++
T Consensus 81 v~d~~~----~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~~~a~ 156 (392)
T PRK08948 81 VSDRGH----AGFVTLAAEDYGVAALGYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQESVTVTLDNGETLQGK 156 (392)
T ss_pred EEECCC----CCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEEC
T ss_conf 840787----7625437666088531127879999999999997589987855876899885588279997899899837
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 23530375432000378733222243047876411478861178872278754210001232011267507567324553
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYK 233 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~ 233 (384)
|||||||++|.||+.+|++...++|+|+++++++.++.+|.+.++|+|++.||+|++|++++++++||+.+++..+.+.+
T Consensus 157 llVgaDG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~~~~~a~q~F~~~Gp~allPl~~~~~s~Vw~~~~~~~~~~~~ 236 (392)
T PRK08948 157 LLVAADGSHSALAQACGIDWQQHDYEQVAVIANVTTSEPHQGRAFERFTEHGPLALLPMSDGRSSLVWCHPLERREEVLS 236 (392)
T ss_pred EEEEECCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCHHHHHHHHC
T ss_conf 89991899737777430676256676369994133467876479998569997699877999699999678888998864
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22346788776306754676211102232022334304565379421011001138445653211212389999998525
Q gi|254780842|r 234 LPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE 313 (384)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~ 313 (384)
+++++|.+++++.|++.++++..++++..||+....+++|+++||+|+|||||+|||++|||+|+||+||.+|+++|.+.
T Consensus 237 ~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~ihP~aGQGlNlGl~Da~~La~~L~~~ 316 (392)
T PRK08948 237 WSDERFLAELQQAFGWRLGKITHAGKRSAYPLALRTAAQHISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQA 316 (392)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999984440244477034124726776789874167367320453279730461215789999999999999
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 79-----9079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 314 HM-----SFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 314 ~~-----~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
.. +...+|++|+++|++++..++.+|+.++++|++++++++.+|+.+|.+++++|++|++|+++|||+-
T Consensus 317 ~~~g~d~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lK~~~~~~a~G~~ 390 (392)
T PRK08948 317 QERGEDIGDYAVLSRYQQRRQSDRQATIGVTDGLVHLFANRWAPLVVGRNLGLMAMELFPPARDPLARRTLGWV 390 (392)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 85499977199999999999999999999999999998699768999999999998518999999999861885
No 6
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=0 Score=569.61 Aligned_cols=375 Identities=26% Similarity=0.466 Sum_probs=340.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-C------CCCCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCC
Q ss_conf 970029999790899999999997898599982885-5------55783688878899999988994788860-471234
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS-F------LQDLRTTMLMGEGIDFLKEINVWDFLQDI-AEPVSS 72 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~-~------~~~~r~~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~ 72 (384)
||+|||+||||||+|+++|+.|++.|++|+|+|+++ . ..+.|+.+|+++++++|+++|+|+.+... ..|+..
T Consensus 1 M~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~i~~~~~~~~~~ 80 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEASQPMDIRVSAISQNSVDLLESLGAWSSIVAMRVCPYKR 80 (384)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCCE
T ss_conf 98189999992499999999999579959999689987666667877056786799999999879864687614786002
Q ss_pred EEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCEEE
Q ss_conf 18994257655454443450222875312011100000000123664798323-42056530268717898302320121
Q gi|254780842|r 73 FRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQIV 151 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~i~ 151 (384)
+..++.. .....|++.+.+.+.+||++++..+...|++++.+.+++.+ .+..+.+++..++.+.+++++|++++
T Consensus 81 ~~~~~~~-----~~~~~f~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~~~~~v~l~~g~~i~ 155 (384)
T PRK08849 81 LETWEHP-----ECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSAEGNRVTLESGAEIE 155 (384)
T ss_pred EEEECCC-----CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEE
T ss_conf 5530177-----64412485343863000034379999999999984899199838778898853881499978999998
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 11235303754320003787332222430478764114788611788722787542100012320112675075673245
Q gi|254780842|r 152 GQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFY 231 (384)
Q Consensus 152 adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~ 231 (384)
++|||||||++|.||++++++...++|.|++++++++++.|+.+.+||+|.+.||++++|+++++.++||+.+++..+.+
T Consensus 156 a~llIgADG~~S~vR~~~gi~~~~~~y~q~~~v~~v~~~~~~~~~a~q~f~~~gp~a~lPl~~~~~s~vw~~~~~~~~~~ 235 (384)
T PRK08849 156 AKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLQGNQGSLVWYDSPKRIKQL 235 (384)
T ss_pred EEEEEEEECCCHHHHHHCCCCEECCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCHHHHHHH
T ss_conf 54799920786466773388545047745899999852688777508998499972798627996689996587779875
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53223467887763067546762111022320223343045653794210110011384456532112123899999985
Q gi|254780842|r 232 YKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQ 311 (384)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~ 311 (384)
...+++++.+++..+++..+++++ +.++..||+...++++|+++||+|+|||||+|||++|||+|+||+||.+|++.|.
T Consensus 236 ~~~~~~~~~~~l~~~~~~~l~~~~-~~~~~~~pl~~~~a~~~~~~rv~LiGDAAH~~~P~aGQG~N~gi~Da~~L~~~l~ 314 (384)
T PRK08849 236 SAMSPEQLRSEILRHFPAELGEFK-VLQFGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLEETE 314 (384)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCEE-EEEEECCHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 439989999999987303207569-9985033555333355236888997252334697212524046999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 2579907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r 312 SEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 312 ~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
+.....+.+|++||++|++++..++.+|+.++++|++++++++.+|+.+|.+++++||||++|+++||||
T Consensus 315 ~~~~~~~~~L~~Y~~~R~~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~Gl 384 (384)
T PRK08849 315 KQGALNDAAFARYERRRRPDNLLMQTGMDLFYKTFSNDLTPLKLLRNAALKLAEHSGPLKTQVLKYALGL 384 (384)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 4688779999999999989999999999999999769957999999999999850889999999986699
No 7
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=0 Score=568.31 Aligned_cols=375 Identities=24% Similarity=0.427 Sum_probs=342.3
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-------CCCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCC
Q ss_conf 97--00299997908999999999978985999828855-------5578368887889999998899478886-04712
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-------LQDLRTTMLMGEGIDFLKEINVWDFLQD-IAEPV 70 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-------~~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~~~ 70 (384)
|. +|||+||||||+|+++|+.|++.|++|+|+|+++. .+|.|+.+|++.++++|+++|+|+.+.. ...|+
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPY 80 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf 99999848999936999999999986699789994899876665579873389878899999998888487786256871
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCE
Q ss_conf 3418994257655454443450222875312011100000000123664798323-420565302687178983023201
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQ 149 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~ 149 (384)
..+..++..+ ....|++.+.+.+.+||+|++..|.+.|++++.+.+++.+ ++.+++.++.++++++++++||++
T Consensus 81 ~~~~~~~~~~-----~~~~f~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~ 155 (391)
T PRK08020 81 RRLETWEWET-----AHVVFDAAELKLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELADGET 155 (391)
T ss_pred EEEEEECCCC-----CEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEECCCCE
T ss_conf 4898612788-----55872544328975401212699999999999838996999588026889749868999489999
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf 21112353037543200037873322224304787641147886117887227875421000123201126750756732
Q gi|254780842|r 150 IVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEAD 229 (384)
Q Consensus 150 i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~ 229 (384)
+++||||||||++|.||+.+|++...++|+|++++++++++.+|.+.+||+|++.||++++|+.++++++||+.+++..+
T Consensus 156 i~a~lvIgADG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~~~~~a~q~f~~~Gp~alLPl~~~~~slVw~~~~~~~~ 235 (391)
T PRK08020 156 IQAKLVIGADGANSQVRQMAGIGVHAWQYAQSCMLITVECENDPGDSTWQQFTPDGPRAFLPLFDNWASLVWYDSPARIR 235 (391)
T ss_pred EEECEEEEECCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCHHHHH
T ss_conf 98379999079970544522788635787624899986146777763289980899778862589868999947877788
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 45532234678877630675467621110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 230 FYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
++.+.+.++|.+++.+.++..++.++..+. ..||+...++++|+++|++|+|||||+|||++|||+|+||+||.+|+++
T Consensus 236 ~l~~~~~~~~~~~l~~~~~~~lg~i~~~~~-~~fpl~~~~a~~~~~~rvvLiGDAAH~ihP~aGQGlNlGl~Da~~La~~ 314 (391)
T PRK08020 236 QLQAMSMAQLQAEIAAHFPSRLGAVTPLAA-GAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDV 314 (391)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCEEEEEEE-EECHHHHHHHHHHHCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 765199999999999873133260579753-0204765334364059888861423148954234142569999999999
Q ss_pred HHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 8525-----79907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r 310 FQSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 310 l~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
|.+. ..+...+|++||++|++++..++.+|+.++++|++++|+++.+|+.+|.+++++|+||++|+++||||
T Consensus 315 L~~~~~~~~~~g~~~~L~~Y~~~R~~d~~~~~~~~d~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lk~~~~~~a~Gl 391 (391)
T PRK08020 315 LVNARSYGEAWASYPVLKRYQRRRMADNFMMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL 391 (391)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 99998608996609999999999899999999999999999869967999999999999854999999999986699
No 8
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=0 Score=567.98 Aligned_cols=377 Identities=22% Similarity=0.381 Sum_probs=342.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------CCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCC
Q ss_conf 97002999979089999999999789859998288555---------578368887889999998899478886-04712
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL---------QDLRTTMLMGEGIDFLKEINVWDFLQD-IAEPV 70 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~---------~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~~~ 70 (384)
|+ +||+||||||+|+++|+.|++.|++|+|+|+.+.. .+.|+++|++.|+++|+++|+|+.+.. ...|+
T Consensus 1 m~-~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~l~~~~~~p~ 79 (405)
T PRK05714 1 MR-ADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPY 79 (405)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf 99-88999990599999999996189978999589977787766778984255677998999998798165687357761
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEE
Q ss_conf 34189942576554544434502228753120111000000001236647983234205653026871789830232012
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQI 150 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i 150 (384)
..+++++.... ....|+..+.+.+.+||++++..+.+.|.+.+.+.+.....+.++.+++...++++++++||+++
T Consensus 80 ~~~~v~d~~~~----~~~~f~~~~~~~~~lg~vv~~~~l~~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l~~g~~i 155 (405)
T PRK05714 80 SDMQVWDGSGT----GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQL 155 (405)
T ss_pred EEEEEECCCCC----CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEE
T ss_conf 24552058986----22764410147644411232699999999999727988984878999998388079996799798
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC----CEEEEEEECHH
Q ss_conf 11123530375432000378733222243047876411478861178872278754210001232----01126750756
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLREN----FSSLVWIMESQ 226 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~----~~~ivw~~~~~ 226 (384)
+++|||||||++|.||+.+|++...++|.|++++++++++.||.+.+||+|++.||++++|++++ ++++||+.+++
T Consensus 156 ~a~llVgADG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~~~~~a~q~F~~~Gpla~lPl~~~~~~~~~s~vws~~~~ 235 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSAPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPE 235 (405)
T ss_pred ECCEEEECCCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCHH
T ss_conf 63889995899856665135675023556448998411378766257999769997599974579976679999708889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 73245532234678877630675467621110223202233430456537942101100113844565321121238999
Q gi|254780842|r 227 EADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL 306 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L 306 (384)
+++.+.+.++++|.+++.+.++..++.+..++++..||+...++++|+++||+|+|||||+|||++|||+|+||+||.+|
T Consensus 236 ~a~~~~~~~~~~~~~~l~~~~~~~lg~i~~~~~~~~~pl~~~~a~~~~~~rv~LiGDAAH~~hP~aGQGlNlGl~Da~~L 315 (405)
T PRK05714 236 EAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQRHAKRYVEEGLALIGDAAHTIHPLAGQGVNLGFLDAAVL 315 (405)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEEHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99987639999999999987511136448834866743626676786426732432055358973034040559999999
Q ss_pred HHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 9998525-----79907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r 307 LNLFQSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 307 ~~~l~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
+++|.+. ..+...+|++|+++|++++..++.+|+.|+++|++++++++.+|+.+|.+++++|++|++|+++||||
T Consensus 316 a~~L~~a~~~g~~~g~~~~L~~Y~~~R~~~~~~~~~~~d~l~~lf~~~~~~l~~~R~~gl~~~~~~~~lk~~~~~~a~G~ 395 (405)
T PRK05714 316 AEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf 99999998629996669999999999899999999999999999869966899999999999842989999999986688
Q ss_pred C
Q ss_conf 8
Q gi|254780842|r 382 R 382 (384)
Q Consensus 382 ~ 382 (384)
+
T Consensus 396 ~ 396 (405)
T PRK05714 396 S 396 (405)
T ss_pred C
T ss_conf 9
No 9
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=0 Score=565.66 Aligned_cols=380 Identities=26% Similarity=0.406 Sum_probs=345.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC---CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 002999979089999999999789--85999828855---5578368887889999998899478886047123418994
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSF---LQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~---~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
+.||+||||||+|+++|+.|++.| ++|+++|+.+. ..+.|+++|+++++++|+++|+|+.+...+.|+..+.+++
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~s~~~L~~lGv~~~l~~~~~~i~~~~v~d 80 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWQEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
T ss_conf 98399999469999999999846999669998288666878887688867999999998798788775161002799984
Q ss_pred CCCCCCCCC-CCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 257655454-4434502228753120111000000001236647983234205653026871789830232012111235
Q gi|254780842|r 78 ITDRLITAP-DAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLI 156 (384)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvV 156 (384)
........+ ...|+.......+++|++++..|.+.|.+.+++.+....++.++++++.+++++++++++|++++++|||
T Consensus 81 ~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~llI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLADGSTLEARLLV 160 (403)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEE
T ss_conf 65577666420024643456887368745899999999999828998985885789997498079997899899986999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 30375432000378733222243047876411478861178872278754210001232011267507567324553223
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPV 236 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~ 236 (384)
||||++|.||+++|++..+++|+|++++++++++.||.+.++|+|++.||++++|+++++.++||+.+.+.++.+...++
T Consensus 161 gaDG~~S~VR~~lgi~~~~~~y~q~~iv~~v~~~~~~~~~a~~~f~~~Gp~a~lPl~~~~~s~vw~~~~~~~~~~~~~~~ 240 (403)
T PRK07333 161 AADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALDD 240 (403)
T ss_pred ECCCCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCHHHHHHHHCCCH
T ss_conf 83487613255239876587777428997303457775205899808986699646998335588057777887652898
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf 467887763067546762111022320223343045653794210110011384456532112123899999985257--
Q gi|254780842|r 237 NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEH-- 314 (384)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~-- 314 (384)
+.|..++.+.++..++.++.++++..||+...++++|+++||+|+|||||+|||++|||+|+||+||.+|+++|.+..
T Consensus 241 ~~~~~~l~~~~~~~~g~~~~~~~~~~~~l~~~~a~~~~~~rv~L~GDAAH~~~P~aGQGlNlgl~Da~~La~~L~~~~~~ 320 (403)
T PRK07333 241 LVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFIAPRFALVGDAAHVIHPIAGQGLNLGLKDVAALAEVVVEAARL 320 (403)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHHHHHHCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999985523555067146266417778888863377267511364279852660414689999999999999861
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf ---99079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 315 ---MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 315 ---~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
.+...+|++|+++|++++..++.+|+.++++|++++|+++.+|+.+|.+++++|++|++|+++||||.
T Consensus 321 g~d~g~~~~L~~Y~~~R~~~~~~~~~~~d~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lK~~~~~~a~Gl~ 391 (403)
T PRK07333 321 GLDIGSLDVLERYQRWRRFDTVAMGVTTDVLNKLFSNDSTLLRSVRDIGLGLVDRLPPLKSFFIRQAAGLT 391 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 99965299999999998999999999999999998799679999999999998529999999999965889
No 10
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=100.00 E-value=0 Score=576.57 Aligned_cols=372 Identities=30% Similarity=0.424 Sum_probs=352.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CEEEEEECCC------CCC--CCCEEEECHHHHHHHHHCC-----CHHHHHHC
Q ss_conf 2999979089999999999789-----8599982885------555--7836888788999999889-----94788860
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-----FLTALVSPRS------FLQ--DLRTTMLMGEGIDFLKEIN-----VWDFLQDI 66 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-----~~v~iiE~~~------~~~--~~r~~~l~~~s~~~L~~lG-----l~~~l~~~ 66 (384)
||+|||||++|+++|++|.+.+ ++|.|||+.+ ... |.|+++|+..|..+|++|| +|+.++..
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~~~~~~~~fkD~R~~AlS~GS~~~L~~lGllqPh~W~~l~~~ 80 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPSAAKQPGFFKDARSLALSYGSKQILEKLGLLQPHLWPKLAPF 80 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 97888565899999999850677557615898656574424686423565046876899999985386331257886013
Q ss_pred -CCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC-CEEEEEECCCCEE-----
Q ss_conf -471234189942576554544434502228753120111000000001236647983234-2056530268717-----
Q gi|254780842|r 67 -AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCF-DALANEIQIGEEE----- 139 (384)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~-~~~v~~i~~~~~~----- 139 (384)
++|+.+|++.|.+... ...+++++++.+.+||||+..++-++|.+++.+...+.++ ..++.+++.+.++
T Consensus 81 ratpI~~IhVSD~g~fG----~~~~~~~~~~~~aLGyVV~~~~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveql 156 (425)
T TIGR01984 81 RATPIKDIHVSDQGHFG----ATELRASEFGLPALGYVVELADLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQL 156 (425)
T ss_pred CCCCCCEEEEEECCCEE----EEEECHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECC
T ss_conf 67877516886458300----13412536287645314217899999999986256651125753211210578630005
Q ss_pred ---------EEEEC-CCCC----EEEEEEEEEECC-----CCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCCCEEEEE
Q ss_conf ---------89830-2320----121112353037-----5432000378733222-24304787641147886117887
Q gi|254780842|r 140 ---------VTILL-STGQ----QIVGQFLIGSDG-----RNSSVRRQMGYGENKW-SYPQKALVLNFQHSMPHNGRCVE 199 (384)
Q Consensus 140 ---------v~v~~-~dg~----~i~adlvVgADG-----~~S~vR~~l~~~~~~~-~y~~~~l~~~~~~~~~~~~~a~~ 199 (384)
++|++ ++++ +++|+|||+||| .+|.||+.++++.+.. +|+|+|++++|+++.||+++|||
T Consensus 157 PradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADGGlfdd~~S~~r~~~~i~~~~~R~y~QtAlian~~~~~pH~~~A~E 236 (425)
T TIGR01984 157 PRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADGGLFDDANSKVRELLSIATEEHRDYEQTALIANVRVEQPHQGCAFE 236 (425)
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 66665510357888308875640555308898558633135678899638981786062003301231003575760684
Q ss_pred ECCCCCCCCCCCCCCC--CEEEEEEECHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEEECCCCCCCHHHHHC
Q ss_conf 2278754210001232--0112675075673245532234678877630-675467621110223202233430456537
Q gi|254780842|r 200 FHKSLGTITQIPLREN--FSSLVWIMESQEADFYYKLPVNEIARRLEQY-LYPVIGKIEVVTDVQIFQLSGMISHCFGKK 276 (384)
Q Consensus 200 ~f~~~G~~a~lP~~~~--~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~ 276 (384)
+|++.||+|+||+.|+ .+|+||+.++++++.+.++++++|..+|++. |++.+|++..+++++.|||....+++.+++
T Consensus 237 RFt~~GPlALLP~~d~q~~~slvWc~~~~~a~~~~~L~~~eFl~~Lq~~nFG~rlG~~~~~G~r~~yPL~l~~a~~~v~~ 316 (425)
T TIGR01984 237 RFTPHGPLALLPLKDNQYRLSLVWCLPKEQAERLANLSDAEFLAELQQANFGWRLGKITQVGERKAYPLKLVIAEEQVSH 316 (425)
T ss_pred EECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
T ss_conf 44777780234678999723889718978999986689889999986512225420574327510043667862101467
Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9421011001138445653211212389999998525-----79907999999998679999999999999998636798
Q gi|254780842|r 277 RVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE-----HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYP 351 (384)
Q Consensus 277 rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~-----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 351 (384)
||||||||||++||++|||+|+||+|+..|++.|... +.+..+.|++|+++|+.+...++..|+.|.++|+|+.+
T Consensus 317 R~vliGNAAqTlHPIAGQGfNLGlRDv~~L~~~l~~~~~~~~D~G~~~~L~~Y~~~R~~D~~~t~~lT~~L~~~FsN~~~ 396 (425)
T TIGR01984 317 RVVLIGNAAQTLHPIAGQGFNLGLRDVLTLAEVLIDAREQGKDLGEYALLQEYLRRRQFDRATTIGLTDGLVRLFSNQIP 396 (425)
T ss_pred CEEEEECCHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 27998651333301455301632899999999988676436888897899999987687789998887877765200348
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 99999999999985083789999998619
Q gi|254780842|r 352 LLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 352 ~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
+++.+|++||.+++.+||+|++|+++|||
T Consensus 397 ~l~~~R~LGL~~~~~~pplK~~~~~~aMG 425 (425)
T TIGR01984 397 LLRALRNLGLLALENLPPLKKRLARQAMG 425 (425)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_conf 99985558999973020468999986349
No 11
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=0 Score=561.67 Aligned_cols=378 Identities=26% Similarity=0.422 Sum_probs=342.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------CCCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCCCCE
Q ss_conf 9700299997908999999999978985999828855------5578368887889999998899478886-04712341
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF------LQDLRTTMLMGEGIDFLKEINVWDFLQD-IAEPVSSF 73 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~------~~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~~~~~~ 73 (384)
|++|||+||||||+||++|+.|++.|++|+|+|++.+ .++.|+.+|++.+.++|+++|+|+.+.. ...|+..+
T Consensus 2 ~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~d~R~~al~~~s~~~L~~lG~~~~i~~~~~~p~~~~ 81 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELPDVRVSALSRASEHILRNVGAWQGIEARRAAPYTAM 81 (405)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEE
T ss_conf 99876899991589999999998589978999379986344678986588878999999998798555676237851258
Q ss_pred EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 8994257655454443450222875312011100000000123664798323-420565302687178983023201211
Q gi|254780842|r 74 RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQIVG 152 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~i~a 152 (384)
++++... .....|+..+.+.+.+||++++..+...|++.+.+.+++.+ .+.+++.++.+++++++++++|+++++
T Consensus 82 ~v~~~~~----~~~i~~~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~g~~i~a 157 (405)
T PRK08850 82 EVWEQDS----FARIEFDAESMAQPDLGHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA 157 (405)
T ss_pred EEEECCC----CCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 9984798----743124744417854212464499999999999738991997375355676179715999779988875
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC-CCEEEEEEECHHHHHHH
Q ss_conf 12353037543200037873322224304787641147886117887227875421000123-20112675075673245
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRE-NFSSLVWIMESQEADFY 231 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~-~~~~ivw~~~~~~~~~~ 231 (384)
+|||||||++|.||+++|++..+++|+|++++++++++.+|.+.++|+|++.||++++|+++ +.++++|+.+++..+.+
T Consensus 158 ~llVgaDG~~S~vR~~lgi~~~~~~y~~~~lv~~v~~~~~~~~~a~q~f~~~Gp~a~lPl~~~~~~~ivw~~~~~~~~~l 237 (405)
T PRK08850 158 KLVVGADGANSWVRRQLDIPLTHWDYGHSALVANVRTVEPHNSVARQIFTPQGPLAFLPLSEPNLSSIVWSTEPLRAEAL 237 (405)
T ss_pred EEEEEECCCCHHHHHHCCCCEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCHHHHHHH
T ss_conf 08999169873789972963334676616999999716777760489987999879987589987999982586668887
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53223467887763067546762111022320223343045653794210110011384456532112123899999985
Q gi|254780842|r 232 YKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQ 311 (384)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~ 311 (384)
.+.++++|.+.+...++..++.++.++++..||+....+++|.++||+|+|||||+|||++|||+|+||+||.+|+|+|.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~fpl~~~~a~~~~~~rv~LiGDAAH~~~P~aGQG~Nlgi~Da~~La~kL~ 317 (405)
T PRK08850 238 VAMSDEEFNKQLTAAFDNRLGLCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEIL 317 (405)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 62999999999998741205523885232130166642677741781773435640795121625057889999999999
Q ss_pred CCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 257-----99079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 312 SEH-----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 312 ~~~-----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
+.. .+...+|++||++|++++..++.+|+.++++|.+++|+++.+|+.+|.+++++|++|++|+++||||.
T Consensus 318 ~~~~~g~d~g~~~~L~~Y~~~R~~~~~~~~~~td~l~~lf~~~~p~~~~~R~~gl~~~~~~~~lK~~~~~~a~Gl~ 393 (405)
T PRK08850 318 ALWQQGKDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLS 393 (405)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 9986499976599999999999999999999999999998799769999999999998428999999999966899
No 12
>PRK08774 consensus
Probab=100.00 E-value=0 Score=560.99 Aligned_cols=379 Identities=23% Similarity=0.322 Sum_probs=340.8
Q ss_pred CCE-EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEE
Q ss_conf 970-02999979089999999999789859998288555-----578368887889999998899478886047123418
Q gi|254780842|r 1 MNH-FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-----QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFR 74 (384)
Q Consensus 1 M~~-~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-----~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~ 74 (384)
|++ |||+||||||+|+++|+.|++.|++|+|+|+.+.. .|.|+++|++.|+++|+++|+|+.+...+.|+..++
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~~~~~~~~~d~R~~al~~~s~~~L~~lGv~~~l~~~~~pi~~i~ 80 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATPAGAPPAVFDQRNLSFAAATVNALGALGVMAKLRSAPGPIRRIH 80 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCEEEEE
T ss_conf 98998789999169999999999668997899937998888667873167737999999998898687664056517999
Q ss_pred EEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEE---ECCCCEEEEEECCCCC-E
Q ss_conf 994257655454443450222875312011100000000123664798323-4205653---0268717898302320-1
Q gi|254780842|r 75 LVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANE---IQIGEEEVTILLSTGQ-Q 149 (384)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~---i~~~~~~v~v~~~dg~-~ 149 (384)
+++..+. ....+++.+.+.+.+|+++.+..+.+.|.+.+.+.+.+.. .+.++.+ +..+.+.+++.+.||+ +
T Consensus 81 v~~~~~~----~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ 156 (402)
T PRK08774 81 VSRAGDF----GRVQLDAADYGRDAFGQVVVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATADGEQL 156 (402)
T ss_pred EEECCCC----CEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECCCCEE
T ss_conf 8507877----556536776088764320016999999999998578948982228999999536861699993799579
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf 21112353037543200037873322224304787641147886117887227875421000123201126750756732
Q gi|254780842|r 150 IVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEAD 229 (384)
Q Consensus 150 i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~ 229 (384)
++++|||||||++|.||+++|++..+++|.|++++++++++.+|++++||+|++.||+|++|++++++++||+.+..+++
T Consensus 157 i~a~llVgADG~~S~vR~~~gi~~~~~~y~q~aiv~~v~~~~~~~~~a~q~F~~~Gp~alLP~~~~~~~~v~~~~~~~~~ 236 (402)
T PRK08774 157 VRARLVVGADGSHSAVRELLHIGTDQHDFLQTLFVARVRASRPPDGTAWERFGEHGPTALLPRGDRHYGAIHCVARAEAE 236 (402)
T ss_pred EEECEEEECCCCCCCCHHHCCCCCEECCCCCEEEEEEEEECCCCCCEEEEECCCCCCEEEEECCCCCEEEEEECCHHHHH
T ss_conf 83059999589984523124889630467736999988504788875799748999789988699865689933542077
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 45532234678877630675467621110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 230 FYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
.+..+++++|..++++.+++.++.+...+++..||+...++++|+++||+|+|||||++||++|||+|+||+||.+|+|+
T Consensus 237 ~~~~l~~~~~~~~l~~~~~~~~g~~~~~~~~~~fpL~~~~a~~~~~~Rv~L~GDAAH~~hP~aGQGlNlGi~Da~~La~~ 316 (402)
T PRK08774 237 TVAALDDAGWLARLQRAAGWRAGRFIASGERSAYPLVQVLANSLIAERVVLLGNAAQTLHPIGAQGFNLGLRDALTLAEL 316 (402)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCEEEECCCEECHHHHHHHHHHHCCCCEEEECHHHCCCCCHHCHHHHHHHHHHHHHHH
T ss_conf 77547938999999997464576579932431435787657777258837984165448961302152569999999999
Q ss_pred HHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf 8525--7990799999999867999999999999999863679899999999999985083789999998619888
Q gi|254780842|r 310 FQSE--HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLRD 383 (384)
Q Consensus 310 l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~~ 383 (384)
|... ......+|++|+++|++++..++.+|+.|+++|++++|+++.+|+++|.+++++||+|++|+++|||++.
T Consensus 317 L~~~~~~~g~~~lL~~Y~~eRr~~~~~~~~~t~~l~~lf~~~~~~l~~~R~~gl~~~~~~~~lK~~l~~~a~G~~~ 392 (402)
T PRK08774 317 IEHDHSDAGAGALLAEYLARRRVDREHTIGFSSGLARLTSNPAPLLRPLRSLGLLATSQAAPLQSMLVGGAMGFRG 392 (402)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf 9874238776999999999999999999999999999987997389999999999985389999999998568899
No 13
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=0 Score=563.28 Aligned_cols=377 Identities=24% Similarity=0.404 Sum_probs=343.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC------CCCCEEEECHHHHHHHHHCCCHHHHHH-CCCCCCCE
Q ss_conf 97002999979089999999999789859998288555------578368887889999998899478886-04712341
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL------QDLRTTMLMGEGIDFLKEINVWDFLQD-IAEPVSSF 73 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~------~~~r~~~l~~~s~~~L~~lGl~~~l~~-~~~~~~~~ 73 (384)
+++|||+||||||+|+++|+.|++.|++|+|+|+++.+ .+.|+.+|+++++++|+++|+|+.+.. ...|+..+
T Consensus 4 ~~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~p~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARVQPYRRM 83 (392)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEE
T ss_conf 99998899990699999999998669978999178987555688873699998899999998798166775167731358
Q ss_pred EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 89942576554544434502228753120111000000001236647983234205653026871789830232012111
Q gi|254780842|r 74 RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQ 153 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~ad 153 (384)
++++.... ....|+..+.+.+.++|++++..|.+.|++++.+.+....++.++++++.+.++++++++||++++++
T Consensus 84 ~v~d~~~~----~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~~i~a~ 159 (392)
T PRK08773 84 RVWDAGGG----GELGFDADTLGREQLGWIVENDLLVDRLWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGSRLEAA 159 (392)
T ss_pred EEEECCCC----CEEEECHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 99845898----34753656628545653225499999999998608998974868999996698589997799799988
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 23530375432000378733222243047876411478861178872278754210001232011267507567324553
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYK 233 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~ 233 (384)
|||||||++|.||+.+|++..+++|.|.++++.++++.|+.+.++|+|.+.||++++|++++++++||+.+..+.+.+..
T Consensus 160 lvVgaDG~~S~vR~~~gi~~~~~~y~q~~lv~~v~~~~~~~~~a~~~f~~~Gp~a~lP~~~~~~~~vw~~~~~~~~~~~~ 239 (392)
T PRK08773 160 LAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLTTGPLAFLPFADGRSSIVWTLPDAEAERVLA 239 (392)
T ss_pred EEEECCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEECCHHHHHHHHC
T ss_conf 99983788747677418885358865069999997057776157999618996799876999779999778366787754
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22346788776306754676211102232022334304565379421011001138445653211212389999998525
Q gi|254780842|r 234 LPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE 313 (384)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~ 313 (384)
.++++|.+++.+.+++.++.++.++++..||+....+++|+++|++|+|||||+|||++|||+|+||+||.+|+++|.+.
T Consensus 240 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~aGQG~Nlgl~Da~~L~~~L~~a 319 (392)
T PRK08773 240 LDDADFSRELTQAFAARLGEVRVASPRTAFPLQRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVREA 319 (392)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCEECCHHHHHHHHHCCCCEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99689999999986200464167404222217765533413786899610442779641553405599999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 7-----9907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r 314 H-----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 314 ~-----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
. ......|++|+++|++++..++..|+.++++|++++|+++.+|+.+|.+++++||||++|+++|||+
T Consensus 320 ~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~d~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~G~ 392 (392)
T PRK08773 320 HARRADWAAPHRLQRWARTRRSENTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV 392 (392)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
T ss_conf 8539985569999999999999999999999999999879967999999999999853889999999985699
No 14
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=559.41 Aligned_cols=378 Identities=23% Similarity=0.392 Sum_probs=342.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------CCCCCEEEECHHHHHHHHHCCCHHHHHHCC-CCCCCE
Q ss_conf 9700299997908999999999978985999828855------557836888788999999889947888604-712341
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF------LQDLRTTMLMGEGIDFLKEINVWDFLQDIA-EPVSSF 73 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~------~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~-~~~~~~ 73 (384)
|.+|||+||||||+||++|+.|++.|++|+|+|+++. ..+.|+++|+++++++|+++|+|+.+.... .++..+
T Consensus 1 Mm~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~~s~~~L~~lG~~~~l~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEAEISPLRDA 80 (392)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEE
T ss_conf 99899999992589999999998689989999089853345778886289868999999998789667775076741468
Q ss_pred EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 899425765545444345022287531201110000000012366479832-3420565302687178983023201211
Q gi|254780842|r 74 RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLSTGQQIVG 152 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~dg~~i~a 152 (384)
++++... .....|+..+.+.+++||++++..+.+.|++.+.+.+++. .++.+++++++++++++++++||+++++
T Consensus 81 ~~~~~~~----~~~l~~~~~~~~~~~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g~~i~a 156 (392)
T PRK09126 81 KVLNGRS----PFALTFDARGTGADALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANGRRLTA 156 (392)
T ss_pred EEECCCC----CEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 9952887----504750475567666500021999999999999858996998698889999759805999858988887
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 12353037543200037873322224304787641147886117887227875421000123201126750756732455
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYY 232 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~ 232 (384)
+|||||||++|.||+++|++...++|+|+++++.+.++.+|.+.++|+|.+.|+++++|+++++++++|+.++++.+.+.
T Consensus 157 ~llVgADG~~S~vR~~lgi~~~~~~~~~~~~v~~~~~~~~~~~~a~~~f~~~~~~a~lP~~~~~~~~v~~~~~~~~~~~~ 236 (392)
T PRK09126 157 RLLVAADSRFSATRRQLGIGAQMHDFGRTMLVCRMRHELPHHHTAWEWFGYGRTLALLPLNGGLSSLVLTLPPDQIEALL 236 (392)
T ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECHHHHHHHH
T ss_conf 79998068886111037778623414626999998604787504899964999679996499927999982715589887
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32234678877630675467621110223202233430456537942101100113844565321121238999999852
Q gi|254780842|r 233 KLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQS 312 (384)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~ 312 (384)
+.+++++.+.+.+.+++.++.+..++.+..||+...++++|+++||+|+|||||+|||++|||+|+||+||.+|+++|.+
T Consensus 237 ~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~GQG~Nlgl~Da~~La~~L~~ 316 (392)
T PRK09126 237 ALDPEAFAAEVTAQFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLASQDILAKLILE 316 (392)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCEECCCCEECCHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 09999999999986420136432403312241354225565247858987032137974146275789999999999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 57-----99079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 313 EH-----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 313 ~~-----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
.. .+.+.+|++|+++|++++..++..|+.++++|++++|+++.+|+.+|++++++||+|++|++||||=+
T Consensus 317 ~~~~~~d~g~~~~L~~Y~~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~~~g~~ 391 (392)
T PRK09126 317 AAARGQDIGAASLLERYERKHRLATRPLYHATNAIVALYTDDRPPARLLRRAVLRAANRLAPLKALITAQLTQRK 391 (392)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
T ss_conf 985389977699999999999999999999999999998799679999999999998408889999999973899
No 15
>PRK07608 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=557.36 Aligned_cols=374 Identities=26% Similarity=0.410 Sum_probs=339.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCC
Q ss_conf 970029999790899999999997898599982885555-------783688878899999988994788860-471234
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------DLRTTMLMGEGIDFLKEINVWDFLQDI-AEPVSS 72 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------~~r~~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~ 72 (384)
|| |||+||||||+||++|+.|++.|++|+|+|+++... +.|+.+|+|+++++|+++|+|+.+... ..|+..
T Consensus 4 m~-~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGv~~~l~~~~~~p~~~ 82 (389)
T PRK07608 4 MK-FDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD 82 (389)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCEEEE
T ss_conf 99-98899990689999999998379988999589987666666767517898899999999879854555432640678
Q ss_pred EEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEE
Q ss_conf 18994257655454443450222875312011100000000123664798323420565302687178983023201211
Q gi|254780842|r 73 FRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVG 152 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~a 152 (384)
++++... .....|+..+.+.+.++|++++..|++.|.+.+...+++.+++.++++++.++++++++++||+++++
T Consensus 83 ~~~~~~~-----~~~~~~~~~~~~~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~~g~~i~a 157 (389)
T PRK07608 83 MRVYGDA-----HGRLHFSAYQAAVPQLAWIVESSLIERALDAALRFQGNLTWFDARAQGLDVTPDAATLTLSDGQVLEA 157 (389)
T ss_pred EEEECCC-----CCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEECCCCEEEE
T ss_conf 9996477-----85463463335898414441079999999999861898699887888999729917999889989996
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 12353037543200037873322224304787641147886117887227875421000123201126750756732455
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYY 232 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~ 232 (384)
||||||||++|.||+.+|++...++|.|++++++++++.+|.+.++|+|.+.|+++++|+++++.++||+.+...++.+.
T Consensus 158 ~llVgADG~~S~vR~~~gi~~~~~~y~~~~~v~~~~~~~~~~~~a~~~f~~~g~~a~lP~~~~~~~~vw~~~~~~~~~~~ 237 (389)
T PRK07608 158 DLVVGADGAHSWVRSQAGIKVERRPYRQTGVVANFKAERPHRETAYQWFRDGEILALLPLPDGHVSMVWSARTAHADELL 237 (389)
T ss_pred EEEEEECCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCHHHHHHHH
T ss_conf 58999669976888741888766210314899999723776425799961897279987699738999806803367775
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32234678877630675467621110223202233430456537942101100113844565321121238999999852
Q gi|254780842|r 233 KLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQS 312 (384)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~ 312 (384)
..+++++.+.+.+.++..++.++.+++...||+....+++|.++||+|+|||||+|||++|||+|+||+||.+|+++|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~rv~LiGDAAH~~~P~~GQG~N~gi~Da~~La~~L~~ 317 (389)
T PRK07608 238 ALSPAQLAAEVERAAGGRLGALRCVTPAAGFPLALQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAG 317 (389)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHCCCEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 09999999999986234456515642443440765525664126525651402057964033386889999999999862
Q ss_pred CC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 57----990799999999867999999999999999863679899999999999985083789999998619
Q gi|254780842|r 313 EH----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 313 ~~----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
.. .....+|++||++|++++..++..|+.++++|++++|+++.+|+.+|++++++|++|++|+++|||
T Consensus 318 ~~~~~~~g~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~G 389 (389)
T PRK07608 318 REPFRDLGDLRLLRRYERARREDILALMVATDGLQRLFGLPGALARWVRNAGMALVGAQPLVKRWLVRAALG 389 (389)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 635788551999999999999999999999999999987996799999999999984199999999997479
No 16
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=551.95 Aligned_cols=376 Identities=26% Similarity=0.414 Sum_probs=341.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 002999979089999999999789859998288555---57836888788999999889947888604712341899425
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL---QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~---~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
+|||+||||||+||++|+.|++.|++|+|+|+++.. ...|+++|+++++++|+++|+|+.+.+.+.|+..+++++..
T Consensus 17 d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~~ra~~l~~~s~~iL~~lGl~~~i~~~~~~~~~i~~~~~~ 96 (413)
T PRK07364 17 DYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAKGQAYALSLLSARIFEGIGVWEKILPHIGPFRQIQLSDAD 96 (413)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 89989999279999999999868998899917997666788738995899999999879968988614754259998189
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCC---CEEEEEEE
Q ss_conf 7655454443450222875312011100000000123664798323-4205653026871789830232---01211123
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTG---QQIVGQFL 155 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg---~~i~adlv 155 (384)
.. ....|...+.+.+.++|++++..+.+.|++.+.+.+++.+ ++.++++++.++++++++++++ ++++++||
T Consensus 97 ~~----~~~~~~~~~~~~~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~a~ll 172 (413)
T PRK07364 97 FP----GVVRFSPEDLGTEALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQSKLV 172 (413)
T ss_pred CC----CEEEECHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEEEEEEE
T ss_conf 87----46751655438875423300299999999999848994898287799999769836999982991389985689
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHH
Q ss_conf 53037543200037873322224304787641147886117887227875421000123201126750756732455322
Q gi|254780842|r 156 IGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLP 235 (384)
Q Consensus 156 VgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~ 235 (384)
|||||++|.||+++|++..+++|.|.++++.+.++.++.+.++|+|++.||++++|+++++++++|+.+.+..+.+..++
T Consensus 173 IgaDG~~S~VR~~lgi~~~g~~y~q~~~~~~v~~~~~~~~~~~~~f~~~g~~a~lPl~~~~~~ivw~~~~~~~~~~~~~~ 252 (413)
T PRK07364 173 VAADGARSPIRQAAGIKTDGWKYWQSCVTATVKPEAPHNDVAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALP 252 (413)
T ss_pred EEECCCCCHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEECCCHHHHHHHCCC
T ss_conf 99318885003540687656886606999863145776531489860899769987699807999976714257675099
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 3467887763067546762111022320223343045653794210110011384456532112123899999985257-
Q gi|254780842|r 236 VNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEH- 314 (384)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~- 314 (384)
++++.+++++.+++.++.++.++++..||+....+++|+++||+|+|||||+|||++|||+|+||+||.+|+|+|.+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~GQG~Nlgi~Da~~La~~L~~a~~ 332 (413)
T PRK07364 253 EAEFLAELQQRTGDQLGKLELLGDRFVFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLLEAHQ 332 (413)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999987465454158941542040877535776347723532044328973046131579999999999999986
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf ----99079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 315 ----MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 315 ----~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
.+...+|++|+++|++++..++..|+.++++|++++++++.+|+.+|.+++++|++|++++++||||+
T Consensus 333 ~~~d~g~~~~L~~Y~~~R~~~~~~~~~~t~~l~~lf~~~~~~~~~~R~~gl~~~~~~~~lk~~~~~~a~G~~ 404 (413)
T PRK07364 333 RGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNHWWPLVVVRRLGLWLLRHVPPLKRLALKLMTGLK 404 (413)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 399976699999999998899999999999999998699659999999999998648899999999966889
No 17
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=535.65 Aligned_cols=372 Identities=24% Similarity=0.325 Sum_probs=331.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC----CCEEEEEECCC---CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 00299997908999999999978----98599982885---555783688878899999988994788860471234189
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK----GFLTALVSPRS---FLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~----g~~v~iiE~~~---~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
+|||+||||||+|+++|+.|++. |++|.++|+.+ ...+.|+++|++.++++|+++|+|+. .+.++..+++
T Consensus 11 d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~Ra~al~~~s~~~L~~lG~w~~---~~~~i~~~~v 87 (397)
T PRK06996 11 DYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIEHIHV 87 (397)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCC---CCCCEEEEEE
T ss_conf 9888999927999999999960168789669997689866678999399975789999998799845---6874259999
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCC--C-CEEEE
Q ss_conf 94257655454443450222875312011100000000123664798323420565302687178983023--2-01211
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLST--G-QQIVG 152 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~d--g-~~i~a 152 (384)
++ ... .....++..+.+.+.+||++++..|.+.|.+.+.+.+.....+..+..+.++.+++++++.+ | ++++|
T Consensus 88 ~~---~~~-~g~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a 163 (397)
T PRK06996 88 SQ---RGH-FGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQGARTLRA 163 (397)
T ss_pred EE---CCC-CCCEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEEEE
T ss_conf 40---577-66211265442885223544379999999999974898798344514577636745899605998659981
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCC---EEEEEEECHHHHH
Q ss_conf 1235303754320003787332222430478764114788611788722787542100012320---1126750756732
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENF---SSLVWIMESQEAD 229 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~---~~ivw~~~~~~~~ 229 (384)
+|||||||.+|.+|+.++++..+++|+|++++++++++.||++++||+|++.||+++||++++. +++||+.+++++.
T Consensus 164 ~llVgaDG~~S~vR~~~gi~~~~~~y~q~alv~~v~~~~~~~~~A~q~F~~~GplalLPl~~~~~~~~s~Vws~~~~~a~ 243 (397)
T PRK06996 164 RIAVQAEGGLFHDQKAKAGKSARRDYGQTALVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAA 243 (397)
T ss_pred CEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEECCHHHHH
T ss_conf 89999599981888863899856667625999865404799985899844998789987789998857999935878899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 45532234678877630675467621110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 230 FYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
.+.++++++|.+++.+.++..++.+..++++..||+....+++|+++||+|+|||||.+||++|||+|+||+||.+|+|+
T Consensus 244 ~~~~l~~~~~~~~l~~~~~~~lg~~~~~~~~~~fpl~~~~a~~~~~~Rv~L~GDAAH~~hP~aGQGlNlGirDa~~La~~ 323 (397)
T PRK06996 244 RRAALPDDAFLRELGAAFGTRMGRFTAIAGRHAFPLGLNAAHTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADA 323 (397)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCEEEECCCEECCCHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88659999999999988555156669932631352088888997528846872155448982114141309999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCC
Q ss_conf 8525799079999999986799999999999999986367989999999999998508378999999861-988
Q gi|254780842|r 310 FQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSL-FLR 382 (384)
Q Consensus 310 l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~-gl~ 382 (384)
|.+.. ..+..|++|+++|++++..++.+|+.++++|++++++++.+|+.+|..++++||+|++|++|+| |=|
T Consensus 324 L~~~~-~~~~~L~~Y~~~Rr~~~~~~~~~td~l~~lf~~~~~~~~~lR~~gl~~~~~~~plk~~l~~~~m~g~~ 396 (397)
T PRK06996 324 LSAQG-ATPLALATFAARRALDRRVTIGATDLLPRLFTVDLAPLAHLRGAALTALEFVPPLKHALARQMMFGQR 396 (397)
T ss_pred HHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCC
T ss_conf 98626-89899999999989999999999999999987996799999999999985588999999998736787
No 18
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=0 Score=538.14 Aligned_cols=366 Identities=27% Similarity=0.430 Sum_probs=323.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-----CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 0299997908999999999978985999828855-----55783688878899999988994788860471234189942
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-----LQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-----~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
.||+||||||+|+++|+.|++.|++|+|+|+++. ..|.|+++|+|+++++|+.+|+|+.+.....|+..+++++.
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~~~~~~~~~d~R~~als~~s~~~L~~lgiw~~l~~~~~~~~~i~v~d~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDVYVVDN 81 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCEEEEEECC
T ss_conf 62999996699999999998579969999789978866579963467469899999986984867886423189999758
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC-CEEEEEECCCCEEEEEECCCCCEEEEEEEEE
Q ss_conf 576554544434502228753120111000000001236647983234-2056530268717898302320121112353
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCF-DALANEIQIGEEEVTILLSTGQQIVGQFLIG 157 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~-~~~v~~i~~~~~~v~v~~~dg~~i~adlvVg 157 (384)
..... . +..+.+.+.+||+|++.+|.+.|++++.+.+.+.+. +..+..+...++...+.+ ++++++++++||
T Consensus 82 ~~~~~----~--~~~~~~~~~lgyii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~llIg 154 (374)
T PRK06617 82 KASEI----L--DLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKF-DDKQIKCNLLII 154 (374)
T ss_pred CCCCE----E--ECCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCEEEEC-CCCEEEEEEEEE
T ss_conf 98853----6--4245676543465213899999999996499948975751146652788269963-896785358999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC-CEEEEEEECHHHHHHHHHHHH
Q ss_conf 0375432000378733222243047876411478861178872278754210001232-011267507567324553223
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLREN-FSSLVWIMESQEADFYYKLPV 236 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~-~~~ivw~~~~~~~~~~~~~~~ 236 (384)
|||++|.||+.++++...++| |+|++++++++.+|+++++|+|++.||+|+||++++ .+++||+.+.+.++.+.+.+.
T Consensus 155 aDG~~S~vR~~~~~~~~~~~y-q~a~v~~v~~~~~~~~~a~q~F~~~GplAlLPl~~~~~~siVws~~~~~~~~~~~l~~ 233 (374)
T PRK06617 155 CDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPV 233 (374)
T ss_pred ECCCCHHHHHHHCCCCCCCCC-CEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEEECCHHHHHHHHCCCH
T ss_conf 579851668874778514246-3799973201476534025466489977998759998379998277789999974999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 46788776306754676211102232022334304565379421011001138445653211212389999998525799
Q gi|254780842|r 237 NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEHMS 316 (384)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~~~ 316 (384)
+++...++..+++.+++++..+++..||+....+++|+++||+|+|||||++||++|||+|+||+||.+|+++|..
T Consensus 234 ~~~~~~~~~~~~~~lg~i~~~~~~~~fpL~~~~a~~~~~~rv~LiGDAAH~ihP~aGQGlNlgi~Dv~~L~~~l~~---- 309 (374)
T PRK06617 234 EEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYFHNKIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN---- 309 (374)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCEECHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC----
T ss_conf 9999999985343126568833211322067745401267717760034227972126001229999999998625----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 079999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 317 FRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 317 ~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
..+|++|+++|++++..++.+||.++++|++++++++.+|+.+|.+++++||||++++++|||-|
T Consensus 310 -~~~L~~Y~~~R~~d~~~~~~~td~l~~~f~~~~~~~~~~R~~gl~~~~~~~~lK~~~~~~a~G~~ 374 (374)
T PRK06617 310 -NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKAINNFKPIKNLITSYAMGKR 374 (374)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
T ss_conf -66899999999999999999999999998699679999999999998508999999999866999
No 19
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=0 Score=479.33 Aligned_cols=377 Identities=30% Similarity=0.453 Sum_probs=336.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC--CCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 7002999979089999999999789859998288--55557836888788999999889947888604712341899425
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR--SFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~--~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
+.+||+||||||+||++|++|++.|++|+|+|+. ......|+++|+++++++|+++|+++.+...+.+......++..
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECC
T ss_conf 98549999978999999999982899689990776113557559998989999999849907776157886037999659
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECC-CCCEEEEEEEEE
Q ss_conf 765545444345022287531201110000000012366479832-342056530268717898302-320121112353
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLS-TGQQIVGQFLIG 157 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~-dg~~i~adlvVg 157 (384)
+. ....++..+.+...++++++|.+|.+.|.+++.+.+++. +.+..++.++.+++.++++++ ||++++||||||
T Consensus 81 ~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVg 156 (387)
T COG0654 81 GR----RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVG 156 (387)
T ss_pred CC----EEEEECHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEE
T ss_conf 96----38981522168776279988899999999998718982999577799988539737999903991997599998
Q ss_pred ECCCCCCCCCCCCCC-CCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 037543200037873-3222243047876411478861178872278754210001232011267507567324553223
Q gi|254780842|r 158 SDGRNSSVRRQMGYG-ENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPV 236 (384)
Q Consensus 158 ADG~~S~vR~~l~~~-~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~ 236 (384)
|||+||.||+.+++. ....+|.+.++++++.++.++.+.++++|.+.|+++++|++++.++++|+.++...+....++.
T Consensus 157 ADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T COG0654 157 ADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSD 236 (387)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCHHHHHCCCCH
T ss_conf 89987699974698765577555069999703778888716899238976799874889668999913861454023786
Q ss_pred HHHHHHHHHCCCCC--CCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 46788776306754--6762111022320223343045653794210110011384456532112123899999985257
Q gi|254780842|r 237 NEIARRLEQYLYPV--IGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEH 314 (384)
Q Consensus 237 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~ 314 (384)
+++..++...++.. ++.+....+...||+....++.|.++|++|+|||||+|||++|||+|+||+||.+|+++|....
T Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlg~~Da~~La~~L~~~~ 316 (387)
T COG0654 237 EEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAP 316 (387)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCEECCCCCCEECCEECCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999864974335604553532012212412011364888999556676898610457677989999999999754
Q ss_pred C-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
Q ss_conf 9-90-79999999986799999999999999986367989999999999998508378999999861988
Q gi|254780842|r 315 M-SF-RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFLR 382 (384)
Q Consensus 315 ~-~~-~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl~ 382 (384)
. +. .++|+.|+++|++++.+++..++.+.+.|.+++++.+.+|+.+|+++...+++|+.+.++++|+.
T Consensus 317 ~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (387)
T COG0654 317 RPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV 386 (387)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 1685189999999997889999999999988643447617778788898740215014778875420237
No 20
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=100.00 E-value=0 Score=487.56 Aligned_cols=367 Identities=26% Similarity=0.417 Sum_probs=306.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHC----CCEEEEEEC--CCCC-----------CCCCEEEECHHHHHHHHHCCCHHHHHHC
Q ss_conf 0299997908999999999978----985999828--8555-----------5783688878899999988994788860
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKK----GFLTALVSP--RSFL-----------QDLRTTMLMGEGIDFLKEINVWDFLQDI 66 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~----g~~v~iiE~--~~~~-----------~~~r~~~l~~~s~~~L~~lGl~~~l~~~ 66 (384)
|||+||||||+|+++|++|+.. ..+|.++|- .+.. .+.|+.+|+|+|+.+|+++|.|+.+...
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~~d~p~l~s~~y~~~~~~y~NRvssitp~si~~f~~~GAWd~i~~~ 80 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDAVDAPKLKSRKYEKPDGPYSNRVSSITPASIEFFKKIGAWDHIESD 80 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCHHHHHHHH
T ss_conf 92898888578999999973187320230678652348234211015788887763585375079998534835898851
Q ss_pred -CCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCC--CCCC-CCEEEEE--E-------
Q ss_conf -4712341899425765545444345022287531201110000000012366479--8323-4205653--0-------
Q gi|254780842|r 67 -AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDP--LIHC-FDALANE--I------- 133 (384)
Q Consensus 67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~--~~~~-~~~~v~~--i------- 133 (384)
..++.++.+||.. +...+.|...+. .+.++||||+..|+.+|++.+.+.. ++.. ...++.. +
T Consensus 81 R~~~f~~~~V~D~~----s~a~i~f~~~~~-~e~~aciiEN~~i~~sL~~~l~~~~~~~~~~~~~~~~~~~~ip~~srqa 155 (481)
T TIGR01989 81 RIKPFKRMQVWDGC----SKALIEFDRDNV-KEDMACIIENDVIQASLYNRLKEYKSDNVKVLYKAKLISVTIPKKSRQA 155 (481)
T ss_pred HHHHHCCEEEEEEC----CCEEEEECCCCC-CCCCEEHHHHHHHHHHHHHHHHHHCCCCEEECCHHCEEEECCCCCCCCC
T ss_conf 14201718988724----740344423688-8643011356899999999998725882331001010231155101457
Q ss_pred --------------CCCCEEEEEECCCC---------------CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf --------------26871789830232---------------0121112353037543200037873322224304787
Q gi|254780842|r 134 --------------QIGEEEVTILLSTG---------------QQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALV 184 (384)
Q Consensus 134 --------------~~~~~~v~v~~~dg---------------~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~ 184 (384)
....+.+.|+++|| ++++++|+|||||.||.||+..+|+..+|.|+|+++|
T Consensus 156 PtreaissG~p~~~~~~~~~~~i~L~dGdvietsllvrinflk~~l~~~LliGADG~NS~VR~~~~i~~~gwNY~~~avV 235 (481)
T TIGR01989 156 PTREAISSGSPFEENDNSNWVHITLSDGDVIETSLLVRINFLKETLKTKLLIGADGVNSKVRKAANIDVTGWNYDQSAVV 235 (481)
T ss_pred CCCHHHCCCCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCEEE
T ss_conf 53012116888765566764257706886631455556555432000335774327877223362367545335764268
Q ss_pred EEECCCC--CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCC---CCC---C-----
Q ss_conf 6411478--86117887227875421000123201126750756732455322346788776306---754---6-----
Q gi|254780842|r 185 LNFQHSM--PHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIARRLEQYL---YPV---I----- 251 (384)
Q Consensus 185 ~~~~~~~--~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~---~----- 251 (384)
++++++. +...+|||+|+|.||+|+||++|+.+++||+..++.+..+..+++|+|.+.++..| -.. +
T Consensus 236 atl~l~~~~~~n~~AWQRFLP~GPiAlLPl~D~~s~lVWSts~e~a~~L~~Lp~e~FV~~lN~Af~l~~~d~~~~~~~d~ 315 (481)
T TIGR01989 236 ATLKLEEDATENEVAWQRFLPTGPIALLPLSDNLSTLVWSTSPEEAKRLKSLPPEEFVDALNAAFRLDYSDLNYLYLVDE 315 (481)
T ss_pred EEEEECCCCCCCCEEEECCCCCCCEEECCCCCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 88850567888873541337876624457665336541216779999842588357899999874178888873110002
Q ss_pred -CCC-----------------------------------CCC-EEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHH
Q ss_conf -762-----------------------------------111-0223202233430456537942101100113844565
Q gi|254780842|r 252 -GKI-----------------------------------EVV-TDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQ 294 (384)
Q Consensus 252 -~~~-----------------------------------~~~-~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~Gq 294 (384)
|.+ +.+ ..+..|||...+++.|++.|++|||||||.+||+|||
T Consensus 316 ~Gsm~~~~L~~~~~~~~~~~yatL~~~~~~~~~~PP~v~~v~~ksRa~FPL~L~Ha~~Yv~~R~ALvGDAAH~vHPLAGQ 395 (481)
T TIGR01989 316 AGSMDVEKLNEDIGFRTEEIYATLKVGRKSEVQVPPRVIGVVDKSRAAFPLGLGHADEYVTERVALVGDAAHRVHPLAGQ 395 (481)
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCEECCHHHCCCCCCCC
T ss_conf 25620899997413530142011103531340168858998237503687421220777528962622301067873345
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf 3211212389999998525799079-----99999998679999999999999998636798999999999999850837
Q gi|254780842|r 295 GLNLSMRDVIILLNLFQSEHMSFRA-----IGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTP 369 (384)
Q Consensus 295 G~n~ai~Da~~L~~~l~~~~~~~~~-----~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~ 369 (384)
|+|||+.|+..|++.|..+-..+.+ -|+.|+++|+.++..++..+|.|.++++.++|++..+|.+||.+.++++|
T Consensus 396 GvNlG~~Dv~~L~~~L~~a~~~G~DiGs~~~L~~Y~~~r~~~N~~~l~~~D~l~kLY~t~~ppvv~lRt~GL~l~~~~~P 475 (481)
T TIGR01989 396 GVNLGFSDVESLVKALSKAVKEGADIGSVSSLKPYERERQAKNVVLLALVDKLHKLYATDFPPVVALRTLGLNLTNKISP 475 (481)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 10111789999999999998605552414520588987866285102235445440102465799999999886403651
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780842|r 370 LRHQVM 375 (384)
Q Consensus 370 lk~~~~ 375 (384)
||+.||
T Consensus 476 lKn~i~ 481 (481)
T TIGR01989 476 LKNFIM 481 (481)
T ss_pred HHHHCC
T ss_conf 122209
No 21
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=0 Score=428.85 Aligned_cols=356 Identities=21% Similarity=0.272 Sum_probs=274.9
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCC-EEEE
Q ss_conf 97--0029999790899999999997898599982885555-783688878899999988994788860471234-1899
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSS-FRLV 76 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~-~~~~ 76 (384)
|+ ++||+||||||+||++|++|+|.|++|+|+|+.+... ..+++.|+|+++++|+++|+|+++...+..... +...
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
T ss_conf 99899858999928899999999986799899990899877778634889999999998869689986078514579995
Q ss_pred ECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEE--EEECCCCCEEEEE
Q ss_conf 425765545444345022287531201110000000012366479832-3420565302687178--9830232012111
Q gi|254780842|r 77 DITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEV--TILLSTGQQIVGQ 153 (384)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v--~v~~~dg~~i~ad 153 (384)
+ .+..... ++........+...+++..|.+.|++++...+.+. .++..+..++++.+++ .++++||+++++|
T Consensus 81 ~-~g~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~ad 155 (388)
T PRK07045 81 H-DKELIAS----LDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPT 155 (388)
T ss_pred C-CCCEEEE----ECCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEE
T ss_conf 0-8957987----4455566668389830999999999997458981999798999999849925999995899799740
Q ss_pred EEEEECCCCCCCCCC-CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCC-CCCCCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 235303754320003-78733222243047876411478861178872278-7542100012320112675075673245
Q gi|254780842|r 154 FLIGSDGRNSSVRRQ-MGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKS-LGTITQIPLRENFSSLVWIMESQEADFY 231 (384)
Q Consensus 154 lvVgADG~~S~vR~~-l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~-~G~~a~lP~~~~~~~ivw~~~~~~~~~~ 231 (384)
+||||||++|.||+. ++++....+|.+..++..+....+.......++.. .|+..++|++++..+++|..+.++...+
T Consensus 156 lvIGADG~~S~vR~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~ 235 (388)
T PRK07045 156 VLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGY 235 (388)
T ss_pred EEEECCCCCCHHHHHHHCCCCCCEECCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEECHHHHHH
T ss_conf 99995688627889872898520123522899999825887763389990799289999759991999999605054442
Q ss_pred H-HHHHHHHHHHHHHCCCCCC----CCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 5-3223467887763067546----7621110223202233430456537942101100113844565321121238999
Q gi|254780842|r 232 Y-KLPVNEIARRLEQYLYPVI----GKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL 306 (384)
Q Consensus 232 ~-~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L 306 (384)
. ..+.+++.+.+.+.+++.. ..+...+.+..||+....+++|.++||+|+|||||+|||++|||+|+||+||++|
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~grvvLiGDAAH~~~P~~GQG~N~aieDA~~L 315 (388)
T PRK07045 236 LADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGEL 315 (388)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEEEEEECHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 04566799999999772720255876516554046624136882131458579996000458985021687899999999
Q ss_pred HHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999852579---9079999999986799999999999999986367989999999999
Q gi|254780842|r 307 LNLFQSEHM---SFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTF 361 (384)
Q Consensus 307 ~~~l~~~~~---~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l 361 (384)
+++|..... ..+++|+.||++|||++.+++..++.+.++|+++||++..+|+...
T Consensus 316 a~~L~~~~~~~~~~~~~L~~Ye~~Rrp~~~~v~~~~~~~~~l~~~~~~l~~~~R~~~~ 373 (388)
T PRK07045 316 GACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQ 373 (388)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999998679977599999999987189999999999999986667537899999987
No 22
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=0 Score=415.78 Aligned_cols=370 Identities=20% Similarity=0.293 Sum_probs=290.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 97002999979089999999999789859998288555-57836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|+.|||+||||||+||++|+.|+++|++|+|+||++.. ...|+..++++++++|+.+|+++.+...+.+...++.++..
T Consensus 10 ~~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~~l~~rtleil~~lGl~~~i~~~~~~~~~~~~~~~~ 89 (554)
T PRK06183 10 AHDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAVGIDDEALRTFQSIGLVDEVLPHTTPNHGMRFLDAK 89 (554)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 89888899995989999999999779999999189998888868998999999999878989998418414318999489
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCC-CCCCCEEEEEECCCCEEEEEECCC---C--CEEEEE
Q ss_conf 7655454443450222875312011100000000123664798-323420565302687178983023---2--012111
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPL-IHCFDALANEIQIGEEEVTILLST---G--QQIVGQ 153 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~-~~~~~~~v~~i~~~~~~v~v~~~d---g--~~i~ad 153 (384)
+...... .....+.+++ ..+.+++..|.+.|.+.+.+.+. ...++++++++++++++|++++.+ | ++++|+
T Consensus 90 g~~~~~~--~~~~~~~~~p-~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ira~ 166 (554)
T PRK06183 90 GRCLADI--APTTDEFGWP-RRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVRAR 166 (554)
T ss_pred CCEEEEE--CCCCCCCCCC-EEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEE
T ss_conf 9789972--6876656877-144610999999999999868998999388999999718842799997799957999976
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 23530375432000378733222243047876411478--8611788722787542100012320112675075673245
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSM--PHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFY 231 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~--~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~ 231 (384)
|||||||++|.||+++|+++.+..|.+.++++++..+. ++....++++.+.++..++|++++...+.+...+.+..
T Consensus 167 ylVGaDGa~S~VR~~lgi~~~g~~~~~~~lv~dv~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~-- 244 (554)
T PRK06183 167 YVVGCDGANSFVRRTLGVSFEGLTFPERWLVVDVANDPLLGLGPHTYQYCDPARPYTSVPGGHGRRRWEFMVLPGETE-- 244 (554)
T ss_pred EEEECCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCH--
T ss_conf 899717887078997499853687770799999852787678972899975999889997689859999995799981--
Q ss_pred HHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 532-2346788776306754676211102232022334304565379421011001138445653211212389999998
Q gi|254780842|r 232 YKL-PVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLF 310 (384)
Q Consensus 232 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l 310 (384)
... +++.+.+.+..+.+. ...++ +.....|++..+++++|.+|||+|+|||||.|+|++|||||+||+||++|+|+|
T Consensus 245 ~~~~~~e~~~~~~~~~~~~-~~~~~-i~~~~~~~~~~rvA~~~~~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKL 322 (554)
T PRK06183 245 EELATPENLRRLLAPWVPD-PDDVE-LIRHAVYTFHARVAERWRSGRVLLAGDAAHLMPPFQGQGMNSGIRDAANLAWKL 322 (554)
T ss_pred HHCCCHHHHHHHHHHHCCC-CCCEE-EEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4428989999999986599-87448-999886004555466523597899760001369864565556377799999999
Q ss_pred HCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 525--7990799999999867999999999999999863679899999999999985083789999998
Q gi|254780842|r 311 QSE--HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQ 377 (384)
Q Consensus 311 ~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~ 377 (384)
... +...+.+|+.|+.||+|....++..+..+..++...++.....|+..+..+...+++++.+...
T Consensus 323 A~V~~G~a~~~LLdtY~~ERrp~a~~~i~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~ 391 (554)
T PRK06183 323 ALVLQGRAGDALLDTYEQERRPHARAMIDLSVTLGRVIAPTDRWAAALRDAVVRLASYVPPVKRYVLEM 391 (554)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 999668998588777799989999999999886300106797788888999987512450256676512
No 23
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=417.85 Aligned_cols=369 Identities=19% Similarity=0.228 Sum_probs=273.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-EEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 970029999790899999999997898599982885555783-6888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLR-TTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r-~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|| |+||||||+||++|+.|+|.|++|+|+|+.+.....+ ++.|.|+++++|+++|+++.+...+.++..++.++..
T Consensus 1 mk---VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~l~~~~~~vl~~lGl~d~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MK---IAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVDFWGVGYEVAKRMGITDQLAEAGYQIEHIRSVGPT 77 (391)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHCCCHHHHHHCCCCCEEEEEECCC
T ss_conf 97---999993289999999998689998999038988877338723839999999879938998527885069999999
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76554544434502228753120111000000001236647983234205653026871789830232012111235303
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSD 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgAD 159 (384)
+...............+.+. ..++|.+|.+.|++.+.. .....++++++++++++++|+++++||++.++|+|||||
T Consensus 78 G~~~~~~~~~~~~~~~~~~~--~~i~R~dL~~~L~~~~~~-~v~v~~g~~v~~i~~~~dgV~v~f~dG~~~~~DlvVGAD 154 (391)
T PRK07588 78 GRVKADLNVDVFRRMVGDDF--TSLPRGDLAATIYTTIEG-QVETIFDDSIATIDEHRDGVRLTLERGTPRDFDLVIGAD 154 (391)
T ss_pred CCEEEECCCHHHCCCCCCCC--EEECHHHHHHHHHHHCCC-CCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECC
T ss_conf 98887437123111347752--145399999999975144-878997999999996299589998799888875999548
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEE--EECCCCCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHH
Q ss_conf 75432000378733222243047876--4114788611788722-78754210001232011267507567324553223
Q gi|254780842|r 160 GRNSSVRRQMGYGENKWSYPQKALVL--NFQHSMPHNGRCVEFH-KSLGTITQIPLRENFSSLVWIMESQEADFYYKLPV 236 (384)
Q Consensus 160 G~~S~vR~~l~~~~~~~~y~~~~l~~--~~~~~~~~~~~a~~~f-~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~ 236 (384)
|+||.||+.+.-+.....+...+.+. .+....+.+...+..| .+++.++.+|+.+++..++|....+.... ..+.
T Consensus 155 Gi~S~vR~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 232 (391)
T PRK07588 155 GLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNTVDKQVARVALRGDRTLFLFIFRAEHDNP--PLTP 232 (391)
T ss_pred CCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCC--CCCH
T ss_conf 76407778744888887430248999998357677777479999869988999982699289999996787788--8881
Q ss_pred HHHHHHHHHCCCC-------CCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4678877630675-------467621110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 237 NEIARRLEQYLYP-------VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 237 ~~~~~~l~~~~~~-------~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
++-.+.+.+.|.+ .+..+...+.....++....+++|+++||+|+|||||+|+|+.|||+|+|||||++|+++
T Consensus 233 ~~~~~~l~~~f~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~W~~GRV~LlGDAAH~~~P~~GqGan~AieDA~vLA~~ 312 (391)
T PRK07588 233 KEEKQLLRDQFGDVGWESRDILAALDDVDDLYFDVVSQIRMDRWSRGRVLLVGDAAACISLLGGEGTGLAITEAYVLAGE 312 (391)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 77999999986444863389997546630025320001324434359889971555667997662387999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 852579907999999998679999999999999998636798999999999999850837899999986
Q gi|254780842|r 310 FQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQS 378 (384)
Q Consensus 310 l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a 378 (384)
|.+...+.+.+|+.||++|||.+..+|.....+.++|..++++..++|+..|+++. .|++++++.++.
T Consensus 313 L~~~~~d~~~Al~~YE~~rrp~v~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (391)
T PRK07588 313 LARAGGDHRRAFDAYEKRLRPFIAGKQASAAKFLWVFASDTIFGKYFSTITMRISN-TPPISKFIGAGI 380 (391)
T ss_pred HHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHCCC
T ss_conf 98748998999999999767899999875651231115998899999999999847-631666750320
No 24
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=413.95 Aligned_cols=350 Identities=19% Similarity=0.267 Sum_probs=264.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 9700299997908999999999978985999828855557-836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|| |+||||||+||++|+.|+|.|++|+|+|+.+.+.. .+++.|+|+++++|+++|+++.+...+.++..+.+++..
T Consensus 1 mk---V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~~~g~gi~l~~~~l~~L~~~gl~~~l~~~~~~~~~~~~~~~~ 77 (373)
T PRK06753 1 MK---IAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVTEIGAGIGIGDNVLKKLGNHDLAKGIKNAGQILSTMNVLDDK 77 (373)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 98---999994589999999999779999998889998877619998899999999879848999607787329999099
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76554544434502228753120111000000001236647983234205653026871789830232012111235303
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSD 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgAD 159 (384)
+...... ........+.++|.+|.+.|++.+.+. ...+++++++++..+++++++++||+++++|+|||||
T Consensus 78 g~~~~~~-------~~~~~~~~~~i~R~~L~~~L~~~~~~~--~i~~~~~~~~i~~~~~~v~v~~~dg~~~~~DlvVGAD 148 (373)
T PRK06753 78 GTLLTKV-------KLKSNTLNVTLPRQTLIDIIKSYVKED--TIFTNHEVTKIENETDKVTIHFAEQESEAFDLCIGAD 148 (373)
T ss_pred CCEEEEE-------ECCCCCCEEEECHHHHHHHHHHHCCCC--EEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECC
T ss_conf 9896762-------047788348980999999998747458--7995889999993099899998799798887999748
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHH-HHHHHHHHHH
Q ss_conf 75432000378733222243047876411-478861178872278754210001232011267507567-3245532234
Q gi|254780842|r 160 GRNSSVRRQMGYGENKWSYPQKALVLNFQ-HSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQE-ADFYYKLPVN 237 (384)
Q Consensus 160 G~~S~vR~~l~~~~~~~~y~~~~l~~~~~-~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~-~~~~~~~~~~ 237 (384)
|+||.||+.++........+.+++...+. .+.++.+.+.++|.+.|+++++|++++.....+.+...+ .........+
T Consensus 149 G~~S~vR~~l~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T PRK06753 149 GIHSVVRQSVNADSKVRYQGYTCFRGLIDDIDLKHPDCAKEYWGRKGRVGIVPLLNNQAYWFITINAKENDPKYSSFGKP 228 (373)
T ss_pred CCCCHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCHH
T ss_conf 87767888636788977757289999961332589763167855997699999139968999998467788222335739
Q ss_pred HHHHHHHHCCCCCCCCC-CCCE--EEEEECCC-CCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67887763067546762-1110--22320223-34304565379421011001138445653211212389999998525
Q gi|254780842|r 238 EIARRLEQYLYPVIGKI-EVVT--DVQIFQLS-GMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE 313 (384)
Q Consensus 238 ~~~~~l~~~~~~~~~~~-~~~~--~~~~~pl~-~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~ 313 (384)
++.+.+..+ ++.+..+ .... ....+++. ....++|+++||+|+|||||+|+|++|||+|+|||||++|+++|.+.
T Consensus 229 ~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~grvvLiGDAAH~m~P~~GQGan~aieDA~~LA~~L~~~ 307 (373)
T PRK06753 229 HLQAYFNHY-PNEVREILDKQSETGILLHDIYDLKPLKSFVYGRTILLGDAAHATTPNMGQGAGQAMEDAIVLVNCFNAY 307 (373)
T ss_pred HHHHHHHHC-CHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999998508-7889999983784561670133454333230585899811235569740001779999999999998606
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 7990799999999867999999999999999863679899999999999985
Q gi|254780842|r 314 HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLK 365 (384)
Q Consensus 314 ~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~ 365 (384)
+.+++|+.||++|++++.+++..+..+.++|+.++|+.+++||.+|+++-
T Consensus 308 --~~~~aL~~Ye~~R~~r~~~v~~~s~~~~~~~~~~~~~~~~~Rn~~l~~~p 357 (373)
T PRK06753 308 --DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQYRSKLLVAVRNRIMKMMP 357 (373)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf --99999999999999999999999999756751598289999999998698
No 25
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=412.82 Aligned_cols=378 Identities=17% Similarity=0.218 Sum_probs=278.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCCCCCEEEECHHHHHHHHHCCCHHHHHHCCC-CCCCEEEEEC
Q ss_conf 970029999790899999999997898599982885-55578368887889999998899478886047-1234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS-FLQDLRTTMLMGEGIDFLKEINVWDFLQDIAE-PVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~-~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~-~~~~~~~~~~ 78 (384)
|++.||+||||||+||++|+.|++.|++|+|+||++ +..+.|+..|+|+++++|+++|+|+.+..... ++..+....
T Consensus 4 ~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~Rg~~i~p~tl~iL~~lGl~~~l~~~~~~~~~~~~~~~- 82 (409)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHSKVRTLRFDI- 82 (409)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEEE-
T ss_conf 8789989999188999999999977999999918999877861898789999999987986899736787334799995-
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEE---EEEECCCCC-EEEEE
Q ss_conf 5765545444345022287531201110000000012366479832-342056530268717---898302320-12111
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEE---VTILLSTGQ-QIVGQ 153 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~---v~v~~~dg~-~i~ad 153 (384)
.+..... ..+.... ....+...+++.+|.+.|.+++.+.+++. .++++++++..+++. ++++++||+ +++||
T Consensus 83 ~g~~~~~--~d~~~l~-~~~~~~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg~~~i~ad 159 (409)
T PRK06185 83 GGRTVTL--ADFSRLP-TRYPYIAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDGELEIRAD 159 (409)
T ss_pred CCEEEEE--ECCCCCC-CCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCCEEEEEE
T ss_conf 9938997--4300168-888842770189999999999851899599968888999995990899999848985899972
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 23530375432000378733222243047876411478861178872278754210001232011267507567324553
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYK 233 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~ 233 (384)
|||||||++|.||+.+|++.....+.+..+++.+.....+....+.+|.+.++++++|.+ +++.+.|.+++.....+..
T Consensus 160 lvVGADG~~S~VR~~~gi~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (409)
T PRK06185 160 LTVGADGRHSRVRELAGLEVREFGAPMDVLWFRLPRRPGDPEGSMGRFGPGQMLVMIDRG-DYWQCGYVIPKGGDAALRA 238 (409)
T ss_pred EEEECCCCCCHHHHHCCCCCEECCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCC-CCEEEEEEECCCCHHHHHH
T ss_conf 999738998478997599804015556899999257789986069998799689996189-9289999815885475552
Q ss_pred HHHHHHHHHHHHCCCC---CCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2234678877630675---4676211102232022334304565379421011001138445653211212389999998
Q gi|254780842|r 234 LPVNEIARRLEQYLYP---VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLF 310 (384)
Q Consensus 234 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l 310 (384)
.+.+.|.+.+....+. .++.+...++...+++....+++|+++|++|||||||+|+|++|||+|+||+||++|+|+|
T Consensus 239 ~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~r~~~w~~~rv~LiGDAAH~~~P~~GQG~N~ai~DA~~LA~~L 318 (409)
T PRK06185 239 AGLEAFRADVAELAPELADRVAELASWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANIL 318 (409)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 57899999999858156766542332132379874143305538798999974446479750146878999999999999
Q ss_pred HCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHH-HHHHHHHHHHHCHHHHHHHHHH-HCCCCC
Q ss_conf 525---7990799999999867999999999999999-86367989999-9999999985083789999998-619888
Q gi|254780842|r 311 QSE---HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNR-SLFSRYPLLQI-LRAGTFHLLKRVTPLRHQVMRQ-SLFLRD 383 (384)
Q Consensus 311 ~~~---~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~-~~~~~~~~~~~-~R~~~l~~~~~~~~lk~~~~~~-a~gl~~ 383 (384)
... +....+.|+.||++|++.+..++.......+ ++...-...+. .....++++.++|.|++...+- ++|+++
T Consensus 319 A~~l~~g~~~~~~L~~y~~~R~~~~~~~q~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~ 397 (409)
T PRK06185 319 AEPLRRGRVSDADLAAVQRRREFPTRVTQALQRAIQRRVLAPALAGGRPFPPPLLLRLLTRLPWLRRLPARLVGVGVRP 397 (409)
T ss_pred HHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 9998349996899999998757679999999999986333444456676787078899864907778888985268896
No 26
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=411.96 Aligned_cols=369 Identities=17% Similarity=0.160 Sum_probs=285.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 97002999979089999999999789859998288555-57836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|+ +||+||||||+||++|+.|+++|++|+|+||.+.+ ...|+..+++.++++|+.+|+++.+...+.++...++....
T Consensus 1 m~-tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~rt~eil~~~Gl~~~l~~~g~~~~~~~~~~~~ 79 (494)
T PRK08244 1 MK-TDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHPRTLELLEMRGLLERFLEKGRKLPSGHFAGLD 79 (494)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHHCEECCCCEEECCC
T ss_conf 99-89999994789999999999779999999089998889987460899999999878988988521076563681443
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECC--CC-CEEEEEEEE
Q ss_conf 765545444345022287531201110000000012366479832342056530268717898302--32-012111235
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLS--TG-QQIVGQFLI 156 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~--dg-~~i~adlvV 156 (384)
. ...+...+.. ..+...+++..+.+.|.+.+.+.+....+++++.++++++++|++++. +| ++++|+|||
T Consensus 80 ~------~~~~~~~~~~-~~~~~~~~Q~~le~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylV 152 (494)
T PRK08244 80 T------RLDFSALDTR-ANYTLFLPQAETEKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAV 152 (494)
T ss_pred C------CEECCCCCCC-CCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEE
T ss_conf 3------0320335778-88269815599999999999847988996868999998699789999908976899877999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHH-HHHHH
Q ss_conf 30375432000378733222243047876411478861178872278754210001232011267507567324-55322
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADF-YYKLP 235 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~-~~~~~ 235 (384)
||||++|.||+++||++.+.+|.+.++++++..+.++....++.+.+.|+++++|+.+++++++|..+...... ....+
T Consensus 153 GaDGa~S~VR~~lgI~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~ 232 (494)
T PRK08244 153 GADGAGSTVRKQAGIAFSGTDATLTAMLGDVALEDPPPSSFYSCCTREGGVVIVPLDGGIFRVLIIDPHRPQAPKDEPVT 232 (494)
T ss_pred EECCCCCHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 82466726798759985464113799999999637998769998559970999980899799999827655654447889
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--C
Q ss_conf 34678877630675467621110223202233430456537942101100113844565321121238999999852--5
Q gi|254780842|r 236 VNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQS--E 313 (384)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~--~ 313 (384)
.+++.+.+.+.++..++. ..+.+...|++..+++++|.++||+|+|||||.|+|++|||||+||+||++|+|+|.. .
T Consensus 233 ~e~~~~~l~~~~g~~~~~-~~~~~~s~~~~~~r~A~~~r~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA~vl~ 311 (494)
T PRK08244 233 LEELKKSLSRICGTDFGL-NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK 311 (494)
T ss_pred HHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 899999999863887760-3324898615300450324479689960401003887666513430324548999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 7990799999999867999999999999999863679899999999999985083789999998619
Q gi|254780842|r 314 HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 314 ~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
+..++.+|+.||.||+|....++..+.....++... +.....|.. +..+-.++...+.+..+..+
T Consensus 312 G~a~~~LLdTY~~ERrpva~~~~~~~~~~~~~~~~~-~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~ 376 (494)
T PRK08244 312 GWAPPWLLDSYHHERHPVGKALLRNTEVQTKLFDFT-RPGLALREL-LSGLLGFPEVNRYLAGQISA 376 (494)
T ss_pred CCCCCHHCCCCHHHCHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHH-HHHHHCCCHHHHHHHCCCCC
T ss_conf 889802323625544128999987556767640478-603889999-99974273012343123223
No 27
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=0 Score=406.72 Aligned_cols=361 Identities=18% Similarity=0.174 Sum_probs=261.5
Q ss_pred CCE-EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 970-0299997908999999999978985999828855557-83688878899999988994788860471234189942
Q gi|254780842|r 1 MNH-FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~-~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|.+ .+|+||||||+||++|+.|+|.|++|+|+|+.+...+ .+++.|+|+++++|++||+++.+...+.....+.+.+.
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~~~~G~gi~l~pn~~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 80 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDA 80 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEC
T ss_conf 98998499989788999999999978999999917998887871889898999999987990899831667662599976
Q ss_pred CCCCCC-CCCCC-CCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECCCCCEEEEEEE
Q ss_conf 576554-54443-45022287531201110000000012366479832-3420565302687178983023201211123
Q gi|254780842|r 79 TDRLIT-APDAI-FHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLSTGQQIVGQFL 155 (384)
Q Consensus 79 ~~~~~~-~~~~~-~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~dg~~i~adlv 155 (384)
.+.... ..... ......+.+. ..++|.+|++.|++.+.+.+.+. .++++++++++++++++++++||+++++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~g~p~--~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlv 158 (396)
T PRK08163 81 VDAEEVVRIPTGQAFRDRFGNPY--AVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL 158 (396)
T ss_pred CCCCEEEEECCCCHHHHHCCCCE--EEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEE
T ss_conf 88858885047604566249972--6877999999999999856981787099999999539979999889989987699
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC----CEEEEEECCCCCCCCCCCCCCCC-EEEEEEECHHHHHH
Q ss_conf 53037543200037873322224304787641147886----11788722787542100012320-11267507567324
Q gi|254780842|r 156 IGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPH----NGRCVEFHKSLGTITQIPLRENF-SSLVWIMESQEADF 230 (384)
Q Consensus 156 VgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~----~~~a~~~f~~~G~~a~lP~~~~~-~~ivw~~~~~~~~~ 230 (384)
|||||++|.||+++...... ..++.++...+..+..+ .+....++.+.+.+..+|+.++. .+++.....+..+.
T Consensus 159 VGADG~~S~vR~~l~~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~ 237 (396)
T PRK08163 159 IGCDGVKSVVRQQLVGDAPR-VTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEE 237 (396)
T ss_pred EECCCCCCHHHHHHCCCCCC-CCCEEEEEEEEECCCCCHHHCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCCH
T ss_conf 96488773688983699864-24517999998702385001357408985699459998768994899999945777200
Q ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC-CCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf --5532234678877630675467621110223202233-4304565379421011001138445653211212389999
Q gi|254780842|r 231 --YYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSG-MISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILL 307 (384)
Q Consensus 231 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~-~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~ 307 (384)
....+.+++.+.+..+.+.....+.....+..|++.. ..+++|.++||+|+|||||+|+|++|||+|+|||||++|+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~p~~~~ll~~~~~~~~~~~~~~~~~~~w~~gRv~LiGDAAH~m~P~~GQGan~aieDA~~La 317 (396)
T PRK08163 238 WGVKDGSKEEVLSYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRATLLGDAAHPMTQYMAQGACMALEDAVTLG 317 (396)
T ss_pred HCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 03686689999998753376799998275522234453034211203784898504024679853661878999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9985257990799999999867999999999999999863679899999999999985
Q gi|254780842|r 308 NLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLK 365 (384)
Q Consensus 308 ~~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~ 365 (384)
++|.....+.+.+|+.||++|+|++.+++..+....++|+.++ +.+..||..|+...
T Consensus 318 ~~L~~~~~~~~~al~~Ye~~R~pR~~~v~~~s~~~~~~~h~~~-~~~~~R~~~~~~~~ 374 (396)
T PRK08163 318 AALERCDGDFEAAFALYESVRIPRTARVVLSAREMGRIYHAAG-VERQVRNLLWKGRT 374 (396)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHCCC
T ss_conf 9997678889999999999999999999999999899868886-65889999984089
No 28
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=407.42 Aligned_cols=339 Identities=19% Similarity=0.200 Sum_probs=261.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 002999979089999999999789859998288555-5783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
++||+||||||+||++|+.|++.|++|+|+|+++.+ ...|+.++++.++++|+++|+|+.+...+.+...+..+...+.
T Consensus 6 tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~rt~eil~~lGl~d~i~~~~~~~~~~~~~~~~~~ 85 (503)
T PRK06184 6 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 85 (503)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCE
T ss_conf 57989999099999999999977998999948999886885898789999999987897899843576752499968970
Q ss_pred CCCCCCCCCCCHHCC-CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC---CEEEEEEEEE
Q ss_conf 554544434502228-753120111000000001236647983234205653026871789830232---0121112353
Q gi|254780842|r 82 LITAPDAIFHSSEIG-LDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG---QQIVGQFLIG 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg---~~i~adlvVg 157 (384)
............... ....++++++..+.+.|.+.+.+.+....+++++.++++++++|++++.++ ++++|+||||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~Q~~le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~a~ylVG 165 (503)
T PRK06184 86 VVESDMMHHLKPTPDEPYHLPLMVPQWRTEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEETVRARYLVG 165 (503)
T ss_pred EEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEC
T ss_conf 56510243346666765352577227999999999998679869947668899981998999998599718999877741
Q ss_pred ECCCCCCCCCCCCCCCCCCCCC-EEEEEEEECCCCCCCEEEEEECCCC--CCCCCCCCCCCC-EEEEEEECHHHHHHHHH
Q ss_conf 0375432000378733222243-0478764114788611788722787--542100012320-11267507567324553
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYP-QKALVLNFQHSMPHNGRCVEFHKSL--GTITQIPLRENF-SSLVWIMESQEADFYYK 233 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~-~~~l~~~~~~~~~~~~~a~~~f~~~--G~~a~lP~~~~~-~~ivw~~~~~~~~~~~~ 233 (384)
|||++|.||+++|+++.+..|. +.++++++..+.++....++++... ++++++|+++.. +.+.+..+.+.. ..
T Consensus 166 aDGa~S~VR~~lgI~~~g~~~~~~~~vv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~ 242 (503)
T PRK06184 166 ADGGRSFVRKALGIGFPGETLGIDRALVADVSLSGLDRDAWHIFPDGDGARMIALCPLAGTDLFQIQAPLPPGGE---PD 242 (503)
T ss_pred CCCCCHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCC---CC
T ss_conf 577774668863998755555664499998884578987269974489984799997589948999998789866---68
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 2234678877630675467621110223202233430456537942101100113844565321121238999999852-
Q gi|254780842|r 234 LPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQS- 312 (384)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~- 312 (384)
.+.+.+.+.+..........+..+.+...|++..+++++|.++||+|+|||||.|||++|||||+||+||.+|+|+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~rvA~~~~~gRvfLaGDAAH~~~P~gGqGmN~Gi~DA~NLaWKLa~v 322 (503)
T PRK06184 243 LSADGLTALLAERTGRTDIRLHSVTWLSAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSIQDAYNLGWKLAAV 322 (503)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99899999999975899863678757897110036703433796798335012059965663333155678899999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -579907999999998679999999999999998
Q gi|254780842|r 313 -EHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRS 345 (384)
Q Consensus 313 -~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~ 345 (384)
.+ ..+.+|+.|+.||+|.+..++..+..+...
T Consensus 323 l~G-a~~~LLdtY~~ERrpva~~~i~~~~~~~~~ 355 (503)
T PRK06184 323 LAG-APEALLDSYEEERRPVAAAVLGLSTELLDA 355 (503)
T ss_pred HCC-CCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 729-992551502888899999998764777765
No 29
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=0 Score=399.29 Aligned_cols=359 Identities=17% Similarity=0.219 Sum_probs=254.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 00299997908999999999978985999828855557-83688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
+.||+||||||+||++|+.|++.|++|+|||+.+...+ .+++.|+|+++++|+++|+++.+...+.....+...+....
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~G~gi~l~pn~~~~L~~lGl~~~l~~~~~~~~~~~~~d~~~~ 81 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99799989588999999999978999999917998888884788888999999987992788843888625999607867
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECC---CCCEEEEEEEEE
Q ss_conf 5545444345022287531201110000000012366479832-342056530268717898302---320121112353
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLS---TGQQIVGQFLIG 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~---dg~~i~adlvVg 157 (384)
.........+........-...++|.+|++.|++.+.+.+.+. .++.++++++++++++++++. +++++++|+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~adlvIG 161 (400)
T PRK06475 82 RPLLHMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCEEEE
T ss_conf 45652024432222578965997789999999999974899489738789999952896048997389866997068996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC---------CCCCEEEEEECCCCCCCCCCCCCCCC-EEEEEEECHHH
Q ss_conf 037543200037873322224304787641147---------88611788722787542100012320-11267507567
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALVLNFQHS---------MPHNGRCVEFHKSLGTITQIPLRENF-SSLVWIMESQE 227 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~---------~~~~~~a~~~f~~~G~~a~lP~~~~~-~~ivw~~~~~~ 227 (384)
|||++|.||+.++.+..... ++.+....+..+ .++......++.+.+++..+|+.++. .++++....+.
T Consensus 162 ADGi~S~vR~~~~~~~~~~~-g~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~v~~~~~~~ 240 (400)
T PRK06475 162 CDGVWSMLRQKAGYSKARFS-GHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGEN 240 (400)
T ss_pred CCCCCCCHHHHCCCCCCCCC-CEEEEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 69976313331589878758-63899999860126555654067877079996799769999858996899999706888
Q ss_pred H-HHHH-HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCC-CHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3-2455-3223467887763067546762111022320223343-04565379421011001138445653211212389
Q gi|254780842|r 228 A-DFYY-KLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMI-SHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVI 304 (384)
Q Consensus 228 ~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~-~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~ 304 (384)
. +.+. ..+++++.+.+..+.++....+..+.++..||+.... .+.|..+||+|+|||||+|+|++|||+|||||||+
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gRvvLiGDAAH~~~P~~GQGan~aieDA~ 320 (400)
T PRK06475 241 PGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAA 320 (400)
T ss_pred CHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCEEEEEEEEECCCCEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 00220355899999999863054799999851250464335402343433784688403225569751013778999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999985257990799999999867999999999999999863679899999999999985
Q gi|254780842|r 305 ILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLK 365 (384)
Q Consensus 305 ~L~~~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~ 365 (384)
+|+++|.. .+.+.+|+.||+.|+|++.+++..+..-.++|+.++|. +..|+..|+...
T Consensus 321 ~LA~~L~~--~~~~~al~~Ye~~R~~R~~~v~~~s~~~~~~~h~~~~~-~~~r~~~~~~~~ 378 (400)
T PRK06475 321 ALAEALDS--DDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHATGIF-ALGRNMLFAIRS 378 (400)
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHCCC
T ss_conf 99998655--78999999999999999999999999979986899878-998899985569
No 30
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=399.54 Aligned_cols=345 Identities=19% Similarity=0.208 Sum_probs=248.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 9700299997908999999999978985999828855557-836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
||+ |+||||||+||++|+.|+|.|++|+|||+++.... .+++.++|+++++|+++|+|+.+...+.+...+.+++..
T Consensus 4 ~kk--V~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g~gi~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKK--VLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYGAGITLQGNTLRALKELGVLDECLEHGFGFDGVDIFDPA 81 (375)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECC
T ss_conf 987--999996689999999999679999999089998888608988989999999879958999607885229999689
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76554544434502228753120111000000001236647983234205653026871789830232012111235303
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSD 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgAD 159 (384)
+........... .+...+. .+.+.|..|.+.|.+.+.+.+....++++++++++++++++++++||+++++|+|||||
T Consensus 82 G~~~~~~~~~~~-~~~~~~~-~~~i~r~~L~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dG~~~~adllIGAD 159 (375)
T PRK06847 82 GHLLAEVPTPRV-AGDDVPG-GGGIMRPTLARILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTDGTTGRYDLVVGAD 159 (375)
T ss_pred CCEEEEECCHHH-CCCCCCC-EEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECC
T ss_conf 988998343120-3566772-12770999999999989846997996658978666498589998589889987999857
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEE-EEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHH-HH
Q ss_conf 754320003787332222430478-7641147886117887227875421000123201126750756732455322-34
Q gi|254780842|r 160 GRNSSVRRQMGYGENKWSYPQKAL-VLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLP-VN 237 (384)
Q Consensus 160 G~~S~vR~~l~~~~~~~~y~~~~l-~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~-~~ 237 (384)
|++|.||+.+..+.....|...++ .+.+. ..+.......++.+.++++++|++++...+.+..+.+......... .+
T Consensus 160 G~~S~vR~~l~~~~~~~~~~g~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (375)
T PRK06847 160 GVYSKVRSLVFPEEPKPEYTGQGVWRAVLP-RPAEIDRTLMYLGGTGKAGVNPLSEDEMYMFVTEPRPSDDRIEPATWPD 238 (375)
T ss_pred CCCCHHHHHHCCCCCCCCCCCEEEEEEEEC-CCCCCCCEEEEECCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHH
T ss_conf 876278897277777870423389999916-8767784399996994499998379919999994686312468313799
Q ss_pred HHHHHHHHCCCCCCCCC----CCCEEEEEECCCCC-CCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67887763067546762----11102232022334-30456537942101100113844565321121238999999852
Q gi|254780842|r 238 EIARRLEQYLYPVIGKI----EVVTDVQIFQLSGM-ISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQS 312 (384)
Q Consensus 238 ~~~~~l~~~~~~~~~~~----~~~~~~~~~pl~~~-~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~ 312 (384)
.+.+.+..+..+....+ ........+|+... ..+.|+++||+|+|||||+|+|++|||+|+||+||++|+++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~gRv~LiGDAAH~~~P~~GqG~N~aieDA~~La~~La~ 318 (375)
T PRK06847 239 RLRELLAPFGGPVLEALTEHITEDAHVVYRPLEQLLVPEPWHRGRVVLIGDAVHATTPHLASGAGMAIEDAIVLAEELAR 318 (375)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999865476578899876055554366464451156640248799998011237985235888999999999999807
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 579907999999998679999999999999998636798
Q gi|254780842|r 313 EHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYP 351 (384)
Q Consensus 313 ~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 351 (384)
. .+.+.+|+.||++|+|++.+++..+..+.+++....+
T Consensus 319 ~-~~~~~aL~~Ye~~R~~r~~~vv~~s~~~gr~~~~~~~ 356 (375)
T PRK06847 319 H-DDLEAALQAYQERRWERCRMVVENSARIGRIEIKGGD 356 (375)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9-9989999999999999999999999997568863898
No 31
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=396.27 Aligned_cols=364 Identities=20% Similarity=0.188 Sum_probs=266.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 970029999790899999999997898599982885555--783688878899999988994788860471234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|..|||+||||||+||++|+.|++.|++|+|+||++... ..|+..+++.++++|+++|+++.+...+........
T Consensus 1 M~~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~~l~~rt~eil~~~Gl~d~~~~~g~~~~~~~~--- 77 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAGGLHARTLEVLDQRGIVDRFLAEGQVAQVTGF--- 77 (488)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCC---
T ss_conf 99898999893889999999999769999999689998776984847789999999987998999842652111240---
Q ss_pred CCCCCCCCCCCCCCHHC-CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEE
Q ss_conf 57655454443450222-87531201110000000012366479832342056530268717898302320121112353
Q gi|254780842|r 79 TDRLITAPDAIFHSSEI-GLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIG 157 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVg 157 (384)
... .++..+. ...++++.+++..+.+.|.+.+.+.+....++++++++++++++|+++++||++++|+||||
T Consensus 78 ~~~-------~~~~~~~p~~~~~~~~~~Q~~lE~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg~ti~a~ylVG 150 (488)
T PRK06834 78 AQI-------RLDISDFPTRHNYGLALRQNHIERILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDGSTLRAQYLVG 150 (488)
T ss_pred CCE-------ECCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEE
T ss_conf 120-------2567658777783788548999999999998589979808889999983996899988982798758997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCC-CCEEEEEEECHHHHHHHHHHHH
Q ss_conf 037543200037873322224304787641147886117887227875421000123-2011267507567324553223
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYKLPV 236 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~-~~~~ivw~~~~~~~~~~~~~~~ 236 (384)
|||++|.||+++||++.+++|.++++++++..+.++.- . .++...|+.+++|... +.+.+++..+..... ...+.
T Consensus 151 aDGa~S~VR~~lGI~~~G~~~~~~~~v~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 226 (488)
T PRK06834 151 CDGGRSLVRKAAGIEFPGWDATTSYLLAEVEMTEEPPW-G-VRRDALGVHAFGRLEDEGPVRVVVTERQLGAA--GEPTL 226 (488)
T ss_pred ECCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCC-E-EECCCCCEEEEEECCCCCEEEEEEECCCCCCC--CCCCH
T ss_conf 06767467886499876787652799999981478873-0-21388735899731799559999726545545--68988
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 46788776306754676211102232022334304565379421011001138445653211212389999998525--7
Q gi|254780842|r 237 NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE--H 314 (384)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~--~ 314 (384)
+++.+.+...++..++ +....+...|++..+.+++|.++||+|+|||||.|+|++|||||+||+||++|+|+|+.. +
T Consensus 227 ~~~~~~~~~~~g~~~~-i~~~~~~s~f~~~~r~A~~y~~gRVfLaGDAAH~~~P~gGqGmNtGi~DA~NLaWKLA~vl~G 305 (488)
T PRK06834 227 DDLREALIAVYGTDYG-IHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG 305 (488)
T ss_pred HHHHHHHHHHHCCCCC-EEEEEEEEECCCHHEEECCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999999886388765-002569987042430403234785788035011479764652112377888899999999759
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 9907999999998679999999999999998636798999999999999850837899999986198
Q gi|254780842|r 315 MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 315 ~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
...+.+|+.||.||+|....++..+.....++.. .+....+|+....++. .+..++.+.-...|+
T Consensus 306 ~a~~~LLdsY~~ERrpva~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~ 370 (488)
T PRK06834 306 TSPESLLDTYHAERHPVAARVLRNTMAQVALLRP-DDRTEALRDIVAELLG-MDEPRKRIAAMMSGL 370 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHCCCC
T ss_conf 9980887661888899999999988987653168-8304778999998852-614777654202455
No 32
>PRK08132 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=392.89 Aligned_cols=367 Identities=14% Similarity=0.174 Sum_probs=275.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 002999979089999999999789859998288555-5783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
+.||+||||||+||++|+.|+++|++++|+||++.. ...|+..+++.++++|+++|+++.+.+.+.+....+.+.. +.
T Consensus 23 ~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~~pRA~~~~~rtmeil~~lGl~~~i~~~g~~~~~~~~~~~-~~ 101 (549)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFSKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR-DE 101 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCEEEEC-CC
T ss_conf 69999999257999999999987999999959999999997888898999999986992899961774446448856-86
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC-CCCEEEEEECCCCEEEEEECC--CCC-EEEEEEEEE
Q ss_conf 5545444345022287531201110000000012366479832-342056530268717898302--320-121112353
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH-CFDALANEIQIGEEEVTILLS--TGQ-QIVGQFLIG 157 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~v~v~~~--dg~-~i~adlvVg 157 (384)
........-. .....+. ...+++..+.+.|.+.+.+.+++. .++++++++++++++|+++++ +|+ +++|+||||
T Consensus 102 ~~~~~~~~~~-~~~~~p~-~~~l~Q~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVG 179 (549)
T PRK08132 102 EVYRFDLLPE-PGHRRPA-FINLQQYYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIA 179 (549)
T ss_pred EEEEECCCCC-CCCCCCC-EEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
T ss_conf 5776047888-8876681-5867999999999999986899789957689999984994699998799868999889986
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECC----CCCCCCCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 037543200037873322224304787641147886117887227----8754210001232011267507567324553
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVEFHK----SLGTITQIPLRENFSSLVWIMESQEADFYYK 233 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~~f~----~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~ 233 (384)
|||++|.||+++|+++.+..|.+.++++++..+.+.....+.+|. +.+.+.+.|.+++.+.+.+.+..+. +....
T Consensus 180 aDGarS~VR~~lGi~~~G~~~~~~~lv~Dv~~~~~~p~~r~~~~~p~~~~~~~~~~~~~~~~~~Ri~~~l~~~~-d~~~~ 258 (549)
T PRK08132 180 CDGARSPLREMLGLEFKGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDA-DPEAE 258 (549)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCC-CHHHH
T ss_conf 37787735886399875776553379988885278886347996467799967999977998799998638999-84451
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22346788776306754676211102232022334304565379421011001138445653211212389999998525
Q gi|254780842|r 234 LPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE 313 (384)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~ 313 (384)
..++.+.+.++..+++.. .+ .+.+...|.+..+++++|.+|||+|+|||||.|+|++|||||+||+||++|+|+|...
T Consensus 259 ~~~e~~~~~v~~~lg~~~-~~-ei~~~s~~~~~~rvA~~~r~GRVfLaGDAAH~~pP~GGqGmNtGi~DA~NLaWKLA~V 336 (549)
T PRK08132 259 KKPENVIPRVRALLGEDV-EF-ELEWISVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGVQDADNLAWKLALV 336 (549)
T ss_pred CCHHHHHHHHHHHHCCCC-CC-CEEEEEEEEEEEEEECCCCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 697999999999729888-85-2699997240127702134685898325212348766654443420377899999999
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf --79907999999998679999999999999998636798999999999999850837899999
Q gi|254780842|r 314 --HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVM 375 (384)
Q Consensus 314 --~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~ 375 (384)
+...+.+|+.|+.||+|....++..+.....++...++....+|+..+.+....+++++.+-
T Consensus 337 l~G~A~~~LLdTY~~ERrp~a~~~i~~s~~~~~~~~~~~~~~~~~r~~~~~~a~~~~~~r~~~~ 400 (549)
T PRK08132 337 LRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARSLVN 400 (549)
T ss_pred HCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 7588894221620655148999999876654302278976788999999877530556787640
No 33
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=385.14 Aligned_cols=335 Identities=18% Similarity=0.232 Sum_probs=250.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 002999979089999999999789859998288555-5783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
..||+||||||+||++|+.|+++|++|+|+||.+.+ ...|+..+++.++++|+.+|+++.+...+.++.....+.. +.
T Consensus 5 ~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~~l~~rtleil~~~Gl~d~l~~~g~~~~~~~~~~~-g~ 83 (480)
T PRK07190 5 VADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRADALNARTLQLLELADLFDELYPLGKPCNTSSVWAD-GQ 83 (480)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEECCC-CE
T ss_conf 64489999388999999999887999999969999999986757568999999975978999851775541267128-85
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 55454443450222875312011100000000123664798323420565302687178983023201211123530375
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGR 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~ 161 (384)
........+...+........++++..+.+.|.+.+.+.+....+++++++++++++++++++++|++++|+|||||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~E~~L~~~~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~ge~i~a~ylVGcDGa 163 (480)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDEKLKETAAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYVIGADGS 163 (480)
T ss_pred EEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEECCCCCEEEEEEEEEECCC
T ss_conf 75024666433567777855851889999999999986699799152899999858935998489989988888860677
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEE--CCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 43200037873322224304787641--1478861178872278754210001232011267507567324553223467
Q gi|254780842|r 162 NSSVRRQMGYGENKWSYPQKALVLNF--QHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEI 239 (384)
Q Consensus 162 ~S~vR~~l~~~~~~~~y~~~~l~~~~--~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~~~~~~~ 239 (384)
+|.||+++|+++....+...+.+.+. ..+.|.......+....+.+.++|..+....+....+..+ .+.++.
T Consensus 164 ~S~VRk~lgI~f~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~~~~p~~g~~~r~~~~~~~~~------~t~ee~ 237 (480)
T PRK07190 164 RSFVRNHFAIPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDTKD------FTLQEA 237 (480)
T ss_pred CCHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCC------CCHHHH
T ss_conf 61678875988556766517999999981589999837999718987799967898878999667665------998999
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHH-HCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CCC
Q ss_conf 88776306754676211102232022334304565-379421011001138445653211212389999998525--799
Q gi|254780842|r 240 ARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFG-KKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSE--HMS 316 (384)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~-~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~--~~~ 316 (384)
.+.+.+.+.+..-.+..+.+...|++..+.+++|. +|||+|+|||||.++|++|||||+||+||.+|+|+|+.. +..
T Consensus 238 ~~~i~~~~~~~~~~~~~i~w~s~~~~~~r~A~~yr~~GRVfLaGDAAH~~pP~GGqGmNtGiqDA~NLaWKLAavl~G~a 317 (480)
T PRK07190 238 MDKINHAVRPHSLNFKDIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLMWKLHMVMHFGA 317 (480)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999873866566115789974005550374543279489941143147986566201116778889999999974899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0799999999867999999999999999
Q gi|254780842|r 317 FRAIGNRYHAMRRGDIIKRIVGTDLFNR 344 (384)
Q Consensus 317 ~~~~l~~Y~~~R~~~~~~~~~~~~~l~~ 344 (384)
.+.+|+.|+.||+|....++..+..+.+
T Consensus 318 ~~~LLDsY~~ER~Pva~~~l~~s~~~~~ 345 (480)
T PRK07190 318 SKELLHSYEAERKPVAHGVIETSGELVR 345 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8278766699889999999998899986
No 34
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=376.42 Aligned_cols=340 Identities=17% Similarity=0.192 Sum_probs=240.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCC---CEEEE-E
Q ss_conf 002999979089999999999789859998288555-578368887889999998899478886047123---41899-4
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVS---SFRLV-D 77 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~---~~~~~-~ 77 (384)
+.||+||||||+||++|+.|++.|++|+|+||++.. ...|+..+++.++++|+.+|+++.+...+.|.. ..... .
T Consensus 7 ~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~rA~~l~~rtlEil~~lGl~~~l~~~g~p~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAFNPKANATSARSMEHFRRLGIADEVRSAGLPADYPTDIAYFTR 86 (545)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEEE
T ss_conf 89989999498999999999987999999889999887885899888999999987988999850787534663368861
Q ss_pred CCCCCCC----------CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCC-CCCCCEEEEEECCCCEEEEEECC-
Q ss_conf 2576554----------54443450222875312011100000000123664798-32342056530268717898302-
Q gi|254780842|r 78 ITDRLIT----------APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPL-IHCFDALANEIQIGEEEVTILLS- 145 (384)
Q Consensus 78 ~~~~~~~----------~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~-~~~~~~~v~~i~~~~~~v~v~~~- 145 (384)
..+.... .............+.+.+.+++..+.+.|.+.+.+.+. ...++++++++++++++|++++.
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~qd~~gV~~~~~~ 166 (545)
T PRK06126 87 LTGYELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEEE
T ss_conf 17668886216754433456544566556656335628899999999999748998898077899999838946999998
Q ss_pred --CCC--EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-----CCC-EEEEEECCCCCCCCCCCCCCC
Q ss_conf --320--1211123530375432000378733222243047876411478-----861-178872278754210001232
Q gi|254780842|r 146 --TGQ--QIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSM-----PHN-GRCVEFHKSLGTITQIPLREN 215 (384)
Q Consensus 146 --dg~--~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~-----~~~-~~a~~~f~~~G~~a~lP~~~~ 215 (384)
+|+ +++|+|||||||++|.||+++||++.+..+.+.++.+.+..+. ++. ...+..+.+.+...++++.++
T Consensus 167 ~~~g~~~~i~A~ylVGaDGarS~VR~~lGI~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 246 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSAVRKSLGISYEGTSGVQRMLSIYIRAPGLYALVPHDPAWMYWLFNPDRRGVLVAIDGR 246 (545)
T ss_pred CCCCCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHCCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf 99994899987799974788737788649887677631158999996685464057887259999779986799995598
Q ss_pred -CEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHH
Q ss_conf -0112675075673245532234678877630675467621110223202233430456537942101100113844565
Q gi|254780842|r 216 -FSSLVWIMESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQ 294 (384)
Q Consensus 216 -~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~Gq 294 (384)
++.+.+..+.+... ..+..+..+.+...++..+ .++ +.....|.....++++|.++||+|+|||||.++|++||
T Consensus 247 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~-i~~~~~w~~~~~vA~~~r~gRVfLaGDAAH~~~P~gGq 321 (545)
T PRK06126 247 DEWLFHQLRPGEDEF---DIEDVDARAFVRRGLGEDI-PYE-VLSVVPWVGRRLVADSYRKGRVFLAGDAAHLFTPTGGY 321 (545)
T ss_pred CEEEEEEECCCCCCC---CCCHHHHHHHHHHHHCCCC-CEE-EEEEEEEEEEEEEHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 579999815888666---7870899999999629987-448-99988877668882022579689701300125897665
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3211212389999998525--7990799999999867999999999999999863
Q gi|254780842|r 295 GLNLSMRDVIILLNLFQSE--HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347 (384)
Q Consensus 295 G~n~ai~Da~~L~~~l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~ 347 (384)
|||+||+||++|+|+|+.. +...+.+|+.|+.||+|....++..+....+.+.
T Consensus 322 GmNtGi~DA~NLaWKLA~v~~G~a~~~LLdtY~~ERrpva~~~~~~~~~~~~~~~ 376 (545)
T PRK06126 322 GMNTGIGDAVNLGWKLAAVLNGWAGPALLDSYEAERRPIALRNTDYARENADALG 376 (545)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1022287899899889887368788355034322307999999999998898754
No 35
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=100.00 E-value=0 Score=374.48 Aligned_cols=330 Identities=20% Similarity=0.182 Sum_probs=234.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 0029999790899999999997898599982885555-783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
..||+||||||+||++|+.|+|+|++|+||||.+.+. ..+++.|+|+++++|+++|+++.+...+.+...+........
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 80 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTS 80 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99789999288999999999877998999928999887877999898999999987986899850687510599983786
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-----CEEEEEEEE
Q ss_conf 554544434502228753120111000000001236647983234205653026871789830232-----012111235
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-----QQIVGQFLI 156 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-----~~i~adlvV 156 (384)
.... ...+ + ........++|..|.+.|++.+.+.+....++++++.+..+.+++++++.++ .++++|+||
T Consensus 81 ~~~~-~~~~---~-~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvI 155 (349)
T pfam01494 81 RRRA-DLDF---L-TSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLV 155 (349)
T ss_pred CCEE-ECCC---C-CCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf 4222-0145---5-677626886299999999999985799899661787752059943799984589955899976884
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEECC----CCC---CCEEEEEECCCCCCCCCCCCCCCCEE-EEEEEC--HH
Q ss_conf 303754320003787332222430478764114----788---61178872278754210001232011-267507--56
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALVLNFQH----SMP---HNGRCVEFHKSLGTITQIPLRENFSS-LVWIME--SQ 226 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~----~~~---~~~~a~~~f~~~G~~a~lP~~~~~~~-ivw~~~--~~ 226 (384)
||||++|.||++++++.....+........+.. +.+ .....+..+.+.+.+++.|..+.... ..|..+ ..
T Consensus 156 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 235 (349)
T pfam01494 156 GCDGGRSPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSAGRSRYYVQVPWDPE 235 (349)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 15777648999759997555454389999995257842123567428999718998699997279982799999707854
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 73245532234678877630675467621110223202233430456537942101100113844565321121238999
Q gi|254780842|r 227 EADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL 306 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L 306 (384)
....-...+.+++.+.+...+...... ..+.....||+....+++|+++||+|||||||+|+|++|||+|+||+||++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~L 314 (349)
T pfam01494 236 VEERPEEFTDEEAKQRLRSAVGIDLAD-VEILWKSIWGVRSRVATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNL 314 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 222544389999999999864865455-5635578620035673551159899998610238863546775899999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998525--7990799999999867999999999
Q gi|254780842|r 307 LNLFQSE--HMSFRAIGNRYHAMRRGDIIKRIVG 338 (384)
Q Consensus 307 ~~~l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~ 338 (384)
+++|... ....+++|+.||++|+|++..++.+
T Consensus 315 a~~L~~~~~g~~~~~~L~~Ye~~R~~~~~~~~~~ 348 (349)
T pfam01494 315 AWKLAAVLRGTAGEALLDTYEAERRPVAWAVVDF 348 (349)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999749998899999999999999999850
No 36
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=0 Score=368.60 Aligned_cols=347 Identities=18% Similarity=0.216 Sum_probs=254.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCC-CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 0029999790899999999997-89859998288555-578368887889999998899478886047123418994257
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAK-KGFLTALVSPRSFL-QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~-~g~~v~iiE~~~~~-~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
++||+||||||+||++|+.|+| .|+++.|+||++.+ ...|+..+++.++++|+.+|+.+.+...+.++..+.+|....
T Consensus 32 ~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~~~~~~~rA~gl~~RTlEil~~~Gla~~i~~~g~~~~~~~~w~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILAEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHCCCHHHHHHCCEECCEEEEECCCC
T ss_conf 58889999658999999998713799889992799999998837777899999987798589985260144378855788
Q ss_pred CCCCC--CCCCCCCHHCCCCCCC-CHHHHCCHHHHHHHHHHHCCCC-C-CCCEEEEEECCCCEE---EEEECC--C----
Q ss_conf 65545--4443450222875312-0111000000001236647983-2-342056530268717---898302--3----
Q gi|254780842|r 81 RLITA--PDAIFHSSEIGLDAFG-YNIPNHVLMESFAEKISQDPLI-H-CFDALANEIQIGEEE---VTILLS--T---- 146 (384)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~g-~~i~r~~L~~~L~~~~~~~~~~-~-~~~~~v~~i~~~~~~---v~v~~~--d---- 146 (384)
..... ..........+...+. .++++..+.+.|.+.+.+.+.. . .++.++.+++.++++ |+++++ +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~s~~p~~~l~Q~~~e~~l~~~l~~~~~~v~~~~g~~~~~~~~d~~~~~pV~vtl~~~~~~~~ 191 (634)
T PRK08294 112 ANPARIVRSGRVQDVEDGLSEFPHVILNQARVHDYFLDFMRNSPTRLEPDYGYEFVDLEVDEDGDYPVTVTLRRTDGERE 191 (634)
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCCCEEEEEEECCCCCC
T ss_conf 77761355575777777767786275454889999999998658707865415998889757877535999972687667
Q ss_pred C--CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEC--CCCCCCEE-EEEECCCCCCCCCCCCCCCC-EEEE
Q ss_conf 2--01211123530375432000378733222243047876411--47886117-88722787542100012320-1126
Q gi|254780842|r 147 G--QQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQ--HSMPHNGR-CVEFHKSLGTITQIPLRENF-SSLV 220 (384)
Q Consensus 147 g--~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~--~~~~~~~~-a~~~f~~~G~~a~lP~~~~~-~~iv 220 (384)
| ++++|+|||||||++|.||+++|+++.+..+.+.|.++.+. ++.|+-.. +.......|.+.++|..++. +.+.
T Consensus 192 g~~~tvrA~YlVGcDGA~S~VRk~lGi~~~G~~~~~~w~v~Dv~~~tdfPd~r~~~~i~~~~~g~~~~iPre~~~~~R~~ 271 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRVRKSIGRELHGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASGGSILLIPREGGYLVRLY 271 (634)
T ss_pred CCEEEEEEEEEEECCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 84379996179876877632587649876588766336999998536888753477786079962999977898699999
Q ss_pred EEE---CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHH----------HHCCCCEECCCCCC
Q ss_conf 750---75673245532234678877630675467621110223202233430456----------53794210110011
Q gi|254780842|r 221 WIM---ESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCF----------GKKRVVLVGEAAHA 287 (384)
Q Consensus 221 w~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~----------~~~rv~liGDAAH~ 287 (384)
..+ ++++.......+.+++.+...+.+.+.--+++.+.++..|.+.++.+++| .++||+|+|||||+
T Consensus 272 i~l~~~~~~~~~~~~~~t~e~~~~~~~~il~P~~l~~~~v~W~s~y~i~~RvA~~F~d~~~~~~~~r~gRVFLAGDAAH~ 351 (634)
T PRK08294 272 VDLGEVPPDERVAVRNTTVEEVIAKANRILHPYTLDVKEVAWWSVYEVGHRLTDRFDDVPAEERGTRLPRVFIAGDACHT 351 (634)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEHHHHCCCCHHHCCCCCCCEEEECCHHHC
T ss_conf 97676687643320006999999999975285666414787877413132311122243100013434778993534313
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 38445653211212389999998525--799079999999986799999999999999986367
Q gi|254780842|r 288 LPPICGQGLNLSMRDVIILLNLFQSE--HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSR 349 (384)
Q Consensus 288 ~~P~~GqG~n~ai~Da~~L~~~l~~~--~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~ 349 (384)
++|.+|||||+||+||++|+|+|+.. +...+.+|+.|+.||+|.+.+++.+-..+.++|+..
T Consensus 352 hsP~gGqGMNtgiqDA~NLgWKLA~Vl~G~A~~~LLdTYe~ERrpvA~~LI~fD~~~s~lf~~~ 415 (634)
T PRK08294 352 HSAKAGQGMNVSMQDGFNLGWKLAHVLSGRSPPELLQTYSAERQAIAQELIDFDREWSTMMAKP 415 (634)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7864334413422005555657889871889848877689999999999998779999984468
No 37
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=0 Score=368.40 Aligned_cols=347 Identities=16% Similarity=0.213 Sum_probs=233.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCC-EEEECHHHHHHHHHCCCHHHHHHCCCC----CCCEEEEEC
Q ss_conf 2999979089999999999789-8599982885555783-688878899999988994788860471----234189942
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSFLQDLR-TTMLMGEGIDFLKEINVWDFLQDIAEP----VSSFRLVDI 78 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~~~~~r-~~~l~~~s~~~L~~lGl~~~l~~~~~~----~~~~~~~~~ 78 (384)
.|+||||||+||++|+.|+|+| ++|+|+|+.+...+.+ ++.|+||++++|++||+.+.+...+.. ...+.. +.
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~~~GagI~l~pn~~r~L~~lGl~~~~~~~~~~~~~~~~~~~~-~~ 80 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWF-EW 80 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEE-EE
T ss_conf 89999944899999999985399988999428988888329999989999999879916999986226876420578-73
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 57655454443450222875312011100000000123664798323420565302687178983023201211123530
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgA 158 (384)
..... . .........+.. ...+.|.+|++.|++.+.+.. ..++++++.+++++++++++|+||+++++|+||||
T Consensus 81 ~~~~~-~-~~~~~~~~~~~~--~~~i~R~~L~~~L~~~~~~~~--~~~~~~v~~v~~~~~~v~v~f~dG~~~~aDlVVGA 154 (414)
T TIGR03219 81 RNGSD-A-SYLGATIAPGVG--QSSVHRADFLDALLKHLPEGI--ASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGA 154 (414)
T ss_pred CCCCC-C-CCCCCCCCCCCC--CCEECHHHHHHHHHHHCCCCE--EEECCEEEEEEEECCEEEEEECCCCEEECCEEEEC
T ss_conf 15776-3-212532357888--542849999999985476667--79698999999958927999879988722689974
Q ss_pred CCCCCCCCCCCC----CCCCCCCCC-EEEEEEEECCCCC-----CC-------EEEEEECCCCCCCCCCCCCCCC-EEEE
Q ss_conf 375432000378----733222243-0478764114788-----61-------1788722787542100012320-1126
Q gi|254780842|r 159 DGRNSSVRRQMG----YGENKWSYP-QKALVLNFQHSMP-----HN-------GRCVEFHKSLGTITQIPLRENF-SSLV 220 (384)
Q Consensus 159 DG~~S~vR~~l~----~~~~~~~y~-~~~l~~~~~~~~~-----~~-------~~a~~~f~~~G~~a~lP~~~~~-~~iv 220 (384)
||+||.||+.+. .+.....|. ..++.+.+..... .. +...-++.+++.+..+|+.++. .+++
T Consensus 155 DGi~S~vR~~~~~~~~~~~~~p~~~g~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~ 234 (414)
T TIGR03219 155 DGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVV 234 (414)
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECHHHCCHHHHCCCCCCCCCCCCEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 76423678887334678877751146599999971676020220256652125674389748976999980799789999
Q ss_pred EEECH-HHHH--------HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC-CCHHHHHCCCCEECCCCCCCCC
Q ss_conf 75075-6732--------455322346788776306754676211102232022334-3045653794210110011384
Q gi|254780842|r 221 WIMES-QEAD--------FYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGM-ISHCFGKKRVVLVGEAAHALPP 290 (384)
Q Consensus 221 w~~~~-~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~-~~~~~~~~rv~liGDAAH~~~P 290 (384)
+.... ...+ +....+.+++.+.+..+-+....-++.+.....|++... ..++|++|||+|+|||||+|+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~w~l~~~~~l~~w~~GRVvLiGDAAHam~P 314 (414)
T TIGR03219 235 AFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLP 314 (414)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 99747665666775556544620499999986689878999997198443655640366775203868998402244687
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 45653211212389999998525---799079999999986799999999999999986367989999999
Q gi|254780842|r 291 ICGQGLNLSMRDVIILLNLFQSE---HMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRA 358 (384)
Q Consensus 291 ~~GqG~n~ai~Da~~L~~~l~~~---~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~ 358 (384)
+.|||+|||||||++|+++|... ..+.+.+|+.||+.|+|++.+++..+....++|+..+|....-+.
T Consensus 315 ~~GQGa~~AiEDA~vLa~~L~~~~~~~~~~~~al~~Ye~~R~~R~~~v~~~sr~~~~~~~~~~~~~~~~~~ 385 (414)
T TIGR03219 315 HQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAVGADEE 385 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHH
T ss_conf 75651788999999999987402577446999999999999999999999999999986488856622088
No 38
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=364.44 Aligned_cols=333 Identities=17% Similarity=0.186 Sum_probs=226.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-CEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 97002999979089999999999789859998288555578-36888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL-RTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~-r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
||+ |+||||||+||++|+.|+|.|++|+|+||.+.+.+. .++.|.|+++++|+++|+++.+...+.++..+.+++..
T Consensus 1 ~~k--VlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~l~~~a~~vL~~mGl~d~~~~~~~~~~~~~~~d~~ 78 (372)
T PRK05868 1 MKT--VLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQERKTRIRGASVVDRD 78 (372)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECC
T ss_conf 999--999898889999999998589988999579998889966746869999999878978998615786423999489
Q ss_pred CCCCCCCCCCCC-CHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 765545444345-0222875312011100000000123664798323420565302687178983023201211123530
Q gi|254780842|r 80 DRLITAPDAIFH-SSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgA 158 (384)
+........... ......+. +.+.|.+|.+.|++..+ ......++.+++.+++++++|+++++||++.++|+||||
T Consensus 79 G~~l~~~~~~~~~g~~~~~~~--~~i~R~dL~~~L~~a~~-~~v~~~~g~~v~~i~~~~~~V~V~f~dg~~~~~DlVIGA 155 (372)
T PRK05868 79 GNELSRDTESTPTGGPINSPD--IELLRDDLVELLYGATQ-PTVEYLFDDSISTLQDDGAAVRVTFERAAAREFDLVIGA 155 (372)
T ss_pred CCEEEECCCCCCCCCCCCCCE--EEHHHHHHHHHHHHHCC-CCEEEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEEC
T ss_conf 989875266665567568840--00319999999986345-880999578889999649979999907985786589974
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCC-EEEEEEECHHHHHHHHHHH
Q ss_conf 375432000378733222--2430478764114788611788722787542100012320-1126750756732455322
Q gi|254780842|r 159 DGRNSSVRRQMGYGENKW--SYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENF-SSLVWIMESQEADFYYKLP 235 (384)
Q Consensus 159 DG~~S~vR~~l~~~~~~~--~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~-~~ivw~~~~~~~~~~~~~~ 235 (384)
||+||.||+.+.-+.... .++...-++.+......+....+++.+.....++|..++. ....+.....+.. ....+
T Consensus 156 DGi~S~VR~~~fgp~~~~~~~lg~~~a~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 234 (372)
T PRK05868 156 DGLHSNVRRLVFGPEEQFIKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARDNTEARAALGFMDTELR-IDYRD 234 (372)
T ss_pred CCCCHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEECCCCCC-CCCCC
T ss_conf 78741778875288544201124799999668866776247898569828999977899757999994275335-66556
Q ss_pred HHHHHHHHHHCCCC-------CCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 34678877630675-------46762111022320223343045653794210110011384456532112123899999
Q gi|254780842|r 236 VNEIARRLEQYLYP-------VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLN 308 (384)
Q Consensus 236 ~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~ 308 (384)
.+....++.+.+.. .+..+....+....++.+...++|.+|||+|+|||||+|+|++|||+|+||+||++||+
T Consensus 235 ~~~~~~~l~~~~~~~gw~~~~ll~~~~~~~d~~~~~~~q~~~~~W~~GRVvLlGDAAH~~sP~~GQGa~~Ai~dA~vLA~ 314 (372)
T PRK05868 235 TEAQFAELERRMAEDGWVRAQLLHYMRSAPDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAG 314 (372)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 23358999987420587637898762247635741320214787575989986512201876777999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9852579907999999998679999999999
Q gi|254780842|r 309 LFQSEHMSFRAIGNRYHAMRRGDIIKRIVGT 339 (384)
Q Consensus 309 ~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~ 339 (384)
+|.+...+.+.+|..||+++||.+.+.|+..
T Consensus 315 eL~~~~~d~~~A~~~Ye~~~rp~v~~~q~l~ 345 (372)
T PRK05868 315 ELKAAGDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987799999999999998618999877764
No 39
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=359.13 Aligned_cols=332 Identities=16% Similarity=0.208 Sum_probs=229.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-EEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555783-68887889999998899478886047123418994257655
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLR-TTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLI 83 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r-~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 83 (384)
||+||||||+||++|+.|++.|++|+|+|+.+...+.+ ++.|+|+++++|+++|+++.+...+.+...+.+++..+...
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~G~gI~l~p~a~~~L~~lGl~~~l~~~g~~~~~~~~~~~~G~~i 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPELRPLGVGINLLPHAVRELAELGLLEALDAVGIRTRELVFFNRHGQRI 81 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 89999905899999999997899989993699888785287518799999998789789986277763279996999898
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHC-CC-CCCCCEEEEEECCCCEEEEEEC-----CCCCEEEEEEEE
Q ss_conf 4544434502228753120111000000001236647-98-3234205653026871789830-----232012111235
Q gi|254780842|r 84 TAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD-PL-IHCFDALANEIQIGEEEVTILL-----STGQQIVGQFLI 156 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~-~~-~~~~~~~v~~i~~~~~~v~v~~-----~dg~~i~adlvV 156 (384)
..... ....+++.-.+.++|.+|++.|++.+.+. +. ...++++++.++++++++++++ .+++++++|+||
T Consensus 82 ~~~~~---g~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllV 158 (413)
T PRK07538 82 WSEPR---GLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLI 158 (413)
T ss_pred EECCC---CCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEE
T ss_conf 73346---644578885256509999999999999756996899677898988749952999971578872399848899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEE-EEECCCC-CCCEEEEEECCCCCCCCCCCCCCC-----CEEEEEEE--CHHH
Q ss_conf 3037543200037873322224304787-6411478-861178872278754210001232-----01126750--7567
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALV-LNFQHSM-PHNGRCVEFHKSLGTITQIPLREN-----FSSLVWIM--ESQE 227 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~-~~~~~~~-~~~~~a~~~f~~~G~~a~lP~~~~-----~~~ivw~~--~~~~ 227 (384)
||||+||.||+++........|....++ ..+..+. .............+.+..+|+.++ ...+.|.. ..+.
T Consensus 159 GADGi~S~VR~~l~p~~~~~~~~g~~~wrg~~~~~~~~~~~~~~~~~~~~~~~v~yPi~~~~~~~g~~~~~w~~~~~~~~ 238 (413)
T PRK07538 159 GADGIHSAVRAQLYPDEGPPRWNGVLMWRGVTRAPPFLTGASMVRAGHLTGKLVVYPISEPVDADGLQLINWVAEVRVPD 238 (413)
T ss_pred ECCCCCCHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCC
T ss_conf 88898752457744889995350069999985167667886289981799439999636887777625899999961687
Q ss_pred H------HHHHHHHHHHHHHHHHHCCCCCCC--C-CCCCEEEEEECCCCC-CCHHHHHCCCCEECCCCCCCCCHHHHHHH
Q ss_conf 3------245532234678877630675467--6-211102232022334-30456537942101100113844565321
Q gi|254780842|r 228 A------DFYYKLPVNEIARRLEQYLYPVIG--K-IEVVTDVQIFQLSGM-ISHCFGKKRVVLVGEAAHALPPICGQGLN 297 (384)
Q Consensus 228 ~------~~~~~~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~pl~~~-~~~~~~~~rv~liGDAAH~~~P~~GqG~n 297 (384)
. ......+.+++...+..+..+++. . +...+....||+..+ .+++|.++||+|+|||||+|+|++|||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~li~~~~~~~~~pl~dr~pl~~w~~GRV~LiGDAAH~m~P~~GqGan 318 (413)
T PRK07538 239 TEAPRREDWNRPGRLEDFLPHFAGWRFDWLDVPALIRGAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGAS 318 (413)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCEEECCEEECCCCCCCCCCCEEEEEHHHHHCCCCCCCHHH
T ss_conf 66655211346668999999854678761309999844862454112305667740228999988653158756201787
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1212389999998525799079999999986799999999999
Q gi|254780842|r 298 LSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTD 340 (384)
Q Consensus 298 ~ai~Da~~L~~~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~ 340 (384)
+||+||++|+++|.+. .+.+++|+.||++|+|++.+++..+.
T Consensus 319 ~AieDA~~La~~La~~-~~~~~aL~aYe~~Rrp~~~~vv~~~R 360 (413)
T PRK07538 319 QAILDARALADALAAH-GDPEAALAAYEAERRPATAQIVLANR 360 (413)
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 9999999999998618-99899999999987879999999987
No 40
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=355.80 Aligned_cols=333 Identities=16% Similarity=0.167 Sum_probs=223.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-CC-CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 97002999979089999999999789859998288555-57-83688878899999988994788860471234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-QD-LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~~-~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|.+..|+||||||+||++|++|++.|++|+||||.+.. .. ..++.|+|+++++|+++|+ +.+...+.+.......+.
T Consensus 4 ~~~~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~~~~~~G~gi~l~p~~~~~L~~~G~-~~~~~~~~~~~~~~~~~~ 82 (386)
T PRK07236 4 MSKPRAVVVGGSLGGLFAANLLRRAGWDVDVFERSPTELDGRGGGIVLQPELLRALAFAGV-ELPADIGVPSRERIYLDR 82 (386)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCC-CCHHHCCCCCCCEEEECC
T ss_conf 9999689999368999999999858999899868998678860499729889999997699-564751876564699948
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 57655454443450222875312011100000000123664798323420565302687178983023201211123530
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgA 158 (384)
.+..... ...+. ....+..|.+.|++.+.. ....++++++.++.++++++++++||+++++|+||||
T Consensus 83 ~g~~~~~---------~~~~~--~~~~~~~l~~~l~~~l~~--~~i~~g~~v~~v~~~~~~v~v~~~dG~~~~adlvVGA 149 (386)
T PRK07236 83 DGRVVQR---------QPMPQ--TQTSWNVLYRALRAALPA--EHYHAGEALERVEQDGDRVTAHFADGREETADLLIGA 149 (386)
T ss_pred CCCEEEE---------ECCCC--CCHHHHHHHHHHHHHCCC--CEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEEC
T ss_conf 9978876---------14873--011499999999976899--8899599999999829979999879988776289965
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEC-CCCCCCE--E---EEEECC-CCCCCCCCCCC---------CCCEEEEEE
Q ss_conf 375432000378733222243047876411-4788611--7---887227-87542100012---------320112675
Q gi|254780842|r 159 DGRNSSVRRQMGYGENKWSYPQKALVLNFQ-HSMPHNG--R---CVEFHK-SLGTITQIPLR---------ENFSSLVWI 222 (384)
Q Consensus 159 DG~~S~vR~~l~~~~~~~~y~~~~l~~~~~-~~~~~~~--~---a~~~f~-~~G~~a~lP~~---------~~~~~ivw~ 222 (384)
||+||.||+.+.........+..+..+.+. .+.++.. . .+.++. +.+.+..+|++ +.+++++|+
T Consensus 150 DG~~S~vR~~l~~~~~~~~~g~~~~rg~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~g~~~~~~vw~ 229 (386)
T PRK07236 150 DGGRSAVRAQLLPDVRPTYAGYVAWRGLVDEAALPDEARAALRDRFAFQQGPGELILGYLVPGEDGSTEPGQRRYNWVWY 229 (386)
T ss_pred CCCCCCHHHHHCCCCCCCCCCEEEEEEEEEHHHCCHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf 88775158874789997454658999995368688677775237427996799659999823788863445406889998
Q ss_pred ECHHHHHHHHH-----------------HHHHHHHHHHH----HCCCCCCCCC-CCCEEEEEECCCCCCCHHHHHCCCCE
Q ss_conf 07567324553-----------------22346788776----3067546762-11102232022334304565379421
Q gi|254780842|r 223 MESQEADFYYK-----------------LPVNEIARRLE----QYLYPVIGKI-EVVTDVQIFQLSGMISHCFGKKRVVL 280 (384)
Q Consensus 223 ~~~~~~~~~~~-----------------~~~~~~~~~l~----~~~~~~~~~~-~~~~~~~~~pl~~~~~~~~~~~rv~l 280 (384)
.+....+.+.. ...++..+.+. .++++.+..+ ........+|+....+++|.++||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~gRv~L 309 (386)
T PRK07236 230 RPASAGEELPELLTDRDGTRRPGSLPPGALRDEVLAELRDAAARLLAPTFAELVDATAQPFVQAIFDLEVPRMAFGRVAL 309 (386)
T ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 22683355556541245650114578442578899999999875427899999863875116341310265345688899
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0110011384456532112123899999985257990799999999867999999999999999863
Q gi|254780842|r 281 VGEAAHALPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347 (384)
Q Consensus 281 iGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~ 347 (384)
+|||||+|+|+.|||+|+|||||++|+++|.+...+.+++|+.||++|+|++.+++..+..+.+.+.
T Consensus 310 iGDAAH~m~P~~GQGan~AieDA~~La~~L~~~~~~~~~al~~Ye~~R~pr~~~v~~~sr~~g~~~~ 376 (386)
T PRK07236 310 LGDAAFVARPHTAMGVAKAAGDAVALAEALAAAADDIDAALAAWEAERLAVGAAIVARGRDLGARLM 376 (386)
T ss_pred EEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9765175798510368999999999999998678779999999999999999999999999999985
No 41
>KOG3855 consensus
Probab=100.00 E-value=0 Score=364.15 Aligned_cols=374 Identities=23% Similarity=0.330 Sum_probs=298.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHC----CCEEEEEECC--CCCC--------CCCEEEECHHHHHHHHHCCCHHHHHHC-
Q ss_conf 700299997908999999999978----9859998288--5555--------783688878899999988994788860-
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKK----GFLTALVSPR--SFLQ--------DLRTTMLMGEGIDFLKEINVWDFLQDI- 66 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~----g~~v~iiE~~--~~~~--------~~r~~~l~~~s~~~L~~lGl~~~l~~~- 66 (384)
++|||+||||||+|+++|..|... .++|.++|-. +... ..|+..++|++...++.+|+|+.+...
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHCCHHHHHHHHC
T ss_conf 10778998884477899998624985000014677424675324566676523503127852479887347787765640
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHH--HHHHHCCCCCCCCE-EEEEEC------CC-
Q ss_conf 471234189942576554544434502228753120111000000001--23664798323420-565302------68-
Q gi|254780842|r 67 AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFA--EKISQDPLIHCFDA-LANEIQ------IG- 136 (384)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~--~~~~~~~~~~~~~~-~v~~i~------~~- 136 (384)
..+.+++..+| .. +...+.|.....+. ..++++++..++..|+ +...+..++...+. .+..+. ..
T Consensus 115 ~~~~~~~~v~D---s~-s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~ 189 (481)
T KOG3855 115 YQKFSRMLVWD---SC-SAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKND 189 (481)
T ss_pred CCCCCCEEEEC---CC-CHHHHHHCCCCCCC-CCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCC
T ss_conf 56202435541---41-25563114555666-520366434779988887776414762431145323201234567899
Q ss_pred -CEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC--CCCEEEEEECCCCCCCCCCCCC
Q ss_conf -7178983023201211123530375432000378733222243047876411478--8611788722787542100012
Q gi|254780842|r 137 -EEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSM--PHNGRCVEFHKSLGTITQIPLR 213 (384)
Q Consensus 137 -~~~v~v~~~dg~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~--~~~~~a~~~f~~~G~~a~lP~~ 213 (384)
..-..+++.||..+.+||+|||||.||.||+..+++...+.|.++++|+..+.+. ...+.|||+|.+.||+|++|++
T Consensus 190 n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~ 269 (481)
T KOG3855 190 NGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLS 269 (481)
T ss_pred CCCEEEEEECCCCEEEECEEECCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 86537899326845441004045455512132127875543210024667887023356641467754798860524666
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC------------------------C------CCC-------CC
Q ss_conf 3201126750756732455322346788776306754------------------------6------762-------11
Q gi|254780842|r 214 ENFSSLVWIMESQEADFYYKLPVNEIARRLEQYLYPV------------------------I------GKI-------EV 256 (384)
Q Consensus 214 ~~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------~------~~~-------~~ 256 (384)
++-.++||+..++.+..+..+++|.|.+.++..|... + ++. +.
T Consensus 270 d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp~V~~v 349 (481)
T KOG3855 270 DTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPPSVFEV 349 (481)
T ss_pred CCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCHHHCCHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 55220265247778889860892447999877772037772122233555202223068887403754466459717886
Q ss_pred C-EEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHH
Q ss_conf 1-02232022334304565379421011001138445653211212389999998525799079-----99999998679
Q gi|254780842|r 257 V-TDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEHMSFRA-----IGNRYHAMRRG 330 (384)
Q Consensus 257 ~-~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~~~~~~-----~l~~Y~~~R~~ 330 (384)
. ..+..|||...+++.++.+|+.|+|||||.+||.+|||.|+++.|+..|.+.|......+.+ -|..|+.+|.+
T Consensus 350 ~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~ 429 (481)
T KOG3855 350 GDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQ 429 (481)
T ss_pred CCCCEEECCCCCCCHHHHCCCCHHHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 25550425445532877618761421431321465766666777216999999999999721353432330299998765
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
Q ss_conf 99999999999999863679899999999999985083789999998619
Q gi|254780842|r 331 DIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVTPLRHQVMRQSLF 380 (384)
Q Consensus 331 ~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~g 380 (384)
++..+..+++.+.+.|..+.|+...+|.+||.+.++++|+|+.++..+++
T Consensus 430 ~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~ 479 (481)
T KOG3855 430 HNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASK 479 (481)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHC
T ss_conf 14368888889999872259827998534523215653189999988751
No 42
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=2.2e-43 Score=337.53 Aligned_cols=370 Identities=16% Similarity=0.102 Sum_probs=258.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 97002999979089999999999789859998288555---578368887889999998899478886047123418994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL---QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~---~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|+ .+|+||||||+||++|+.|++.|++++|+|+.+.. ...|+..+.+.++++|+++|+++.+...+.+...+.+..
T Consensus 1 mr-t~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~~~~~v~~~~RA~~l~~~tlell~~~Gl~~rl~~~g~~~~g~~l~~ 79 (392)
T PRK08243 1 MR-TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVLGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELAF 79 (392)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
T ss_conf 99-88999997799999999999779988999768997767887653108899999998598878974377356439998
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECC-CCEEEEEEC-CCCC--EEEEE
Q ss_conf 2576554544434502228753120111000000001236647983234205653026-871789830-2320--12111
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQI-GEEEVTILL-STGQ--QIVGQ 153 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~-~~~~v~v~~-~dg~--~i~ad 153 (384)
. +.... ..+..-..+... .+.++..+.+.|.++..+.+....++.+.+.++. +.+...|++ .||+ +++||
T Consensus 80 ~-g~~~r---id~~~l~~g~~~--~~y~Q~ev~~~L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~~dG~~~~l~a~ 153 (392)
T PRK08243 80 D-GRRHR---IDLTELTGGRSV--TVYGQTEVTRDLMAAREAAGGPIVFEASDVALHDFDGDRPYVTYTKDGETHRIDCD 153 (392)
T ss_pred C-CEEEE---ECCCCCCCCCCE--EECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 9-97766---055446889610--33581899999999999769979990599999956998259999449937999984
Q ss_pred EEEEECCCCCCCCCCCCCCC---CCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC-CCCCEEEEEEECHHHHH
Q ss_conf 23530375432000378733---222243047876411478861178872278754210001-23201126750756732
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGE---NKWSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPL-RENFSSLVWIMESQEAD 229 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~---~~~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~-~~~~~~ivw~~~~~~~~ 229 (384)
|||||||.+|.+|+.+.... ....|+..|+......+..+....| ......+++++. +.+...+.+.++++ +
T Consensus 154 yvVGcDG~~S~vR~~ip~~~~~~~~~~yp~~wlgilad~pp~~~eliy--~~~~~gfal~~~r~~~~~R~y~q~~~~--~ 229 (392)
T PRK08243 154 FIAGCDGFHGVSRQSIPADALREFERVYPFGWLGILADAPPVSDELIY--ANHERGFALCSMRSPTRSRYYLQCPLD--D 229 (392)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEEE--EECCCCEEEEEECCCCCEEEEEEECCC--C
T ss_conf 675168898752011156665022343043304578426998760698--787983799970389800899980899--9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCC---CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 45532234678877630675467621---110223202233430456537942101100113844565321121238999
Q gi|254780842|r 230 FYYKLPVNEIARRLEQYLYPVIGKIE---VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIIL 306 (384)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L 306 (384)
....++++.+.+++...+++..+... ++.+...+|+...+++.|.+|||+|+|||||.++|++|||||+||+||.+|
T Consensus 230 ~~e~~~de~~~~eL~~rl~~~~~~~l~~g~~~~~sv~~lrs~vae~~r~GRvfLaGDAAHi~pP~GgqGmN~gi~DA~nL 309 (392)
T PRK08243 230 KVEDWSDERFWDELRRRLPADDAERLVTGPSIEKSIAPLRSFVAEPMQFGRLFLAGDAAHIVPPTGAKGLNLAASDVRYL 309 (392)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEEECCEEEEEEEEHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 82327746689999975173224400235534566620565500866538899996100327840344675899999999
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 99985257-9907999999998679999999999999998636---798999999999999850837899999986198
Q gi|254780842|r 307 LNLFQSEH-MSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS---RYPLLQILRAGTFHLLKRVTPLRHQVMRQSLFL 381 (384)
Q Consensus 307 ~~~l~~~~-~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~---~~~~~~~~R~~~l~~~~~~~~lk~~~~~~a~gl 381 (384)
+|+|.+.. ......|+.|+...-.++.+.+.++..++.+++. .+++-..++..-|..+-.++-..+.++.+-.||
T Consensus 310 awkLaa~l~~~~~~~ld~Ys~~~l~rvw~~~~fs~~~t~~~h~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~a~~y~g~ 388 (392)
T PRK08243 310 SRALVEFYREGDTDGLDAYSATALARVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYVTSSRAAATSLAENYVGL 388 (392)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEECCHHHHHHHHHHCCCC
T ss_conf 9999999842986777787799999999999988999997346989984899999984611227899999999866499
No 43
>KOG2614 consensus
Probab=100.00 E-value=1.3e-37 Score=295.14 Aligned_cols=352 Identities=21% Similarity=0.245 Sum_probs=203.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 029999790899999999997898599982885555-7836888788999999889947888604712341899425765
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRL 82 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (384)
-+|+||||||+||++|++|+|.|++|.|+|++..++ +.+.+.|.-+++++|+.+|+-+.+...+.|+......+..++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~ 82 (420)
T KOG2614 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGK 82 (420)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 74899888389899999998758748998621465558841121442899998726189999716755652643147887
Q ss_pred CCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCC-----EEEEEECCCCEEEEEECCCCCEEEEEEEEE
Q ss_conf 545444345022287531201110000000012366479832342-----056530268717898302320121112353
Q gi|254780842|r 83 ITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFD-----ALANEIQIGEEEVTILLSTGQQIVGQFLIG 157 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~-----~~v~~i~~~~~~v~v~~~dg~~i~adlvVg 157 (384)
........+..+. .--++.|..+...|.++.+ .+++.+.. .....++.......+.++||.++++|++||
T Consensus 83 ~~~~~~~~~~~~~----i~r~~~r~ll~~lL~~a~~-~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dllig 157 (420)
T KOG2614 83 EVSRILYGEPDEY----ILRINRRNLLQELLAEALP-TGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIG 157 (420)
T ss_pred EEEECCCCCCHHH----HHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCEEEECCCCCCEECCCCCEEEEEEEEE
T ss_conf 5674015883577----7788899999999973168-8715512110011344231000344430127874787408997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEE-EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCE----------EEEEEECHH
Q ss_conf 037543200037873322224304787-641147886117887227875421000123201----------126750756
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALV-LNFQHSMPHNGRCVEFHKSLGTITQIPLRENFS----------SLVWIMESQ 226 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~-~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~----------~ivw~~~~~ 226 (384)
|||++|.||++++....+.++.|.+.- +.+....+....-+ ....+.+-.-|.+.... ...|..+.+
T Consensus 158 CDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~~~~~vf--~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~ 235 (420)
T KOG2614 158 CDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIPFGKKVF--AIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFD 235 (420)
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCEE--CCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 575288998873546876036787740012337887544400--234881797556884389887405774421246767
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCE-----EEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHH
Q ss_conf 7324553223467887763067546762--1110-----22320223343045653794210110011384456532112
Q gi|254780842|r 227 EADFYYKLPVNEIARRLEQYLYPVIGKI--EVVT-----DVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLS 299 (384)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~-----~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~a 299 (384)
+.+.+.+ ...+..+.+.+.+++.+..+ +.+. .+..||+ ..-+..+++|+|+|||||+|.|+.|||+|+|
T Consensus 236 e~~~l~~-~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~---i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a 311 (420)
T KOG2614 236 EPEKLKK-TSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPL---ISVKCSPGNVVLLGDAAHAMTPFLGQGGNCA 311 (420)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHCCCCCE---EEECCCCCEEEEECCCCCCCCCCCCCCCCCH
T ss_conf 7778756-48999887677689998756847766242331697672---5211687718996343133687666554324
Q ss_pred HHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHH--HHHHHHH
Q ss_conf 12389999998525799-----------------0799999999867999999999999999863-67989--9999999
Q gi|254780842|r 300 MRDVIILLNLFQSEHMS-----------------FRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF-SRYPL--LQILRAG 359 (384)
Q Consensus 300 i~Da~~L~~~l~~~~~~-----------------~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~R~~ 359 (384)
+||+.+|+++|.++.++ .+.+...|..+|+.+......-+ .+..++. +.+|+ ...+|+.
T Consensus 312 ~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~-~l~gi~~~s~~~l~~m~~F~d~ 390 (420)
T KOG2614 312 FEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDA-YLVGILPQSFGPLYLMVSFRDI 390 (420)
T ss_pred HHHHHHHHHHHHHHCCCHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-EEEEECCCCCCCHHHCCCHHHH
T ss_conf 788999999999860312005650110541367899999988998888776421020-1567515655513431402330
Q ss_pred HH-HHHHHC
Q ss_conf 99-998508
Q gi|254780842|r 360 TF-HLLKRV 367 (384)
Q Consensus 360 ~l-~~~~~~ 367 (384)
.+ ..+.+.
T Consensus 391 ~ys~~l~~~ 399 (420)
T KOG2614 391 IYSEALERL 399 (420)
T ss_pred HHHHHHHHH
T ss_conf 699999999
No 44
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=3.8e-32 Score=254.95 Aligned_cols=319 Identities=15% Similarity=0.151 Sum_probs=214.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCC-EEEECHHHHHHHHHCCC--HHHHHHCCCCCCCEEE
Q ss_conf 9700299997908999999999978--98599982885555783-68887889999998899--4788860471234189
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQDLR-TTMLMGEGIDFLKEINV--WDFLQDIAEPVSSFRL 75 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~~r-~~~l~~~s~~~L~~lGl--~~~l~~~~~~~~~~~~ 75 (384)
|| |+||||||+||.+|+++++. +++|+|+|+++.-...+ +..++..++..|+..+- .+.+.+.....+.+.+
T Consensus 1 Mk---I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVVfsD~tL~~l~~~Dp~s~~~i~~~f~~Wddi~v 77 (770)
T PRK08255 1 MR---IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIEV 77 (770)
T ss_pred CE---EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEE
T ss_conf 94---999778758999999998658999747984279999524468747266645554399999999997478636699
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEE
Q ss_conf 94257655454443450222875312011100000000123664798323420565302687178983023201211123
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFL 155 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlv 155 (384)
.. .+..... +...| .-|.|..|+++|.+++.+.++...+++.+.+.... .....+|||
T Consensus 78 ~~-~g~~~~~----------~GhgF-~gi~R~~LL~iLq~Ra~~lGV~l~fe~~i~~~~~~----------~~~~daDLV 135 (770)
T PRK08255 78 HF-KGRRIRS----------GGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAF----------ALQYDADLV 135 (770)
T ss_pred EE-CCEEEEE----------CCCEE-EHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHH----------HHCCCCCEE
T ss_conf 96-8907996----------69606-64749999999999999839848932637972101----------110478989
Q ss_pred EEECCCCCCCCCCC----CCCCCCCCCCEEEEEEEECCCCCCCEEEE-EECCCCCCCC--CCCCCCCCEEEEEEECHHHH
Q ss_conf 53037543200037----87332222430478764114788611788-7227875421--00012320112675075673
Q gi|254780842|r 156 IGSDGRNSSVRRQM----GYGENKWSYPQKALVLNFQHSMPHNGRCV-EFHKSLGTIT--QIPLRENFSSLVWIMESQEA 228 (384)
Q Consensus 156 VgADG~~S~vR~~l----~~~~~~~~y~~~~l~~~~~~~~~~~~~a~-~~f~~~G~~a--~lP~~~~~~~ivw~~~~~~~ 228 (384)
|+|||+||.+|+.. +....... + .+++.. +...-+...+ -.-++.|.+. .+|..++.+.++.-++++..
T Consensus 136 VaaDG~NS~vR~~~~~~F~p~i~~~~-n-~fiWlG--T~~~Fdaftf~F~~T~hG~~~aHaY~y~~~~STfIVE~~~~tw 211 (770)
T PRK08255 136 IASDGLNSRIRSRYADTFQPDIDTRR-C-RFVWLG--THKLFDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVW 211 (770)
T ss_pred EECCCCCHHHHHHHHHHCCCCCCCCC-C-CEEEEC--CCCCCCCCCEEEECCCCEEEEEEEEEECCCCEEEEEECCHHHH
T ss_conf 98787167998865776189614467-7-649706--6865654440022079756999975437996289998788999
Q ss_pred HH--HHHHHHHHHHHHHHHCCCCCCCCCCCCEEE-----EEE-CCCCCCCHHHHHCC----CCEECCCCCCCCCHHHHHH
Q ss_conf 24--553223467887763067546762111022-----320-22334304565379----4210110011384456532
Q gi|254780842|r 229 DF--YYKLPVNEIARRLEQYLYPVIGKIEVVTDV-----QIF-QLSGMISHCFGKKR----VVLVGEAAHALPPICGQGL 296 (384)
Q Consensus 229 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~-pl~~~~~~~~~~~r----v~liGDAAH~~~P~~GqG~ 296 (384)
.. +..++.++-...+++.|.+.++.-..+++. +.| .+....+++|+++| |||+|||||+.|...|+|-
T Consensus 212 ~~~G~d~~s~~es~a~ce~iFa~~L~Gh~Li~N~~~~rgs~W~~Fp~v~~~~W~h~n~~~~vVLlGDAahTAHFSIGSGT 291 (770)
T PRK08255 212 RAAGFDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFPRVICERWVHWNRRVPVVLMGDAAHTAHFSIGSGT 291 (770)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCEEECCCEEECCCCCCEEEEECHHHHCCCCCCCCH
T ss_conf 87176447978899999999998659981334666677763325783631522325887767996031753386677624
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1121238999999852579907999999998679999999999999998636
Q gi|254780842|r 297 NLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS 348 (384)
Q Consensus 297 n~ai~Da~~L~~~l~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~ 348 (384)
.+|||||..|+++|.+...+.+++|..||++||+++.+++.+...-..+|.+
T Consensus 292 kLAmEDAIaLa~~l~~~~~~~~~Al~~Ye~~Rr~~v~~~Q~AA~~S~~WfE~ 343 (770)
T PRK08255 292 KLALEDAIELARCLHEHPGDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN 343 (770)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7789999999999987699889999999986058899999999999999986
No 45
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=100.00 E-value=3.4e-32 Score=255.32 Aligned_cols=367 Identities=17% Similarity=0.167 Sum_probs=257.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC---CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 9700299997908999999999978985999828855---5578368887889999998899478886047123418994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF---LQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~---~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|| ..|+|||||||||.|..+|++.||+.+|+||++. ..-.||+.|-..++++|++.|+-+.....+.+..++.+..
T Consensus 1 Mk-TqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~~dYVlgRIRAGvLE~g~v~LL~~agv~~Rm~~eG~~H~G~~ia~ 79 (393)
T TIGR02360 1 MK-TQVAIIGAGPSGLLLGQLLHKAGIDTVILERKSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGIEIAF 79 (393)
T ss_pred CC-EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 95-17999757735789999998669858997235722343321012357899999987223223453587325654501
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEC---CC-CEEEEEECC-CCC--EE
Q ss_conf 257655454443450222875312011100000000123664798323420565302---68-717898302-320--12
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQ---IG-EEEVTILLS-TGQ--QI 150 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~---~~-~~~v~v~~~-dg~--~i 150 (384)
.+...- +.+.. -.+.... .+.-+..+.+-|+++-++.+...+++..-+.++ .+ +++..||+. ||+ ++
T Consensus 80 ~g~~~r----iDl~~-~tGG~~V-~VYGQTEvtrDL~~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~dG~~~~~ 153 (393)
T TIGR02360 80 DGQRFR----IDLKA-LTGGKTV-MVYGQTEVTRDLYEAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFERDGEEHRI 153 (393)
T ss_pred CCCEEE----CCHHH-HCCCCEE-EEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEE
T ss_conf 782420----00766-0589789-99766157788999998638955641143211265678889525877787917776
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCC-------CCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 1112353037543200037873322-------224304787641147886117887227875421000123201126750
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENK-------WSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIM 223 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~-------~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~ 223 (384)
.||+|.||||-|..-|+.+ |... ++|++-.+... .|+-.--..+-...--||++-+.....|- +|+
T Consensus 154 dCDfIAGCDGFHGvSR~si--P~~~~k~fErVYPFGWLGiLse----tPPv~~ELIY~~h~RGFALCSmRS~~rSR-YY~ 226 (393)
T TIGR02360 154 DCDFIAGCDGFHGVSRASI--PAEVLKEFERVYPFGWLGILSE----TPPVSHELIYSNHERGFALCSMRSETRSR-YYV 226 (393)
T ss_pred EEEEEECCCCCCCCCCCCC--CHHHHHCCCCCCCCCCHHHHCC----CCCCCCCCCCCCCCCCHHHHHHCCCCCCC-EEE
T ss_conf 4026752788868654456--5124111245067620012057----86886444103676302455320365673-588
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf 75673245532234678877630675467621---110223202233430456537942101100113844565321121
Q gi|254780842|r 224 ESQEADFYYKLPVNEIARRLEQYLYPVIGKIE---VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300 (384)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai 300 (384)
...-.+...+|+++.|+++|+.++++...+-. +.-+.++=||...+++-+..||.+|.|||||-+||.++.|+|+|-
T Consensus 227 Q~pL~D~vedWSDd~FW~ELK~Rlp~e~A~~LvTGPSiEKSIAPLRSFV~EPM~yGrLFLaGDAAHIVPPTGAKGLN~AA 306 (393)
T TIGR02360 227 QVPLTDKVEDWSDDRFWEELKRRLPEEAAERLVTGPSIEKSIAPLRSFVAEPMRYGRLFLAGDAAHIVPPTGAKGLNLAA 306 (393)
T ss_pred EECCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 71456887788707789998613786687540567641221167877433865246511104644358887622103488
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 238999999852-579907999999998679999999999999998---6367989999999999998508378999999
Q gi|254780842|r 301 RDVIILLNLFQS-EHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRS---LFSRYPLLQILRAGTFHLLKRVTPLRHQVMR 376 (384)
Q Consensus 301 ~Da~~L~~~l~~-~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~---~~~~~~~~~~~R~~~l~~~~~~~~lk~~~~~ 376 (384)
-|+..|+..|.+ +.....+.++.|...=-.|++|-.+++-+++.+ |-..+.+-..+...=|..+..+.-.-+.++.
T Consensus 307 SD~~yL~~aL~~~Y~~~~~~gi~~YSa~aLaRvWKA~RFSWWmT~lLHRFPd~~~f~~riq~aEl~Y~~~s~aAq~~lAe 386 (393)
T TIGR02360 307 SDVHYLYEALLEHYQEGDSAGIDGYSAKALARVWKAERFSWWMTSLLHRFPDTDEFDARIQQAELEYLLGSEAAQKTLAE 386 (393)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999973022165778899999633322004334665831038896556789999999998400899999986
Q ss_pred HHCCC
Q ss_conf 86198
Q gi|254780842|r 377 QSLFL 381 (384)
Q Consensus 377 ~a~gl 381 (384)
+=-||
T Consensus 387 NYVGL 391 (393)
T TIGR02360 387 NYVGL 391 (393)
T ss_pred CCCCC
T ss_conf 15788
No 46
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=4.3e-27 Score=217.84 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=170.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCEEEECHHHHHHHHHCCCH--HHHHHCCCCCCCEEE
Q ss_conf 0029999790899999999997898599982885555-----783688878899999988994--788860471234189
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-----DLRTTMLMGEGIDFLKEINVW--DFLQDIAEPVSSFRL 75 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-----~~r~~~l~~~s~~~L~~lGl~--~~l~~~~~~~~~~~~ 75 (384)
||||+||||||||+++|..|++. ++|+++|++.+.. .+.+.+|+|++++.|..+++. +++... ..+...+.
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCGG~I~~~a~~~l~~~~~~ip~~~l~~-~~i~~~~~ 78 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN-PQIFAVKT 78 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCC-CEEEEEEE
T ss_conf 99799989788999999998268-98899981356567999887868719728999875067885665015-53787664
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE-CCCCC--EEEE
Q ss_conf 94257655454443450222875312011100000000123664798323420565302687178983-02320--1211
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTIL-LSTGQ--QIVG 152 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~-~~dg~--~i~a 152 (384)
++.... .. . ..+....+++|..+++.|.+.+.+.. ..+.+..+..++..+++++++ .++|+ ++++
T Consensus 79 ~~~~~~-------~~---~-~~~~~yi~~~R~~fD~~L~~~a~~~~-~~~~~~~~~~i~~~~~g~~v~~~~~g~~~~~~a 146 (348)
T PRK11445 79 IDLANS-------LT---R-NYQRSYINIDRHKFDLWLKSLIPASV-EVYHNSLCRKIWREDDGYHVIFRADGWEQHITA 146 (348)
T ss_pred CCCCCC-------CC---C-CCCCEEEECCHHHHHHHHHHHHHHCC-CEEEEEEEEEEEECCCEEEEEEEECCEEEEEEE
T ss_conf 278775-------22---1-35660760559999999999887287-389714899999839807999971890789873
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE-EECC---CCCCCCCCCCCCCCEEEEEEECHHHH
Q ss_conf 1235303754320003787332222430478764114788611788-7227---87542100012320112675075673
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCV-EFHK---SLGTITQIPLRENFSSLVWIMESQEA 228 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~-~~f~---~~G~~a~lP~~~~~~~ivw~~~~~~~ 228 (384)
++||||||+||.||+++........| .++...+.. +++...+ .+|. +++.-+++|- ++..++....+....
T Consensus 147 ~~iIGADGanS~Vrr~l~~~~~~~~~--ia~~~~~~~--~~~~~~~~~~~d~~~~~~Y~WvFPk-~~~~~vG~~~~~~~~ 221 (348)
T PRK11445 147 RYLVGADGANSMVRRHLYPDHQIRKY--VAIQQWFAE--KHPVPFYSCIFDNEITDCYSWSISK-DGYFIFGGAYPMKNG 221 (348)
T ss_pred CEEEECCCCCCHHHHHHCCCCCCCEE--EEEEEEECC--CCCCCCEEEEECCCCCCEEEEEEEC-CCEEEEEEEEECCCH
T ss_conf 78998989775887763544566527--899988527--7777635799658747659999977-983999788754557
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEEEECCCCCCCHHH--HHCCCCEECCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2455322346788776306754676-21110223202233430456--53794210110011384456532112123899
Q gi|254780842|r 229 DFYYKLPVNEIARRLEQYLYPVIGK-IEVVTDVQIFQLSGMISHCF--GKKRVVLVGEAAHALPPICGQGLNLSMRDVII 305 (384)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~pl~~~~~~~~--~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~ 305 (384)
... .+.+.+.+.. +.-..++ +.........|. . ...+ .++||+|+||||+.+.|+.|.|.-.||+.+..
T Consensus 222 ~~~----~~~~~~~l~~-~g~~~~~~i~~e~~~i~~P~--~-~~~~~~g~~~v~LvGDAAG~V~P~sGEGIyyAm~SGrl 293 (348)
T PRK11445 222 RER----FETLKEKLSA-FGFQFGKAVKTEACTVLRPS--R-WQDFVCGKDNAFLIGEAAGFISASSLEGISYALDSARI 293 (348)
T ss_pred HHH----HHHHHHHHHH-HCCCCCCEEEECCCCCCCCC--C-CCCCCCCCCCEEEEEEHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 999----9999999986-06545866664165367887--6-43342488999999812024585451219999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999985257990799999999
Q gi|254780842|r 306 LLNLFQSEHMSFRAIGNRYHA 326 (384)
Q Consensus 306 L~~~l~~~~~~~~~~l~~Y~~ 326 (384)
+++.|.+...+. ...|.+
T Consensus 294 aAeaI~~~~~~~---~~~~~~ 311 (348)
T PRK11445 294 LREVLNKQPEKL---NTAYWR 311 (348)
T ss_pred HHHHHHHHHHCC---HHHHHH
T ss_conf 999999877551---456778
No 47
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.96 E-value=3.7e-26 Score=210.99 Aligned_cols=310 Identities=17% Similarity=0.147 Sum_probs=191.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCE-EEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 9700299997908999999999978985999828855557-836-88878899999988994788860471234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRT-TMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~-~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|..|||+||||||||+++|..|++.|++|+|+|+.+.+.. ..+ ..+++..++-| ....... ....+....++..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~-i~~~v~~~~~~~~ 76 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEE-IERKVTGARIYFP 76 (396)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH---CCCCHHH-HEEEEEEEEEECC
T ss_conf 94788999897889999999998579929999657889998767666787788774---5552133-2133202699715
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-CEEEEEEEEE
Q ss_conf 576554544434502228753120111000000001236647983234205653026871789830232-0121112353
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-QQIVGQFLIG 157 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-~~i~adlvVg 157 (384)
.. ...+.... ..+|+++|..+++.|.+.+.+.+.....+.++..+..+++++.+....+ .++++++||+
T Consensus 77 ~~------~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~ 146 (396)
T COG0644 77 GE------KVAIEVPV----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVID 146 (396)
T ss_pred CC------EEEEECCC----CCEEEEEHHHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEE
T ss_conf 74------26874488----857998889988999999998398998187889999817816999956866996189998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEE-EEEEEECCCCCC--CEEEEEE--CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHH
Q ss_conf 037543200037873322224304-787641147886--1178872--27875421000123201126750756732455
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQK-ALVLNFQHSMPH--NGRCVEF--HKSLGTITQIPLRENFSSLVWIMESQEADFYY 232 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~-~l~~~~~~~~~~--~~~a~~~--f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~ 232 (384)
|||++|.++++++.. ...+.... +..-.+..+.+. ....+.. ..+.|.-+++|.+++..++-....... ...
T Consensus 147 AdG~~~~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~~~~~~~-~~~- 223 (396)
T COG0644 147 ADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-PSL- 223 (396)
T ss_pred CCCCCHHHHHHHCCC-CCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEEEEEECCC-CCC-
T ss_conf 848576889872887-77874368999999827988750589983366678857999988997599999996477-664-
Q ss_pred HHHHHHHHHHHHHCCC--CC-C-CCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3223467887763067--54-6-762111022320223343045653794210110011384456532112123899999
Q gi|254780842|r 233 KLPVNEIARRLEQYLY--PV-I-GKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLN 308 (384)
Q Consensus 233 ~~~~~~~~~~l~~~~~--~~-~-~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~ 308 (384)
.... +..+.+....+ .. . +.+.... ....|........++.+|++++||||-...|+.|.|+..||..+..+++
T Consensus 224 ~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~-~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aae 301 (396)
T COG0644 224 SPFL-ELLERFKEHPAIRKLLLGGKILEYA-AGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAE 301 (396)
T ss_pred CHHH-HHHHHHHHCCCCCHHCCCCCEEEEE-EEEEECCCCCCCCEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 3369-9999986164430002576177530-0054137755562052898999846667488655773999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 985257990799999999867
Q gi|254780842|r 309 LFQSEHMSFRAIGNRYHAMRR 329 (384)
Q Consensus 309 ~l~~~~~~~~~~l~~Y~~~R~ 329 (384)
.+.+....+...|..|++..+
T Consensus 302 ~i~~~~~~~~~~l~~Y~~~~~ 322 (396)
T COG0644 302 AIAEALEGGEEALAEYERLLR 322 (396)
T ss_pred HHHHHHHCCHHHHHHHHHHHH
T ss_conf 998642224467999999998
No 48
>KOG1298 consensus
Probab=99.95 E-value=1.1e-26 Score=214.93 Aligned_cols=360 Identities=18% Similarity=0.211 Sum_probs=242.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCEEEECHHHHHHHHHCCCHHHHHHC-CCCCCCEEEEECCC
Q ss_conf 00299997908999999999978985999828855557-83688878899999988994788860-47123418994257
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-LRTTMLMGEGIDFLKEINVWDFLQDI-AEPVSSFRLVDITD 80 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-~r~~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~~~~~~~~~ 80 (384)
.+||+|||||.+|.++|..|+|.|-+|.|+||.-..+| .-+..++|.+...|.+||+.|.++.+ ++++.++.++. .+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk-~g 123 (509)
T KOG1298 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK-DG 123 (509)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHCCCCEEEEEEEEEE-CC
T ss_conf 54479988862278999998507857999963455616788776085066899870878776320223752269984-79
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE---EEEEECCCCC--EEEEEEE
Q ss_conf 6554544434502228753120111000000001236647983234205653026871---7898302320--1211123
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE---EVTILLSTGQ--QIVGQFL 155 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~---~v~v~~~dg~--~i~adlv 155 (384)
+....+. ...++..+.-|-..++..+.+.|++++...+|+.+....|.++-++++ +|+...+.|+ +..|.|-
T Consensus 124 k~v~~py---P~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298 124 KEVDLPY---PLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred CEEECCC---CCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEEECCCCCEEEEECCEE
T ss_conf 3553357---7767888743201223699999999872489708861027878731685975898627885578735558
Q ss_pred EEECCCCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHH
Q ss_conf 53037543200037873322--2243047876411478861178872278754210001232011267507567324553
Q gi|254780842|r 156 IGSDGRNSSVRRQMGYGENK--WSYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYK 233 (384)
Q Consensus 156 VgADG~~S~vR~~l~~~~~~--~~y~~~~l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~~~~ 233 (384)
|.|||..|+.|+.+.-+... .+|--..+..|-+.+.|+. ..-++.+..|+.++|++.....++.-++.++.-.+.+
T Consensus 201 vVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~N~~l~~p~h--ghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~ 278 (509)
T KOG1298 201 VVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLKNCRLPAPNH--GHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIAN 278 (509)
T ss_pred EEECCHHHHHHHHHCCCCCCCCCHHEEEEEECCCCCCCCCC--CEEEECCCCCEEEEEECCHHEEEEEECCCCCCCCCCC
T ss_conf 99412568889874487645330231244522788899876--0289548873799970641138998447544896421
Q ss_pred HHHHHH-HHHHHHCCCCCCCCC--CCC--EEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 223467-887763067546762--111--022320223343045653794210110011384456532112123899999
Q gi|254780842|r 234 LPVNEI-ARRLEQYLYPVIGKI--EVV--TDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLN 308 (384)
Q Consensus 234 ~~~~~~-~~~l~~~~~~~~~~~--~~~--~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~ 308 (384)
-.-+.+ .+.+....|+.+.+. +.+ +.....|-+...+...-+.+++|+|||...-||+.|-||..++.|+..|.+
T Consensus 279 gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ 358 (509)
T KOG1298 279 GEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRR 358 (509)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf 36899998740767877788999988643533107423499975787765997320036687347755764457999999
Q ss_pred HHHCC--CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCH
Q ss_conf 98525--7990799---9999998679999999999999998636-79899999999999985083
Q gi|254780842|r 309 LFQSE--HMSFRAI---GNRYHAMRRGDIIKRIVGTDLFNRSLFS-RYPLLQILRAGTFHLLKRVT 368 (384)
Q Consensus 309 ~l~~~--~~~~~~~---l~~Y~~~R~~~~~~~~~~~~~l~~~~~~-~~~~~~~~R~~~l~~~~~~~ 368 (384)
.|+.- ..+.+.+ ++.|...||+-...+-.....|+++|.. .+...+-+|..++..+.+-.
T Consensus 359 ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG 424 (509)
T KOG1298 359 LLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGG 424 (509)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 756666533489999999877876364557799999999999607866899999999999984278
No 49
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.95 E-value=8.8e-25 Score=200.90 Aligned_cols=318 Identities=17% Similarity=0.160 Sum_probs=187.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CEEEECHHHHHHHHHC--CCHHHHHHCCCCCCCEEEEE
Q ss_conf 7002999979089999999999789859998288555578--3688878899999988--99478886047123418994
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL--RTTMLMGEGIDFLKEI--NVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~--r~~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~~~~~~ 77 (384)
.+|||+||||||||+++|+.|+|.|.+|+|+||.+++... .+..+.|.++ +++ +.++. .+.-.++..-+++-
T Consensus 4 ~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~sG~~l~~~~l---~~liP~~~~~-aP~er~V~~~~~~~ 79 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHIIPGFADS-APVERLITHEKLAF 79 (428)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCHH---HHHCCCCHHC-CCCCEEEEEEEEEE
T ss_conf 7577899996889999999998789909999678889987611754052068---8868784102-98624789868999
Q ss_pred CCCCCCCCCCCCCCCHH-CCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 25765545444345022-28753120111000000001236647983234205653026871789830232012111235
Q gi|254780842|r 78 ITDRLITAPDAIFHSSE-IGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLI 156 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~-~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvV 156 (384)
....... ...+...+ ...+..+|+|.|..+++.|.+++.+.+...+.+.++.++..+++.++-...+|++++|++||
T Consensus 80 l~~~~~~--~~~~~~~~~~~~~~~~y~V~R~~FD~wLa~~Ae~aGA~i~~g~~V~~li~~~GrVvGV~~~G~~i~A~vVI 157 (428)
T PRK10157 80 MTEKSAM--TMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred ECCCCCE--ECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCEEEEEEEE
T ss_conf 8689845--56777877566887618989999999999999980988986858100143489799997589589871799
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEE--ECCC----------CCCCEEEEEECC--CCCC--CCCCCCCCCCEEEE
Q ss_conf 303754320003787332222430478764--1147----------886117887227--8754--21000123201126
Q gi|254780842|r 157 GSDGRNSSVRRQMGYGENKWSYPQKALVLN--FQHS----------MPHNGRCVEFHK--SLGT--ITQIPLRENFSSLV 220 (384)
Q Consensus 157 gADG~~S~vR~~l~~~~~~~~y~~~~l~~~--~~~~----------~~~~~~a~~~f~--~~G~--~a~lP~~~~~~~iv 220 (384)
+|||+||.+.+++|+.....+ .+.++-.. ++.+ ...++.++.+.. ..|. -++++.+++..++-
T Consensus 158 ~AdGv~s~la~~~Gl~~~~~p-~~~~~gvKE~~~lp~~~i~~rf~l~~~eG~~~~~~G~~~~g~~GgGflytn~~~vsiG 236 (428)
T PRK10157 158 LADGVNSILAEKLGMAKRVKP-TDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLG 236 (428)
T ss_pred EECCCHHHHHHHHCCCCCCCC-CCEEEEEEEEEECCHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCEEEEE
T ss_conf 944721777987288877887-4128999999964976643320557888759983568878986328997589708998
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCE-EEEEECCC-CCCCHHHHHCCCCEECCCCCCCCC--HHHH
Q ss_conf 75075673245532234678877630--675467621110-22320223-343045653794210110011384--4565
Q gi|254780842|r 221 WIMESQEADFYYKLPVNEIARRLEQY--LYPVIGKIEVVT-DVQIFQLS-GMISHCFGKKRVVLVGEAAHALPP--ICGQ 294 (384)
Q Consensus 221 w~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~pl~-~~~~~~~~~~rv~liGDAAH~~~P--~~Gq 294 (384)
....-+.... ...++.++++.+.++ +.+.+..-+.+. ..+.-|-. ....++.+.++++|+||||..+.| +.+.
T Consensus 237 ~v~~l~~~~~-~~~~~~~~le~fk~hP~i~~ll~gg~~iey~a~~ipegG~~~~P~l~~dG~llvGDAAG~v~n~~~~~~ 315 (428)
T PRK10157 237 LVCGLHHLHD-AKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIR 315 (428)
T ss_pred EEEEHHHCCC-CCCCHHHHHHHHHHCCCHHHHCCCCEEEEEEEEECCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCH
T ss_conf 8851221454-457979999988529505652589779887336627765456884853998999707777567675222
Q ss_pred HHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q ss_conf 3211212389999998525---79907999999998
Q gi|254780842|r 295 GLNLSMRDVIILLNLFQSE---HMSFRAIGNRYHAM 327 (384)
Q Consensus 295 G~n~ai~Da~~L~~~l~~~---~~~~~~~l~~Y~~~ 327 (384)
|+++||+....-|+.+.++ +......|..|++.
T Consensus 316 Gi~~Am~SG~lAAeai~~A~~~~d~S~~~L~~Y~~~ 351 (428)
T PRK10157 316 GMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQH 351 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 199999999999999999997399767889999999
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=99.94 E-value=8e-26 Score=208.53 Aligned_cols=295 Identities=20% Similarity=0.202 Sum_probs=187.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--C-CEEEECHHHHHHHHHCCCHH-HHHH-----CCCCCC---
Q ss_conf 0299997908999999999978985999828855557--8-36888788999999889947-8886-----047123---
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD--L-RTTMLMGEGIDFLKEINVWD-FLQD-----IAEPVS--- 71 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~--~-r~~~l~~~s~~~L~~lGl~~-~l~~-----~~~~~~--- 71 (384)
|||+||||||||+++|..|++.|++|++|||+.++.. . ++.+|++.....|...+--+ .|.+ ......
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~~~~~~~~~~~d~~~L~~~P~~~~~~~~~~~~ 80 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPRVLEELVLPGPDEYALKDIPKELIVNEVRTLF 80 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEE
T ss_conf 93899827746899999999569738898504507988600577667001311367888861301477434542001100
Q ss_pred -CEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCC----
Q ss_conf -418994257655454443450222875312011100000000123664798323420565302687178983023----
Q gi|254780842|r 72 -SFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLST---- 146 (384)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~d---- 146 (384)
.-+++...+.. .. ....+......+++|+|..+++.|.+.+.+.+...+.++.+.++.+.+ .++++..+
T Consensus 81 ~~~~~~~~~~~~-~~----~~~~~~~~~~~~~v~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~dd~ 154 (343)
T TIGR02032 81 NGARIISPNGDK-VE----IPIEELAFTEEAYVIDRDAFDEFLAERAQEAGAELRLGTTVLDVEIED-KVVVEVRGGDDE 154 (343)
T ss_pred CCCEEEECCCCE-EE----ECCHHHCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCEEEEEEECC-CEEEEEECCCCC
T ss_conf 143388078632-21----022211247437898526741899999975780675263761127618-368997268675
Q ss_pred -CCEEEEEEEEEECCCCCCCCC-CCC----CCCCCCCCCEEE--EEEEECCC--CC-CCEEEE---EE-CC---CCCCCC
Q ss_conf -201211123530375432000-378----733222243047--87641147--88-611788---72-27---875421
Q gi|254780842|r 147 -GQQIVGQFLIGSDGRNSSVRR-QMG----YGENKWSYPQKA--LVLNFQHS--MP-HNGRCV---EF-HK---SLGTIT 208 (384)
Q Consensus 147 -g~~i~adlvVgADG~~S~vR~-~l~----~~~~~~~y~~~~--l~~~~~~~--~~-~~~~a~---~~-f~---~~G~~a 208 (384)
+.++.|++||+|||.+|.+++ .++ ..... ++.+.+ +...+..+ .+ +++... .. .. +.|+.+
T Consensus 155 ~~~~~~a~~vigADG~~S~~~~~~lg~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~D~v~v~~~~~~~qrv~ggY~W 233 (343)
T TIGR02032 155 SKGEVTAKIVIGADGARSIVAKKKLGSSATLRENK-EKRELGVALRAEVEMPVEEEVDEDFVEVYIDRGLSQRVPGGYGW 233 (343)
T ss_pred CCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCC-CHHHEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCCEEE
T ss_conf 66046255899716887843212478778777775-41202455467730676762357458999788013323787068
Q ss_pred CCCCCCCCEEEEEEECH--HHHHHHHHHHHHHHHHHHHHCCC---CCCCC--CCCCEEEEEEC---CCCCC-CHHHHHCC
Q ss_conf 00012320112675075--67324553223467887763067---54676--21110223202---23343-04565379
Q gi|254780842|r 209 QIPLRENFSSLVWIMES--QEADFYYKLPVNEIARRLEQYLY---PVIGK--IEVVTDVQIFQ---LSGMI-SHCFGKKR 277 (384)
Q Consensus 209 ~lP~~~~~~~ivw~~~~--~~~~~~~~~~~~~~~~~l~~~~~---~~~~~--~~~~~~~~~~p---l~~~~-~~~~~~~r 277 (384)
.+|.++...++-....+ ..+.+. .+..+.++++.+.++ +.+.. ..... ....+ +.... ..+.+++|
T Consensus 234 ~FP~G~~~~nvG~g~~~~~~~~~~~--~~~~~~l~~f~~~~~~~~~~l~~~D~~~~~-~~~~~~WliP~~~~~~~~~~~~ 310 (343)
T TIGR02032 234 VFPKGDGTANVGVGSLPETDAAEEG--EDLKKYLKDFLAARPVAKEDLKNEDAVEVE-VIGAPKWLIPIRRPDEKLVRGN 310 (343)
T ss_pred EECCCCCEEEEEEEECCCCCCCCCC--CCHHHHHHHHHHHCCCCHHHHHCCCCCCCC-CCCCCEEEEECCCCCCCCCCCC
T ss_conf 8548886899998753651123355--667899999999648861365304770000-0133134541486322113488
Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4210110011384456532112123899999
Q gi|254780842|r 278 VVLVGEAAHALPPICGQGLNLSMRDVIILLN 308 (384)
Q Consensus 278 v~liGDAAH~~~P~~GqG~n~ai~Da~~L~~ 308 (384)
++|+||||..+.|+.|-|+-.||.-+..-++
T Consensus 311 ~ll~GDAAg~V~P~~GgGI~yA~~~G~~Aa~ 341 (343)
T TIGR02032 311 VLLVGDAAGFVKPLTGGGIYYAMRAGRVAAE 341 (343)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 8999337672267556717899999998621
No 51
>PRK10015 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-23 Score=192.32 Aligned_cols=319 Identities=16% Similarity=0.159 Sum_probs=178.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 700299997908999999999978985999828855557--836888788999999889947888604712341899425
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD--LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~--~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
.+|||+||||||||+++|+.|+|.|++|+|+||.+++.. ..+..+.+.+++-|-- +.++. .+.-.++..-+++-..
T Consensus 4 e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgvl~~~~le~liP-~~~~~-aP~er~V~~~~~~~l~ 81 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAAS-APVERKVTREKISFLT 81 (429)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECHHHHHHHCC-CCCCC-CCCCEEEEEEEEEEEC
T ss_conf 615889999688999999999877991999967887998551263741627888688-96447-9852158987899987
Q ss_pred CCCCCCCCCCCCCHHCCCC-CCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE-EECCCCCEEEEEEEEE
Q ss_conf 7655454443450222875-3120111000000001236647983234205653026871789-8302320121112353
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLD-AFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVT-ILLSTGQQIVGQFLIG 157 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~-v~~~dg~~i~adlvVg 157 (384)
+.. .....+...+...+ .-+|+|.|..+++-|.+++.+.+...+.+..+.++..+++.|. |... +++++|++||+
T Consensus 82 ~~~--~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~tg-~~~l~A~vVI~ 158 (429)
T PRK10015 82 EES--AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAG-DDILEANVVIL 158 (429)
T ss_pred CCC--CEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECC-CCEEEEEEEEE
T ss_conf 898--066676567867667786598999999999999997599997795899999629989999879-82688658998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEE----EEECCCC--------CCCEEEEEECCC--CCC--CCCCCCCCCCEEEEE
Q ss_conf 037543200037873322224304787----6411478--------861178872278--754--210001232011267
Q gi|254780842|r 158 SDGRNSSVRRQMGYGENKWSYPQKALV----LNFQHSM--------PHNGRCVEFHKS--LGT--ITQIPLRENFSSLVW 221 (384)
Q Consensus 158 ADG~~S~vR~~l~~~~~~~~y~~~~l~----~~~~~~~--------~~~~~a~~~f~~--~G~--~a~lP~~~~~~~ivw 221 (384)
|||+||.+.+++|+.....+ .+.++- ..+..+. .+++.+|.+... .|. -+++...++..++-.
T Consensus 159 AdGvns~la~~lgl~~~~~p-~~~~lgvKEv~~l~~~~ie~rf~l~~~~G~~~~~~G~~~~~~~GgGflYtn~d~vSiG~ 237 (429)
T PRK10015 159 ADGVNSMLGRSLGMVPASDP-HHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGL 237 (429)
T ss_pred ECCCCHHHHHHHCCCCCCCH-HHCCEEEEEEEECCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 15622799998199988995-46106899985179767321036455677288716888889875168861897589999
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCE-EEEEECCC-CCCCHHHHHCCCCEECCCCCCC-C-CHHHHH
Q ss_conf 5075673245532234678877630--675467621110-22320223-3430456537942101100113-8-445653
Q gi|254780842|r 222 IMESQEADFYYKLPVNEIARRLEQY--LYPVIGKIEVVT-DVQIFQLS-GMISHCFGKKRVVLVGEAAHAL-P-PICGQG 295 (384)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~-~~~~~pl~-~~~~~~~~~~rv~liGDAAH~~-~-P~~GqG 295 (384)
...-.+... ...++.+..+.+..+ +.+.+..-+.+. ..+.-|-. ....++.+.++++|+||||.-+ + |+.+.|
T Consensus 238 v~~l~d~~~-~~~~~~~~le~fK~hP~i~~ll~gG~~~eY~A~~IpeGG~~~iPkl~~dG~llvGDAAGfv~n~~~~~~G 316 (429)
T PRK10015 238 VCGLGDIAH-AQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRG 316 (429)
T ss_pred EEECCCCCC-CCCCHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 985343234-6889799999986393134552698798862543587875578752259869995176775687742211
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q ss_conf 211212389999998525---79907999999998
Q gi|254780842|r 296 LNLSMRDVIILLNLFQSE---HMSFRAIGNRYHAM 327 (384)
Q Consensus 296 ~n~ai~Da~~L~~~l~~~---~~~~~~~l~~Y~~~ 327 (384)
+++||+....-++.+.++ +......|+.|++.
T Consensus 317 i~~Am~SG~lAAeai~~A~~~~d~s~~~L~~Y~~~ 351 (429)
T PRK10015 317 MDLAIASAQAAATTVIAAKERADFSASSLAQYKRE 351 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 79999999999999999997089861029999999
No 52
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.93 E-value=2e-25 Score=205.62 Aligned_cols=328 Identities=17% Similarity=0.172 Sum_probs=212.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 02999979089999999999789859998288555578368887889999998899478886047123418994257655
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLI 83 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 83 (384)
|||+||||||+|.++|..|++.|++|++|||+=..-.+.+++|.|.- .+++++-+++-. .++..++++..+++.+
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGGAIPp~l---i~EFdiP~~li~--~r~~~~~miSP~Gq~~ 75 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGGAIPPCL---IEEFDIPDDLID--RRVRKARMISPSGQEI 75 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCCCCCHHH---CCCCCCCHHHHH--HHHCEEEEECCCCCCE
T ss_conf 96789816850689999998649748863024326588888665110---123578888997--3200646777788610
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE----EEEEECC--CCC--------E
Q ss_conf 4544434502228753120111000000001236647983234205653026871----7898302--320--------1
Q gi|254780842|r 84 TAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE----EVTILLS--TGQ--------Q 149 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~----~v~v~~~--dg~--------~ 149 (384)
........ ....++.| ||.|..|+.-|++++.+.+.. +.+..+..++.+.+ .+++++. ||+ +
T Consensus 76 ~v~~~~~~--P~~~~yVG-MVrREvFD~~LReRA~kaGAe-~~~g~f~~~~~d~~GWds~~~~~~~~~~G~k~ag~~~~~ 151 (408)
T TIGR02023 76 AVEIKVDI--PVEDGYVG-MVRREVFDEYLRERAQKAGAE-LIEGLFKKLERDEDGWDSRVTLQYREKDGKKEAGEEKKS 151 (408)
T ss_pred ECCCEEEC--CCCCCEEE-EEEHHHCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 02420243--65886677-755144157899998762147-665675520156777755258998767775125677773
Q ss_pred EEEEEEEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEE--ECCCCC-----CCEEEEEECC----CCCCCCCCCCCCCCE
Q ss_conf 21112353037543200-03787332222430478764--114788-----6117887227----875421000123201
Q gi|254780842|r 150 IVGQFLIGSDGRNSSVR-RQMGYGENKWSYPQKALVLN--FQHSMP-----HNGRCVEFHK----SLGTITQIPLRENFS 217 (384)
Q Consensus 150 i~adlvVgADG~~S~vR-~~l~~~~~~~~y~~~~l~~~--~~~~~~-----~~~~a~~~f~----~~G~~a~lP~~~~~~ 217 (384)
+++++||||||++|.|. +.++.+..- . .++-+. |+.... .+..+--|+. |+-+-+++|-.+ +.
T Consensus 152 v~~~~VIGADGA~S~vAR~~~~~~~~~---~-~viA~qEri~~p~~~~~~y~e~~~d~~~~g~VSPDFYgW~FPk~d-H~ 226 (408)
T TIGR02023 152 VEADVVIGADGANSKVARKELGLPDNL---P-KVIAYQERIKLPDESKMKYYEELADVYYDGEVSPDFYGWVFPKGD-HI 226 (408)
T ss_pred EEEEEEEECCCCCCHHHHHHCCCCCCH---H-HEEEHHHEECCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCCCC-EE
T ss_conf 789887604478865889718758860---2-302011200488865657788779999888048642302068877-78
Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCC-CCEECCCCCCCCCHHHHHH
Q ss_conf 126750756732455322346788776306754676211102232022334304565379-4210110011384456532
Q gi|254780842|r 218 SLVWIMESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKR-VVLVGEAAHALPPICGQGL 296 (384)
Q Consensus 218 ~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~r-v~liGDAAH~~~P~~GqG~ 296 (384)
++ -+.+.. .+..+-.++...+....++.+-.++.+- ...-|+.....++|..+| |+|+||||-.+.|..|.|.
T Consensus 227 av-G~Gt~P----~h~~d~K~~~~~lr~~~GD~L~~~~tir-~EaapIPm~Pr~~~~~~r~~~L~GDAAG~V~~~SGEGI 300 (408)
T TIGR02023 227 AV-GTGTEP----THGFDIKQLQAALRRRAGDKLDGGKTIR-REAAPIPMKPRPRWDSGRDVVLVGDAAGLVTPASGEGI 300 (408)
T ss_pred EE-ECCCCC----CCHHHHHHHHHHHHHHHHHHHHCCCCCH-HCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCHH
T ss_conf 88-327885----6427899999999987302656183010-02676775544100058866998134663344376168
Q ss_pred HHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 11212389999998525799-----07999999998679999999999999998636798
Q gi|254780842|r 297 NLSMRDVIILLNLFQSEHMS-----FRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYP 351 (384)
Q Consensus 297 n~ai~Da~~L~~~l~~~~~~-----~~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 351 (384)
=-|+.....-|+.+.+.... ....|+.|++.....=..+.+.-+.|+.+|=.+++
T Consensus 301 Y~Am~sG~~aA~a~~E~l~~Gkk~~~a~~L~~y~~~f~K~y~~~f~~L~~LQ~~~Yrsd~ 360 (408)
T TIGR02023 301 YFAMKSGKMAAEAIVEALQSGKKAIDATDLRKYEKKFMKLYGTTFRVLRVLQKVYYRSDR 360 (408)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 887631078999999998445325244644789999876315043466777432138872
No 53
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=99.85 E-value=5.6e-20 Score=165.62 Aligned_cols=318 Identities=17% Similarity=0.180 Sum_probs=199.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
|+||||||||.++|-.|++.|++..++||+.....+.+++|. +-.++++.+-.++-+ .++.+++++..++-....
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGAIP---LCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~~d~ 77 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGAIP---LCMVDEFDLPRDIID--RRVTKMKMISPSNIAVDI 77 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC---CCCCCHHCCCHHHHH--CCCCEEEEECCCCHHHHH
T ss_conf 889748974168999998503104633205678877888644---120101037866751--211022421641013320
Q ss_pred CCCCCCCHHCC-CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE----EEEEE--CCCCC--------EE
Q ss_conf 44434502228-753120111000000001236647983234205653026871----78983--02320--------12
Q gi|254780842|r 86 PDAIFHSSEIG-LDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE----EVTIL--LSTGQ--------QI 150 (384)
Q Consensus 86 ~~~~~~~~~~~-~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~----~v~v~--~~dg~--------~i 150 (384)
.. -.. .+++| ++.|..|+..|++.+.+.+.. +.+..+.+++.-.+ ..+++ -+||+ ++
T Consensus 78 gr------~L~~~~yIg-M~RREVLDsflR~RA~~~GA~-li~Glv~~l~~P~~p~~~PY~lHY~~~Dg~~G~~g~~~~l 149 (401)
T TIGR02028 78 GR------TLKEHEYIG-MVRREVLDSFLRERAADAGAT-LINGLVLKLELPADPADDPYTLHYVEEDGKGGASGTKKTL 149 (401)
T ss_pred HC------CCCCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EECCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 00------278876125-145788889999999864881-4144457631778887787178987006875876454068
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEE-----EC-----CCCCCCCCCCCCCCCEEE-
Q ss_conf 1112353037543200037873322224304787641147886117887-----22-----787542100012320112-
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGRCVE-----FH-----KSLGTITQIPLRENFSSL- 219 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~a~~-----~f-----~~~G~~a~lP~~~~~~~i- 219 (384)
+-|.||||||+||+|.+.++-. ||+ +|+.+.=+...|.+..+|. .+ .|+-+-+++|--|+ ..+
T Consensus 150 EVD~VIGADGANSRvAk~idAG----DY~-~AIAfQERIRlPde~MaYY~dLAEMYVGdDVSPDFYgWVFPK~DH-VAVG 223 (401)
T TIGR02028 150 EVDAVIGADGANSRVAKEIDAG----DYD-YAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDH-VAVG 223 (401)
T ss_pred EEEEEECCCCCCCHHHCCCCCC----CHH-HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCE-EEEC
T ss_conf 8877870787520231113788----523-444433203687011234664333200788686634010677364-7733
Q ss_pred EEE--ECHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHH
Q ss_conf 675--07567324553223467887763067546-762111022320223343045653794210110011384456532
Q gi|254780842|r 220 VWI--MESQEADFYYKLPVNEIARRLEQYLYPVI-GKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGL 296 (384)
Q Consensus 220 vw~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~ 296 (384)
.-+ ..++++++++.-.. ..-.. ... |+ +-.+...|+..+.-++=..+||.|+||||-.++=-.|.|.
T Consensus 224 TGTvk~~K~~Ik~lQ~g~R----~RA~~---K~~GG~---iirVEAHPIPEHPRPRRv~~RVALVGDAAG~VTkcSGEGI 293 (401)
T TIGR02028 224 TGTVKAAKDEIKKLQSGIR----ARAAD---KVAGGK---IIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGI 293 (401)
T ss_pred CCEEEECCHHHHHHHHHHH----HHHHH---HHCCCE---EEEEECCCCCCCCCCCEECCEEEEEECCCCCEEECCCCHH
T ss_conf 5314505078899988887----87886---604880---8998134775424885001205776336675350036505
Q ss_pred HHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 112123899999985257990-----79999999986799999999999999986367989
Q gi|254780842|r 297 NLSMRDVIILLNLFQSEHMSF-----RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPL 352 (384)
Q Consensus 297 n~ai~Da~~L~~~l~~~~~~~-----~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~ 352 (384)
=.|-+.+..-++.+.+..... +..++.|-+.+=..-.-....-|.|+++|-..|+.
T Consensus 294 YFAAkSgR~Ca~a~~~~~~~g~~~~~~g~~~~YL~rWD~~y~~Ty~~LDlLQrVFYrs~a~ 354 (401)
T TIGR02028 294 YFAAKSGRLCAEAIVEESRLGKKVTEEGDLKKYLKRWDKEYRPTYRVLDLLQRVFYRSNAA 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 4665444568899886430364013467889998876553142656666776543278840
No 54
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.82 E-value=2.2e-17 Score=146.63 Aligned_cols=277 Identities=15% Similarity=0.147 Sum_probs=168.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCC--CCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 299997908999999999978--9859998288555--578368887889999998899478886047123418994257
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFL--QDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~--~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
||+|||||+|||++|..|.+. +.+|+++|+.+.. ...++..... ..++-++.+... ......+.....
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~------~~~~~~~~~~~~--~W~~~~v~~~~~ 72 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEF------EDLGPLAPCVEH--SWPGYEVRFPDG 72 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCC------CCCCCHHHHHHC--EECCEEEEECCC
T ss_conf 989999529999999999740899819999789888889983854571------787775777645--879679992899
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG 160 (384)
.. .. .. .+ + .+|...++.+.+.+.+.+++++ +.+..+..+...++.+.+.+++|+.++|++|+.|.|
T Consensus 73 ~~------~l--~~--~~-Y-~~i~s~~f~~~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~ 139 (374)
T pfam05834 73 RR------KL--IG--RG-Y-GRVSSDRLHEELLRRCAENGVI-RLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARG 139 (374)
T ss_pred CE------EE--CC--CC-C-EEEEHHHHHHHHHHHHHHCCCE-EECCEEEEEECCCCCEEEEECCCCEEEEEEEEECCC
T ss_conf 74------76--68--87-0-7988899999999998657969-991377897537870599926995874449994787
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC--EEEEE-EC----CCCCC--CCCCCCCCCCEEEEEEECHHHHHHH
Q ss_conf 5432000378733222243047876411478861--17887-22----78754--2100012320112675075673245
Q gi|254780842|r 161 RNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHN--GRCVE-FH----KSLGT--ITQIPLRENFSSLVWIMESQEADFY 231 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~--~~a~~-~f----~~~G~--~a~lP~~~~~~~ivw~~~~~~~~~~ 231 (384)
..+.-... ..-|+++-..++++.|.. +.+.- =| ..+|+ +-+||+++++.-+=++.-...
T Consensus 140 ~~~~~~~~--------~l~Q~F~G~~I~t~~~~fd~~~~~lMDfr~~q~~~g~~F~YvLP~s~~~aLVE~T~fs~~---- 207 (374)
T pfam05834 140 ASPSGALT--------VGYQTFYGVEVEVDNPPHDPDVPVIMDARVPQPAKGYRFLYVLPLSPTRLLIEDTCYADG---- 207 (374)
T ss_pred CCCCCCCC--------CEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCC----
T ss_conf 66778888--------614899999999689978887259998326666676189999754898599998753367----
Q ss_pred HHHHHHHHHHHHHHCCCCC-CCCCC-CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5322346788776306754-67621-110223202233430456537942101100113844565321121238999999
Q gi|254780842|r 232 YKLPVNEIARRLEQYLYPV-IGKIE-VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNL 309 (384)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~ 309 (384)
..++.+++.+.+..++... +..-+ ...+....|+.......-...|++-+|.||+.++|.+|..++.+.+.|..+++.
T Consensus 208 ~~l~~~~~~~~i~~yl~~~gi~~~~i~~~E~GviPm~~~~~~~~~~~~ii~iG~agG~~~psTGYsf~~~~~~a~~ia~~ 287 (374)
T pfam05834 208 PALPFDALKQRLMDYARALGWRILEVEREEQGVIPMTLGGDLPATWQKVLRIGAAAGLVHPSTGYSVPRALALAPAIAAI 287 (374)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999729985237754889988866888655687762223243788887036299999989999987
Q ss_pred HHCCC
Q ss_conf 85257
Q gi|254780842|r 310 FQSEH 314 (384)
Q Consensus 310 l~~~~ 314 (384)
+....
T Consensus 288 l~~~~ 292 (374)
T pfam05834 288 LRLSS 292 (374)
T ss_pred HHCCC
T ss_conf 64278
No 55
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=99.77 E-value=2.4e-15 Score=131.63 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=187.3
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHH--HHHC-CCCCCCEEEEECC
Q ss_conf 99997908999999999978---9859998288555578368887889999998899478--8860-4712341899425
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDF--LQDI-AEPVSSFRLVDIT 79 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~--l~~~-~~~~~~~~~~~~~ 79 (384)
|+|||||.||.++|..|++. +++|+|||..+.+.-.-+.+-.|.-..+|+.+|+-+. ++.. ++.-.+++..+..
T Consensus 2 IvIvGGGTAGWmtA~~L~~~~~~~~~ItlIES~~i~~iGVGE~T~p~~~~~l~~lGI~e~~fm~~~~AT~K~Gi~F~nW~ 81 (457)
T pfam04820 2 IVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVGVGEATIPSIRTFNRMLGIDEAEFMRATQATFKLGIRFEDWG 81 (457)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEECCEEECCCC
T ss_conf 89989879999999999986599987999967999987845763799999999839998999997398877837831868
Q ss_pred CCC--CCCCCCC---------CC-------------------------------C------HHCCCCCCCCHHHHCCHHH
Q ss_conf 765--5454443---------45-------------------------------0------2228753120111000000
Q gi|254780842|r 80 DRL--ITAPDAI---------FH-------------------------------S------SEIGLDAFGYNIPNHVLME 111 (384)
Q Consensus 80 ~~~--~~~~~~~---------~~-------------------------------~------~~~~~~~~g~~i~r~~L~~ 111 (384)
... ...+... +. . .....-.++|.+....+-+
T Consensus 82 ~~~~~y~hpF~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~yayHfDA~k~~~ 161 (457)
T pfam04820 82 RRGERYIHPFGVTGHPIDGVPFHHYWLRLRARGFAGPLDDYCLPAVAALAGKFSPPPKDPRSGLSGLSYAYHFDAALYAR 161 (457)
T ss_pred CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHHH
T ss_conf 89982483576778775667527999986524778987887699999984699988777666566766468727999999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEE--EEEECCCCCEEEEEEEEEECCCCCCCCCC-CCCCCCCCC---CCEEEEEE
Q ss_conf 0012366479832342056530268717--89830232012111235303754320003-787332222---43047876
Q gi|254780842|r 112 SFAEKISQDPLIHCFDALANEIQIGEEE--VTILLSTGQQIVGQFLIGSDGRNSSVRRQ-MGYGENKWS---YPQKALVL 185 (384)
Q Consensus 112 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~--v~v~~~dg~~i~adlvVgADG~~S~vR~~-l~~~~~~~~---y~~~~l~~ 185 (384)
.|.+.+.+. .|.+....|++++.++++ ..|.+++|+++++||.|.|.|-+|.+-.+ ++.++..++ ...+|+++
T Consensus 162 ~Lr~~a~~~-GV~~i~~~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTGF~~lLi~~~l~~~~~s~s~~L~~d~Ava~ 240 (457)
T pfam04820 162 FLRRNAEAR-GVTRVEGKVVDVQLDADGFVTSLRLEDGREVEADLFIDCSGFRGLLIEQALKTGYEDWSDWLPCDRALAV 240 (457)
T ss_pred HHHHHHHHC-CCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 999988857-9889984787999889996789996789888764899778741100001359985157560656732566
Q ss_pred EECCCCCCCEEEEEECCCCCCCCCCCCCCCCEE-EEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEC
Q ss_conf 411478861178872278754210001232011-2675075673245532234678877630675467621110223202
Q gi|254780842|r 186 NFQHSMPHNGRCVEFHKSLGTITQIPLRENFSS-LVWIMESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQ 264 (384)
Q Consensus 186 ~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~-ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 264 (384)
.+..+.+......-.=.+.|-++-+|+.+...+ .|+ +.+. .++++-.+++.++++..... +....+
T Consensus 241 ~~~~~~~~~pyT~atA~~~GW~W~IPL~~R~G~GYVy--ss~~------~s~e~A~~el~~~~~~~~~~-----~~r~i~ 307 (457)
T pfam04820 241 QCESVGPPEPYTRATAHDAGWRWRIPLQHRLGNGYVY--SSAH------ADDDEALAELLANLGGIPLA-----EPRLIR 307 (457)
T ss_pred ECCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEE--CCCC------CCHHHHHHHHHHHCCCCCCC-----CCCEEE
T ss_conf 3576789975035564048736864257653017996--3898------99899999999862876446-----775230
Q ss_pred CCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 233430456537942101100113844565321121238999999852579907999999998
Q gi|254780842|r 265 LSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAM 327 (384)
Q Consensus 265 l~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~~~~~~~l~~Y~~~ 327 (384)
+..-+.++.=.+||+.||.|+.-+-|+-+-|+-+....+..|.+.+... ...+...++|.+.
T Consensus 308 f~~G~~~~~W~kNcvaiGLsagFiEPLEsT~i~l~~~~i~~l~~~~p~~-~~~~~~~~~yN~~ 369 (457)
T pfam04820 308 FTTGRRKQAWVKNVVALGLASGFLEPLESTSIHLIQSALRRLLALFPDG-GFDPAAIAEYNRR 369 (457)
T ss_pred CCCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHH
T ss_conf 0067400044688899831025677722222999999999999965778-8887999999999
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=99.64 E-value=5.9e-15 Score=128.73 Aligned_cols=279 Identities=20% Similarity=0.234 Sum_probs=164.3
Q ss_pred EEEEECCCHHHHHHHHHHH--HCCCEEEEEECCCC-CCCCCEEE-----ECHHHHHHHHHCCCHHHHHHCCCCCCC-EEE
Q ss_conf 2999979089999999999--78985999828855-55783688-----878899999988994788860471234-189
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAA--KKGFLTALVSPRSF-LQDLRTTM-----LMGEGIDFLKEINVWDFLQDIAEPVSS-FRL 75 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~--~~g~~v~iiE~~~~-~~~~r~~~-----l~~~s~~~L~~lGl~~~l~~~~~~~~~-~~~ 75 (384)
|++||||||||+++|..|+ +.|++|.+||..+. ..-.-+.. |...+.+.|..+ + .....+ +.+
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg~w~~dl~~~~hawl~~l-----~---~~~W~~~~~y 72 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYGVWDDDLSDLGHAWLADL-----V---EHRWSDAYEY 72 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-----H---CCCCCCEEEE
T ss_conf 9788747757899999999750587189867888767768744212222327899999988-----4---1638980688
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCC-CEEEEEECCCCCEEEEEE
Q ss_conf 9425765545444345022287531201110000000012366479832342056530268-717898302320121112
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIG-EEEVTILLSTGQQIVGQF 154 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~v~v~~~dg~~i~adl 154 (384)
. .++ ...+.+.++. .+.+..|.+.|.+++.+...+.+.+.++..++.+ .....++.++|++|.|.+
T Consensus 73 ~--------~~~---~~~~L~~~Y~--~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~ 139 (419)
T TIGR01790 73 R--------FPE---EPIKLGRAYG--SVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARL 139 (419)
T ss_pred C--------CCC---CCHHCCCCCE--EECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEE
T ss_conf 3--------873---4301056650--00158999999986200376133013566665440551114428973784007
Q ss_pred EEEECCCCC--CCCCCCCCCCCCCCCCEEEEEEEECCC-CCCCEEEEEEC------------CCCCC------CCCCCCC
Q ss_conf 353037543--200037873322224304787641147-88611788722------------78754------2100012
Q gi|254780842|r 155 LIGSDGRNS--SVRRQMGYGENKWSYPQKALVLNFQHS-MPHNGRCVEFH------------KSLGT------ITQIPLR 213 (384)
Q Consensus 155 vVgADG~~S--~vR~~l~~~~~~~~y~~~~l~~~~~~~-~~~~~~a~~~f------------~~~G~------~a~lP~~ 213 (384)
||.|-|..+ .|-....-... . -|.++-..++.+ .||+-..-.+. ..... +-.+|++
T Consensus 140 V~Da~G~~~G~l~~~~~~~~~~--g-~Q~ayG~~~rl~~~P~~~~~~V~MD~r~~~~~~~~~l~~~~sripTFlYampL~ 216 (419)
T TIGR01790 140 VIDARGFKPGKLVQYEKASLAV--G-YQAAYGVEVRLSEPPHGPSSMVIMDYRVDQLKDAPELKGYRSRIPTFLYAMPLS 216 (419)
T ss_pred EEECCCCCCCCEECCCCCCCCC--E-EEEEEEEEEEEECCCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 8832577765101125667642--1-213132778872478799986583115252357853235566676156630589
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCEEEEEECCCCCCCH--HHHHCC---CCEECCCC
Q ss_conf 3201126750756732455322346788776306---754676211102232022334304--565379---42101100
Q gi|254780842|r 214 ENFSSLVWIMESQEADFYYKLPVNEIARRLEQYL---YPVIGKIEVVTDVQIFQLSGMISH--CFGKKR---VVLVGEAA 285 (384)
Q Consensus 214 ~~~~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~pl~~~~~~--~~~~~r---v~liGDAA 285 (384)
.++.- ..++.-++ ...++.+.+.+.+..++ +..++.+. .++...+|+...-.. -|...+ |+.+|=||
T Consensus 217 ~~~~f---~EeT~l~~-~p~l~~~~L~~rl~~rl~~~G~~~~~i~-~eE~~~lP~~~~~p~sa~~~~q~~PGv~~~G~aA 291 (419)
T TIGR01790 217 SDRVF---IEETSLAA-RPALPRDRLKQRLLARLAAQGWQVKEIE-EEEQGLLPVNLPLPSSAYVLEQRIPGVVAFGAAA 291 (419)
T ss_pred CCEEE---EEEEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCCHH-HCCHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf 96478---88510026-8998989999999999984688234003-2001111435578852220689987033100133
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 113844565321121238999999852
Q gi|254780842|r 286 HALPPICGQGLNLSMRDVIILLNLFQS 312 (384)
Q Consensus 286 H~~~P~~GqG~n~ai~Da~~L~~~l~~ 312 (384)
-.+||.+|-=+..++++|-.|+..+..
T Consensus 292 g~vHP~TGY~v~~al~~Ap~~A~~~A~ 318 (419)
T TIGR01790 292 GMVHPATGYSVARALSEAPKLAAAIAQ 318 (419)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 455775111489999987888999997
No 57
>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=99.59 E-value=8.6e-15 Score=127.50 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=139.4
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE--ECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHH
Q ss_conf 111235303754320003787332222430478764--114788611788722787542100012320112675075673
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLN--FQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEA 228 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~--~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~ 228 (384)
.|.|+|.|||..|+.|+.+....... .-+ .+.- ...+.|..+-+.-+..+.+|+-+++++.+...+..-++.+..
T Consensus 1 fApLtvv~DG~~S~fRk~l~~~~~~v--~S~-FvGl~l~~~~lp~p~hGhViL~~~~PvL~YqIs~~etR~Lvdv~~~~l 77 (276)
T pfam08491 1 FAPLTIVCDGCFSKFRKSLSDNKVEV--GSY-FVGLILKNADLPAPNHGHVILGKPSPILLYQISSTETRILCDYPGPKL 77 (276)
T ss_pred CCCEEEEECCCCHHHHHHHCCCCCCE--EEE-EEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 99869981685058788734899963--016-899997178899988048996699868999728983689995378889
Q ss_pred HHHHHHHHHHHHHHHHH----CCCCCCCC-C-C--CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf 24553223467887763----06754676-2-1--110223202233430456537942101100113844565321121
Q gi|254780842|r 229 DFYYKLPVNEIARRLEQ----YLYPVIGK-I-E--VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300 (384)
Q Consensus 229 ~~~~~~~~~~~~~~l~~----~~~~~~~~-~-~--~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai 300 (384)
- ..+..+..+.+.+ .+|+.+.+ + + ..+.....|-+...+....+.+++++|||+..-||++|-||..|+
T Consensus 78 P---s~~ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp~~~~~~~G~illGDA~NmRHPLTGgGMTVal 154 (276)
T pfam08491 78 P---SIANGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVAL 154 (276)
T ss_pred C---CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCEEEEH
T ss_conf 9---8664168999997146679888999999999659924475021888767998789971110588985576667642
Q ss_pred HHHHHHHHHHHCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 238999999852579--90---799999999867999999999999999863679899999999999985083
Q gi|254780842|r 301 RDVIILLNLFQSEHM--SF---RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVT 368 (384)
Q Consensus 301 ~Da~~L~~~l~~~~~--~~---~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~ 368 (384)
.|+..|.+.|..-.. +. .++++.|+.+||+....+-.....++.+|..+++-++.+|...|+.+..-.
T Consensus 155 ~Dvv~L~~lL~~~~dl~d~~~v~~~l~~F~~~Rk~~~s~IN~LA~ALY~lF~a~~~~l~~Lr~gcF~Yf~~GG 227 (276)
T pfam08491 155 NDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRKPYDAVINTLSIALYSLFAADSDELKALRKGCFDYFSLGG 227 (276)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 0899999863778885217999999999988625540879999999999984897799999999999997187
No 58
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.47 E-value=1.5e-11 Score=103.68 Aligned_cols=203 Identities=11% Similarity=0.058 Sum_probs=104.4
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-----CEEEEEEEEEECCCCCC-CCCCCCCCCCCCC
Q ss_conf 11000000001236647983234205653026871789830232-----01211123530375432-0003787332222
Q gi|254780842|r 104 IPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-----QQIVGQFLIGSDGRNSS-VRRQMGYGENKWS 177 (384)
Q Consensus 104 i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-----~~i~adlvVgADG~~S~-vR~~l~~~~~~~~ 177 (384)
+.-..+...|.+.+.+.+...+.++.|..++.+++++.+.+.++ .++++|-||.|-|+.|. +-+++|....-.+
T Consensus 194 ~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS~~L~~~lG~~~Pl~p 273 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGSRQLAAMLGDRVNVYP 273 (410)
T ss_pred ECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCEEE
T ss_conf 35899999999999977999987855899998099899996464233552588304998766663766865388652364
Q ss_pred CCEEEEEEEECCCCCCCEEE-EEECCCCCCCCCCCCCCCCEEEEEEECHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 43047876411478861178-872278754210001232011267507567324-5532234678877630675467621
Q gi|254780842|r 178 YPQKALVLNFQHSMPHNGRC-VEFHKSLGTITQIPLRENFSSLVWIMESQEADF-YYKLPVNEIARRLEQYLYPVIGKIE 255 (384)
Q Consensus 178 y~~~~l~~~~~~~~~~~~~a-~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (384)
-....+...+..+......- .-.....+.+..-|+++++..+.-+......+. ......+.+.+...+.||.. +..+
T Consensus 274 ~rGy~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~lrv~gt~E~~g~d~~~~~~~~~~l~~~a~~~~P~l-~~~~ 352 (410)
T PRK12409 274 VKGYSITVNLDDEASRAAAPWVSLLDESAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPGV-STRR 352 (410)
T ss_pred CCCEEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC-CCCC
T ss_conf 267589985587543346872789727966998625798489626402258889989899999999999978897-7266
Q ss_pred CCEEEEEECCCCCCCHHHHHCCCCEECCCCCC--C--CCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 11022320223343045653794210110011--3--844565321121238999999852579
Q gi|254780842|r 256 VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHA--L--PPICGQGLNLSMRDVIILLNLFQSEHM 315 (384)
Q Consensus 256 ~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~--~--~P~~GqG~n~ai~Da~~L~~~l~~~~~ 315 (384)
.. .+..+ +...-++.=+||-+.|. + .=+.+.|+.+|=--+..+++.+.....
T Consensus 353 ~~-~W~G~-------RP~tpD~lPvIG~~~~~gl~~a~GH~~~G~~lap~tg~lvA~li~g~~P 408 (410)
T PRK12409 353 VV-PWAGL-------RPMMPNMMPRVGRGRRPGVFYNTGHGHLGWTLSAATADLVAQVVQQKLP 408 (410)
T ss_pred CE-EEEEE-------CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 50-62545-------0689998898287899999999788125778999999999999758998
No 59
>PRK11728 hypothetical protein; Provisional
Probab=99.40 E-value=1.3e-11 Score=104.09 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=104.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCC---CCEE-------EECHHHHH---------HH----H
Q ss_conf 9700299997908999999999978--985999828855557---8368-------88788999---------99----9
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQD---LRTT-------MLMGEGID---------FL----K 55 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~---~r~~-------~l~~~s~~---------~L----~ 55 (384)
|. |||+|||||++|+++|..|++. +.+|+|+||.+.+.. .|.. ...|++++ .+ +
T Consensus 1 m~-yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~ 79 (400)
T PRK11728 1 MM-YDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCD 79 (400)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 95-30999996799999999999559998399996899975633532423215643589999999999999999999999
Q ss_pred HCCCHH----------------HHH---HCCC--CCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHH
Q ss_conf 889947----------------888---6047--1234189942576554544434502228753120111000000001
Q gi|254780842|r 56 EINVWD----------------FLQ---DIAE--PVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFA 114 (384)
Q Consensus 56 ~lGl~~----------------~l~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~ 114 (384)
+.|+.- .+. ..+. -+ .++.++...-....|....... .-.+ -.-++.-..+.+.|.
T Consensus 80 ~~~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv-~~~~l~~~ei~~~eP~v~~~~a-l~~p-~tgivD~~~l~~al~ 156 (400)
T PRK11728 80 QHGIPYEVCGKLLVATSELELERMEALYERAAANGI-EVERLDAEELREREPNIRGLGA-IFVP-STGIVDYRAVAEAMA 156 (400)
T ss_pred HCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC-CEEEECHHHHHHHCCCCCCCCE-EECC-CCEEECHHHHHHHHH
T ss_conf 859992116869997799999999999999985698-6289679999986886543235-9768-772778999999999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC-CCCCCCCCCC
Q ss_conf 2366479832342056530268717898302320121112353037543-2000378733
Q gi|254780842|r 115 EKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNS-SVRRQMGYGE 173 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S-~vR~~l~~~~ 173 (384)
+.+.+++....++++|+.++..++++.+.+.+|.+++|++||-|-|.+| .+.+++|.+.
T Consensus 157 ~~a~~~G~~i~~~~~V~~i~~~~~~~~v~t~~~~~i~a~~vINaAGl~Ad~IA~~~G~~~ 216 (400)
T PRK11728 157 ELIQARGGEIRLGAEVTALDEHANGVVVRTSQGGEFEARTLVNCAGLMSDRLAKMLGLEP 216 (400)
T ss_pred HHHHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf 999978989992788989999799999998899889971899866652899999709996
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.38 E-value=2.2e-12 Score=109.85 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=98.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHH----------HHHHHHHCCCHHH-HHHCCCC
Q ss_conf 9700299997908999999999978985999828855557836888788----------9999998899478-8860471
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGE----------GIDFLKEINVWDF-LQDIAEP 69 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~----------s~~~L~~lGl~~~-l~~~~~~ 69 (384)
|+.|||+|||||||||++|+.+++.|.+|+|+|+.+... |-+.++.. --++|.+.+--.+ +...-..
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~G--rKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG--RKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf 974218998887889999998864698799980586422--136853788743326505899997589820677889872
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHH----HHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 23418994257655454443450222875312011----10000000012366479832342056530268717898302
Q gi|254780842|r 70 VSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNI----PNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLS 145 (384)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i----~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~ 145 (384)
.....+++.-... . .....+..|.+. +-..+.++|+.++++.++..+..+.+.+++.+++...+++.
T Consensus 79 ft~~d~i~~~e~~----G-----i~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~ 149 (408)
T COG2081 79 FTPEDFIDWVEGL----G-----IALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS 149 (408)
T ss_pred CCHHHHHHHHHHC----C-----CEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEECC
T ss_conf 7989999999865----9-----715774685255786666899999999999759589814647767633855899859
Q ss_pred CCCEEEEEEEEEECCCCCCC
Q ss_conf 32012111235303754320
Q gi|254780842|r 146 TGQQIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 146 dg~~i~adlvVgADG~~S~v 165 (384)
+|++++||-+|.|-|-.|.=
T Consensus 150 ~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 150 SGETVKCDSLILATGGKSWP 169 (408)
T ss_pred CCCEEECCEEEEECCCCCCC
T ss_conf 99889804899922886778
No 61
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.32 E-value=2.3e-11 Score=102.39 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=97.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC----EEE-----E--CHHHHH-HHHHCCCHHHHHHC-C
Q ss_conf 970029999790899999999997898599982885555783----688-----8--788999-99988994788860-4
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLR----TTM-----L--MGEGID-FLKEINVWDFLQDI-A 67 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r----~~~-----l--~~~s~~-~L~~lGl~~~l~~~-~ 67 (384)
|+ |||+|||||++|+++|..|+++|++|+|+|+.......+ ... . .+.-.. .++...+|+++... +
T Consensus 2 ~r-~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~~g 80 (377)
T PRK11259 2 MR-YDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERETG 80 (377)
T ss_pred CE-EEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 50-48999995299999999999789959999289988654667664206676456787789999999999999998749
Q ss_pred CCC----CCEEEEECCCCCC----------CC-CCCCCCCHHC-------CC---------CCCCCHHHHCCHHHHHHHH
Q ss_conf 712----3418994257655----------45-4443450222-------87---------5312011100000000123
Q gi|254780842|r 68 EPV----SSFRLVDITDRLI----------TA-PDAIFHSSEI-------GL---------DAFGYNIPNHVLMESFAEK 116 (384)
Q Consensus 68 ~~~----~~~~~~~~~~~~~----------~~-~~~~~~~~~~-------~~---------~~~g~~i~r~~L~~~L~~~ 116 (384)
.+. ..+.+.. .+... .. +....+..+. .. +.-|+ +.-..+...|.+.
T Consensus 81 ~~~~~~~G~l~~a~-~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G~-v~p~~~~~al~~~ 158 (377)
T PRK11259 81 EPLFVQTGVLNLGP-ADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSGF-LRPELAIKAHLRL 158 (377)
T ss_pred CCEEEEECCEEECC-CHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCCE-ECHHHHHHHHHHH
T ss_conf 75287507489738-779999999999997699809958999998677657898779999589826-7499999999999
Q ss_pred HHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC-CCCCCCCCC
Q ss_conf 664798323420565302687178983023201211123530375432-000378733
Q gi|254780842|r 117 ISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS-VRRQMGYGE 173 (384)
Q Consensus 117 ~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~-vR~~l~~~~ 173 (384)
+++.+...+.++.|..++.++++++|++++|+ ++||.||-|-|+.|. +-..++++.
T Consensus 159 a~~~G~~i~~~~~V~~i~~~~~~v~V~T~~G~-i~A~~VV~AaGaws~~l~~~~~~pl 215 (377)
T PRK11259 159 AREAGAELLFNEPVTAIEHDDDGVTVTTADGT-YSAKKLVVSAGTWVKELLPELGLPV 215 (377)
T ss_pred HHHCCCCEEECEEEEEEEECCCEEEEEECCCE-EECCEEEECCCHHHHHHHHHCCCCC
T ss_conf 99749965813488867874998999808947-9979799975651787886559971
No 62
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.31 E-value=5.7e-11 Score=99.44 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=102.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCC------CCCEEE--E--CHHHHHH-HHHCCC--HHHH-H
Q ss_conf 97002999979089999999999789--8599982885555------783688--8--7889999-998899--4788-8
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQ------DLRTTM--L--MGEGIDF-LKEINV--WDFL-Q 64 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~------~~r~~~--l--~~~s~~~-L~~lGl--~~~l-~ 64 (384)
|+.|||+|||||+.|+++|..|++.+ ++|.|+||.+... +..++. + .|.+..+ |...|- |..+ +
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98322999897389899999999738896599997057653334567653442554489855133999999999999999
Q ss_pred HCCCC---CCCEEEE---------------------------ECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHH
Q ss_conf 60471---2341899---------------------------42576554544434502228753120111000000001
Q gi|254780842|r 65 DIAEP---VSSFRLV---------------------------DITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFA 114 (384)
Q Consensus 65 ~~~~~---~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~ 114 (384)
....| +.++-+. +...-....|.......-.-.-+-+.+|.-..+...|.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCEECHHHHHHHHH
T ss_conf 84986123680899978277899999999886579861442699999862965443651468757775076899999999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCEE-EEEECCCCCE-EEEEEEEEECCCCC-CCCCCCCCCC
Q ss_conf 2366479832342056530268717-8983023201-21112353037543-2000378733
Q gi|254780842|r 115 EKISQDPLIHCFDALANEIQIGEEE-VTILLSTGQQ-IVGQFLIGSDGRNS-SVRRQMGYGE 173 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~-i~adlvVgADG~~S-~vR~~l~~~~ 173 (384)
+.+.+++....++++|..++..+++ ..+.+.+|++ ++|++||.|=|..| .+.+..|++.
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 99997697899348364789927965999834796789956899897451799999728986
No 63
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.30 E-value=9.5e-10 Score=90.47 Aligned_cols=195 Identities=10% Similarity=0.051 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE-EECCCCCEEEEEEEEEECCCCCCC-CCCCCCCCCCCCCCEEEEEE
Q ss_conf 0000001236647983234205653026871789-830232012111235303754320-00378733222243047876
Q gi|254780842|r 108 VLMESFAEKISQDPLIHCFDALANEIQIGEEEVT-ILLSTGQQIVGQFLIGSDGRNSSV-RRQMGYGENKWSYPQKALVL 185 (384)
Q Consensus 108 ~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~-v~~~dg~~i~adlvVgADG~~S~v-R~~l~~~~~~~~y~~~~l~~ 185 (384)
.+...|.+.+.+.+...+.+..|.+++.++++++ |.+++| .++||-||.|-|+.|.- -+.+|....-.+.....+..
T Consensus 202 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~V~t~~g-~i~ad~vV~AaGaws~~l~~~lg~~~pv~p~rGy~l~~ 280 (416)
T PRK00711 202 LFTQRLAALAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGLDLPVYPLKGYSLTV 280 (416)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCC-EEEEEEEEEECCHHHHHHHHHCCCCCCEEECCCEEEEE
T ss_conf 99999999998538862002315899984998998853895-57501699933743699999749976436503159999
Q ss_pred EECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-E
Q ss_conf 411478861178872278754210001232011267507567324-55322346788776306754676211102232-0
Q gi|254780842|r 186 NFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADF-YYKLPVNEIARRLEQYLYPVIGKIEVVTDVQI-F 263 (384)
Q Consensus 186 ~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~ 263 (384)
-+.......... .......++.-+. +++..+--+......+. ......+.+.+.+.+.||. +.+......+.. .
T Consensus 281 ~~~~~~~~p~~~--v~~~~~~~~~~~~-~~~~~igg~~e~~g~d~~~~~~~~~~l~~~~~~~fP~-l~~~~~~~~w~G~r 356 (416)
T PRK00711 281 PITDEDRAPVST--VLDETYKIAITRF-DDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPG-GGDLSQATFWTGLR 356 (416)
T ss_pred ECCCCCCCCEEE--EECCCCEEEEEEC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCEEEEEEE
T ss_conf 877766687457--7638854888502-9978760123557888899989999999999986776-66778777867454
Q ss_pred CCCCCCCHHHHHCCCCEECCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22334304565379421011001----13844565321121238999999852579
Q gi|254780842|r 264 QLSGMISHCFGKKRVVLVGEAAH----ALPPICGQGLNLSMRDVIILLNLFQSEHM 315 (384)
Q Consensus 264 pl~~~~~~~~~~~rv~liGDAAH----~~~P~~GqG~n~ai~Da~~L~~~l~~~~~ 315 (384)
|. ..++.-+||-+-+ ...=++++|+.+|---+..+++.+.....
T Consensus 357 p~--------tpD~~PiiG~~~~~gl~~a~Gh~~~G~~~ap~~g~~lA~li~g~~~ 404 (416)
T PRK00711 357 PM--------TPDGTPIVGATRYKNLFLNTGHGTLGWTMACGSGQLLADLISGRKP 404 (416)
T ss_pred EE--------CCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 14--------7999859734498999999888368999999999999999859979
No 64
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.29 E-value=3.4e-11 Score=101.13 Aligned_cols=152 Identities=19% Similarity=0.213 Sum_probs=87.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCEEEECH--HHHHHHHHCCCHHH-HHHCC---CCC
Q ss_conf 029999790899999999997898599982885555-------783688878--89999998899478-88604---712
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------DLRTTMLMG--EGIDFLKEINVWDF-LQDIA---EPV 70 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------~~r~~~l~~--~s~~~L~~lGl~~~-l~~~~---~~~ 70 (384)
|||+||||||||+++|+.+++.|.+|+|+|+.+.+. ..|+- ++. ..-+++++.+--.+ +...- .+-
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN-~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~ 79 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCN-VTNSVEPDNFLSRYPGNPHFLKSALSRFTPW 79 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCE-ECCCCCHHHHHHHCCCCHHHHHHHHHHCCHH
T ss_conf 979999966999999999986899599995899875015882689614-0789997999862577579999999848999
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEE
Q ss_conf 34189942576554544434502228753120111000000001236647983234205653026871789830232012
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQI 150 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i 150 (384)
+-+..+... .+.+...+.+ .-|...-.-.++.++|.+++++.++....+..|.++..+++++.....+++++
T Consensus 80 d~~~ff~~~-------Gl~~~~e~~G-rvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~~~~~ 151 (405)
T pfam03486 80 DFIAWFEEL-------GVPLKEEDHG-RLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEEL 151 (405)
T ss_pred HHHHHHHHC-------CCEEEECCCC-EEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCEE
T ss_conf 999999977-------9905977899-79789898699999999999977978995888789997599459999489589
Q ss_pred EEEEEEEECCCCCC
Q ss_conf 11123530375432
Q gi|254780842|r 151 VGQFLIGSDGRNSS 164 (384)
Q Consensus 151 ~adlvVgADG~~S~ 164 (384)
+||-||-|-|-.|.
T Consensus 152 ~a~~vIlAtGG~s~ 165 (405)
T pfam03486 152 EADSLVLATGGLSW 165 (405)
T ss_pred EECEEEEECCCCCC
T ss_conf 72789990488665
No 65
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=99.26 E-value=1.9e-10 Score=95.59 Aligned_cols=166 Identities=17% Similarity=0.233 Sum_probs=94.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCE-EEECHH-----H---HH-HHHHCCCHHHHHH-CCCCC-
Q ss_conf 29999790899999999997898599982885555--7836-888788-----9---99-9998899478886-04712-
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRT-TMLMGE-----G---ID-FLKEINVWDFLQD-IAEPV- 70 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~-~~l~~~-----s---~~-~L~~lGl~~~l~~-~~~~~- 70 (384)
||+|||||++|+++|..|++.|++|+|+|+..... ..+. ..+.+. + .+ ....+..|..+.. .+.++
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~gaS~~~~g~i~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLHPGLRKERAPLLARLALESRDLWRELIEELGIDCD 80 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999927999999999997899599994999887504240261645757786189999989999999999875598756
Q ss_pred ----CCEEEEECCCCCC-----------CCCCC-CCCCHHC-------CCC-------CCCCHHHHCCHHHHHHHHHHHC
Q ss_conf ----3418994257655-----------45444-3450222-------875-------3120111000000001236647
Q gi|254780842|r 71 ----SSFRLVDITDRLI-----------TAPDA-IFHSSEI-------GLD-------AFGYNIPNHVLMESFAEKISQD 120 (384)
Q Consensus 71 ----~~~~~~~~~~~~~-----------~~~~~-~~~~~~~-------~~~-------~~g~~i~r~~L~~~L~~~~~~~ 120 (384)
..+.......... ..... ..+..+. ... +-+..+.-..+.+.|.+.+.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~a~~~~~~~~i~p~~~~~~l~~~~~~~ 160 (309)
T pfam01266 81 FRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEAL 160 (309)
T ss_pred EEECCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHHHC
T ss_conf 47646899946989999999999999973996599468887764665677614899975783775124367999999877
Q ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCC-CCCCCC
Q ss_conf 983234205653026871789830232012111235303754320-003787
Q gi|254780842|r 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSV-RRQMGY 171 (384)
Q Consensus 121 ~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~v-R~~l~~ 171 (384)
+...+.++.|.+++..++.++|.+++|+ +++|.||-|-|..|.- ...++.
T Consensus 161 G~~i~~~~~V~~i~~~~~~~~v~t~~g~-i~a~~VV~a~G~~s~~l~~~~~~ 211 (309)
T pfam01266 161 GVEILEGTEVTGLEREGGGVTVETADGE-IRADKVVNAAGAWSDELLRLLGL 211 (309)
T ss_pred CCEEECCCEEEEEEEECCEEEEEECCCE-ECCCEEEECCCHHHHHHHHHCCC
T ss_conf 9699917689999998999999989970-85899999777426888886399
No 66
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.25 E-value=1.1e-09 Score=90.09 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=86.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CEEEECH--------HHHHHHH----HCCCHHHHHHCC
Q ss_conf 02999979089999999999789859998288555578----3688878--------8999999----889947888604
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL----RTTMLMG--------EGIDFLK----EINVWDFLQDIA 67 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~----r~~~l~~--------~s~~~L~----~lGl~~~l~~~~ 67 (384)
=||+||||||+|+++|..|+++|++|+|+|+.+.+... .+..+.| .+.-.+. ..-.|+.+....
T Consensus 257 ~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~~~~ 336 (660)
T PRK01747 257 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEALGV 336 (660)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 71899893899999999999789968999479875655666731267402578997689999999999999999875468
Q ss_pred -C--CCCCEEEEECCCCCCC---------CCC---CCCCCHH-------------CCCCCCCCHHHHCCHHHHHHHHHHH
Q ss_conf -7--1234189942576554---------544---4345022-------------2875312011100000000123664
Q gi|254780842|r 68 -E--PVSSFRLVDITDRLIT---------APD---AIFHSSE-------------IGLDAFGYNIPNHVLMESFAEKISQ 119 (384)
Q Consensus 68 -~--~~~~~~~~~~~~~~~~---------~~~---~~~~~~~-------------~~~~~~g~~i~r~~L~~~L~~~~~~ 119 (384)
. ...+.-.....+.... ... ...+..+ .-.+.-|| +.-..|.+.|++...
T Consensus 337 ~~~~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~-v~P~~l~~aLl~~a~- 414 (660)
T PRK01747 337 AFDHDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARALSAEEAEALAGLPVPCGGIFYPQGGW-LCPAELCRALLAAAG- 414 (660)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCE-ECHHHHHHHHHHHCC-
T ss_conf 644146756995498688999999997469943302479999977529987778378258977-568999999998647-
Q ss_pred CCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 798323420565302687178983023201211123530375432
Q gi|254780842|r 120 DPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 120 ~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
.+...+.+..|..++..++++++.+++++.+++|.||.|-|..|.
T Consensus 415 ~~i~~~~~~~V~~l~~~~~~w~l~~~~~~~~~Ad~VVlA~G~~s~ 459 (660)
T PRK01747 415 QGLTIHFGHEVARLERVDDQWQLDFAGGVLASAPVVVLANGHDAT 459 (660)
T ss_pred CCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCCCHH
T ss_conf 985999274478999749808999689928614679990561011
No 67
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.22 E-value=6.5e-09 Score=84.32 Aligned_cols=59 Identities=32% Similarity=0.347 Sum_probs=44.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCC--------C-----CCE--E-EECHHHHHHHHHCCCHHHH
Q ss_conf 2999979089999999999789--8599982885555--------7-----836--8-8878899999988994788
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQ--------D-----LRT--T-MLMGEGIDFLKEINVWDFL 63 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~--------~-----~r~--~-~l~~~s~~~L~~lGl~~~l 63 (384)
.|+|||||++||++|..|++.| ++|+|+|+++... + .+. . .-.+...++++++|+.+.+
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~t~~~~g~~~e~Gp~~~~~~~~~~~~l~~~lGL~~~~ 78 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIDLGPESFLARKPSAPALIKELGLEDEL 78 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCEEEECCCCCCEECCHHHHHHHHHCCCCCEE
T ss_conf 59999987899999999996497997899988998810388983699999688880223786799999985996345
No 68
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.17 E-value=5.1e-09 Score=85.10 Aligned_cols=246 Identities=14% Similarity=0.187 Sum_probs=119.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHHHHHCCC---HHHHHH------CC-CCC
Q ss_conf 0029999790899999999997898599982885555--78368887889999998899---478886------04-712
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDFLKEINV---WDFLQD------IA-EPV 70 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~L~~lGl---~~~l~~------~~-~~~ 70 (384)
.|||+|||||+.|+.+|.-++.+|++|+++|+.++.. ..|..-|-..++++|+...+ .+.+.. .+ .-+
T Consensus 6 ~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~~~lV~e~l~ER~~l~~~APhlv 85 (503)
T PRK13369 6 DYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHII 85 (503)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 37889999678889999999968994999826875584447642265341665420669999999999999998483412
Q ss_pred CCEEEE-ECC--CCCC------------------CCCCCCCCCHHC-C----CCCC--CC-----HHHHCCHHHHHHHHH
Q ss_conf 341899-425--7655------------------454443450222-8----7531--20-----111000000001236
Q gi|254780842|r 71 SSFRLV-DIT--DRLI------------------TAPDAIFHSSEI-G----LDAF--GY-----NIPNHVLMESFAEKI 117 (384)
Q Consensus 71 ~~~~~~-~~~--~~~~------------------~~~~~~~~~~~~-~----~~~~--g~-----~i~r~~L~~~L~~~~ 117 (384)
..+.+. ... +... ..+....+..+. . .+.+ ++ .+.-..|.-.+...+
T Consensus 86 ~pl~~l~P~~~~~~~~~~~~~Gl~lYd~la~~~~~~~~~~~~~~~~~~~~pl~~~l~~~~~y~D~~~ddaRl~~~~~~~A 165 (503)
T PRK13369 86 WPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKKLPGTRTLDLRRDPEGAPLKPPYRKGFEYSDCWVDDARLVVLNALDA 165 (503)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCHHCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 44726999607755579999789999863386678841001765611106740535569999666265799999999999
Q ss_pred HHCCCCCCCCEEEEEECCCCEEEEEECCC---CC--EEEEEEEEEECCCCC-CC-CCCCCCCCCC-CC-CCEEEEEEEEC
Q ss_conf 64798323420565302687178983023---20--121112353037543-20-0037873322-22-43047876411
Q gi|254780842|r 118 SQDPLIHCFDALANEIQIGEEEVTILLST---GQ--QIVGQFLIGSDGRNS-SV-RRQMGYGENK-WS-YPQKALVLNFQ 188 (384)
Q Consensus 118 ~~~~~~~~~~~~v~~i~~~~~~v~v~~~d---g~--~i~adlvVgADG~~S-~v-R~~l~~~~~~-~~-y~~~~l~~~~~ 188 (384)
.+.+.......+|+++..+++.+.++..| |+ +++|+.||.|-|..+ .+ ++..+..... .. -..+-++..
T Consensus 166 ~~~GA~i~ny~~V~~~~~~g~~~~v~~~d~~tg~~~~v~ak~VVNAtGpW~d~v~~~~~~~~~~~~i~~skG~HlVl~-- 243 (503)
T PRK13369 166 AERGATILTRTRCVSARREGGLWRLETRNSDTGETRTFRARALVNAAGPWVTDVIDRVAGLNSSRNVRLVKGSHIVVP-- 243 (503)
T ss_pred HHCCCHHHHCCEEEEEEEECCEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEEEEEEEE--
T ss_conf 987852330736887786264899999987899589998538998667238999986237787664247740057750--
Q ss_pred CCCCCCEEEEEECCCCCCCC-CCCCCCCCEEEEEEECHH---HHHHH--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 47886117887227875421-000123201126750756---73245--532234678877630675467
Q gi|254780842|r 189 HSMPHNGRCVEFHKSLGTIT-QIPLRENFSSLVWIMESQ---EADFY--YKLPVNEIARRLEQYLYPVIG 252 (384)
Q Consensus 189 ~~~~~~~~a~~~f~~~G~~a-~lP~~~~~~~ivw~~~~~---~~~~~--~~~~~~~~~~~l~~~~~~~~~ 252 (384)
...+ ...+.-+.+++|-+. ++|..++++ ++-+.+.. +.+.. ...+.+.+++.++++|++.+.
T Consensus 244 ~~~~-~~~~~~~~~~DgRviFvlPw~g~~t-liGTTD~~~~~~pd~~~~t~eEidyLL~~~n~~~~~~l~ 311 (503)
T PRK13369 244 KFWD-GAQAYLVQNHDKRVIFANPYEGDFA-LIGTTDIAYEGDPEDVAADEEEIDYLLTAVNRYFKEKLR 311 (503)
T ss_pred CCCC-CCEEEEEECCCCCEEEEEECCCCEE-EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 3147-8638998458985699975259879-993567667688567999999999999999974565588
No 69
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.16 E-value=1.4e-09 Score=89.16 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 000123664798323420565302687178983023201211123530375432000
Q gi|254780842|r 111 ESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 111 ~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~ 167 (384)
+.|.+.+.+.+...+.+.++..++..++++.+++++|+++++|.|+.|-|+..++..
T Consensus 221 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~Vl~a~Gr~pn~~~ 277 (465)
T PRK05249 221 DALSYHFRNSGVVIRHNEEYEKVEGGDDGVILHLKSGKKIKADCLLYANGRTGNTDG 277 (465)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCCCC
T ss_conf 999999998792999798899999608767999479959987089988766667665
No 70
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.11 E-value=9.7e-10 Score=90.41 Aligned_cols=123 Identities=26% Similarity=0.368 Sum_probs=86.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 97002999979089999999999789859998288555578368887889999998899478886047123418994257
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
+..|||+||||||||+++|+..+|+|+++.|++++. . +.+. .. ..+ ..
T Consensus 210 ~~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~----G--Gqv~-------~t----~~I-------eN-------- 257 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI----G--GQVK-------DT----VGI-------EN-------- 257 (515)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----C--CCCE-------EC----CCE-------EE--------
T ss_conf 788888998967899999999997799769992487----7--5313-------03----460-------04--------
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG 160 (384)
..+.+. +.-.+|...+.+++.+.+........+..++..++...+++++|+.++++-||-|.|
T Consensus 258 -------------ypG~~~----i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATG 320 (515)
T TIGR03140 258 -------------LISVPY----TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATG 320 (515)
T ss_pred -------------CCCCCC----CCHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCC
T ss_conf -------------489877----757999999999999749689913369999727981899987998999397999569
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 543200037873322
Q gi|254780842|r 161 RNSSVRRQMGYGENK 175 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~ 175 (384)
++- +.+++|-+.
T Consensus 321 a~~---r~l~vpGE~ 332 (515)
T TIGR03140 321 ARW---RKLGVPGEK 332 (515)
T ss_pred CCC---CCCCCCCHH
T ss_conf 873---558999678
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.09 E-value=9.2e-09 Score=83.23 Aligned_cols=247 Identities=15% Similarity=0.233 Sum_probs=118.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHHHHHCC---CHHHHHH------CC-C
Q ss_conf 970029999790899999999997898599982885555--7836888788999999889---9478886------04-7
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDFLKEIN---VWDFLQD------IA-E 68 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~L~~lG---l~~~l~~------~~-~ 68 (384)
|..|||+|||||+.|+.+|.-++.+|++|+++|+.++.. ..|..-|-..++++|+... +.+.+.. .+ .
T Consensus 4 ~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsrSskLiHGGlRYLe~~~~~lV~Esl~ER~~L~~~APh 83 (503)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMAPH 83 (503)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 77479899997788999999998679969999368756833477544751157777328489999999999999985886
Q ss_pred CCCCEEEEECCCCCC--------------------CC-CCCCCCCHHCCC-----CCC--CCH-----HHHCCHHHHHHH
Q ss_conf 123418994257655--------------------45-444345022287-----531--201-----110000000012
Q gi|254780842|r 69 PVSSFRLVDITDRLI--------------------TA-PDAIFHSSEIGL-----DAF--GYN-----IPNHVLMESFAE 115 (384)
Q Consensus 69 ~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~~~~-----~~~--g~~-----i~r~~L~~~L~~ 115 (384)
-+..+.+.-...... .. +........... +.+ ++. +.-.-|.-.+..
T Consensus 84 lv~pl~f~~P~~~~~~p~~~~~~Gl~lYD~la~~~~~~~~~~l~~~~~~~~~pL~~~l~~~~~Y~D~q~dDaRL~l~~~~ 163 (503)
T PRK12266 84 IIWPMRFVLPHRPHLRPAWMIRLGLFLYDHLGKRKSLPGSRGLDLRRFPAGSPLKPEITRGFEYSDCWVDDARLVVLNAR 163 (503)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHCCCCCCCCHHCCEEEEEEEEEECHHHHHHHHHH
T ss_conf 56322257745777640799987899998753756678511321654113376554236689996337581899999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCEEEEEECCC---CC--EEEEEEEEEECCCC--CCCCCCCCCCCCCC-C-CCEEEEEEE
Q ss_conf 3664798323420565302687178983023---20--12111235303754--32000378733222-2-430478764
Q gi|254780842|r 116 KISQDPLIHCFDALANEIQIGEEEVTILLST---GQ--QIVGQFLIGSDGRN--SSVRRQMGYGENKW-S-YPQKALVLN 186 (384)
Q Consensus 116 ~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~d---g~--~i~adlvVgADG~~--S~vR~~l~~~~~~~-~-y~~~~l~~~ 186 (384)
.+.+.+.......+|+++..+++.+.++..| |+ +++|+.||.|-|.. ...++..+.+.... . ...+-++..
T Consensus 164 ~A~~~GA~v~ny~~v~~~~~~~~~~~v~~~D~~tg~~~~v~ak~VVNAtGpW~d~v~~~~~~~~~~~~i~~~kG~HlVv~ 243 (503)
T PRK12266 164 DAAERGAEILTRTRVVSARREGGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIVVP 243 (503)
T ss_pred HHHHCCCEEECCCEEEEEEECCCEEEEEEEECCCCCEEEEEECEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCEEEEC
T ss_conf 99866876602423788997298899999986899789999277998767107889875237887666014404348851
Q ss_pred ECCCCCCCEEEEEECCCCCCCC-CCCCCCCCEEEEEEECHH---HHHHH--HHHHHHHHHHHHHHCCCCCC
Q ss_conf 1147886117887227875421-000123201126750756---73245--53223467887763067546
Q gi|254780842|r 187 FQHSMPHNGRCVEFHKSLGTIT-QIPLRENFSSLVWIMESQ---EADFY--YKLPVNEIARRLEQYLYPVI 251 (384)
Q Consensus 187 ~~~~~~~~~~a~~~f~~~G~~a-~lP~~~~~~~ivw~~~~~---~~~~~--~~~~~~~~~~~l~~~~~~~~ 251 (384)
-..+ .+.++-+.+++|-+. ++|..++. +++-+.+.+ +.+.. ...+.+.+++.++.+|+..+
T Consensus 244 --~~~~-~~~~~~~~~~DGRv~FviPw~g~~-tliGTTD~~~~~dpd~~~~t~eEidyLL~~~n~~f~~~l 310 (503)
T PRK12266 244 --RLFD-HDQAYILQNPDGRIVFAIPYEDDF-TLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNEYFKKQL 310 (503)
T ss_pred --CCCC-CCCEEEEECCCCCEEEEEECCCCE-EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf --4358-872699854897579998727975-999266777789856788999999999999998626788
No 72
>PRK10262 thioredoxin reductase; Provisional
Probab=99.08 E-value=1.2e-09 Score=89.70 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=76.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 97002999979089999999999789859998288555578368887889999998899478886047123418994257
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
||+|||+|||||||||++|+.|++.|.+++|+|+.+.- + .+.. ..+ +.-+. +
T Consensus 4 ~k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~G---G--~l~~------------------~~~---i~n~p--g 55 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG---G--QLTT------------------TTE---VENWP--G 55 (321)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---C--CCCC------------------CCC---EEECC--C
T ss_conf 60600999997689999999999869967999605968---7--4200------------------560---35617--8
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECC
Q ss_conf 65545444345022287531201110000000012366479832342056530268717898302320121112353037
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG 160 (384)
. ..+ +.-..|.+.+.+.+.+.+.... ...+..++..++..+++.+.| .++++-||-|-|
T Consensus 56 ~----------~~~---------i~G~~l~~~~~~q~~~~~~~i~-~~~v~~i~~~~~~f~v~t~~g-~~~a~aViiAtG 114 (321)
T PRK10262 56 D----------PND---------LTGPLLMERMHEHATKFETEII-FDHINKVDLQNRPFRLTGDSG-EYTCDALIIATG 114 (321)
T ss_pred C----------CCC---------CCHHHHHHHHHHHHHHHCCEEE-ECCCCEEEEECCCEEEECCCC-EEEEEEEEEEEC
T ss_conf 8----------876---------4779999999999997087489-412315774036519975898-899989999646
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 543200037873322
Q gi|254780842|r 161 RNSSVRRQMGYGENK 175 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~ 175 (384)
... +.+++|-..
T Consensus 115 ~~~---r~l~ipge~ 126 (321)
T PRK10262 115 ASA---RYLGLPSEE 126 (321)
T ss_pred CCC---CCCCCCCHH
T ss_conf 865---537999714
No 73
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.07 E-value=1.5e-09 Score=89.04 Aligned_cols=37 Identities=38% Similarity=0.590 Sum_probs=34.4
Q ss_pred CCE-EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 970-0299997908999999999978985999828855
Q gi|254780842|r 1 MNH-FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~-~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++ |||+||||||||+++|+.++|.|.+++|+|+...
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~ 38 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 98447299999568899999999978996799966886
No 74
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=99.07 E-value=2.5e-09 Score=87.41 Aligned_cols=214 Identities=14% Similarity=0.150 Sum_probs=117.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC----CCEEEECHHH---------HH-HHHHCCCHHHHHHCCCCCC
Q ss_conf 99997908999999999978985999828855557----8368887889---------99-9998899478886047123
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD----LRTTMLMGEG---------ID-FLKEINVWDFLQDIAEPVS 71 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~----~r~~~l~~~s---------~~-~L~~lGl~~~l~~~~~~~~ 71 (384)
|+|||||+.||++|..|+++|++|+|+|+.+.... .-++.|+|-+ .+ .++.+-+|+.....-....
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t 80 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT 80 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97845318789999999974993899965860456778866433243266746767478999999997599999987317
Q ss_pred ---------CEEEEECC-------------CCCCCCCCCCCCCHHC--CCCCC------C------CHHHHCCHHHHHHH
Q ss_conf ---------41899425-------------7655454443450222--87531------2------01110000000012
Q gi|254780842|r 72 ---------SFRLVDIT-------------DRLITAPDAIFHSSEI--GLDAF------G------YNIPNHVLMESFAE 115 (384)
Q Consensus 72 ---------~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~------g------~~i~r~~L~~~L~~ 115 (384)
++-.+-.. .+..-......+..+. -.+.+ | ..|..+.|.++|++
T Consensus 81 g~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~~v~~r~l~~AL~~ 160 (357)
T TIGR02352 81 GLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDAHVDPRELLKALVK 160 (357)
T ss_pred CCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99512740525894078711688899999987528604650779999844252422033457486523371899999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCC---CCCCCCCCCEEEEEEEEC-CCC
Q ss_conf 3664798323420565302687178983023201211123530375432000378---733222243047876411-478
Q gi|254780842|r 116 KISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMG---YGENKWSYPQKALVLNFQ-HSM 191 (384)
Q Consensus 116 ~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~~l~---~~~~~~~y~~~~l~~~~~-~~~ 191 (384)
++++.+........+..++...+.++......+.+.+|-||.|-|+.|. +.++ .+..... +| .+...+. +..
T Consensus 161 ~~~~lGv~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ad~vV~A~G~wa~--~l~~p~~~~~rpV~-G~-~l~~~~~~~~~ 236 (357)
T TIGR02352 161 ALEKLGVEIIEEVEVQEIEARGEKVTAVVTSSGDVQADQVVLAAGAWAG--ELLGPGNLPLRPVK-GQ-MLRLEVPATLV 236 (357)
T ss_pred HHHHCCCEEEECCCEEEEECCCCEEEEECCCCCCEECCEEEEECCCCHH--HHHCCCCCCCCCCC-EE-EEEEEEECCCC
T ss_conf 9985694798625335643267669885288542655747993573334--43010102556534-05-89986407665
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 86117887227875421000123201126750
Q gi|254780842|r 192 PHNGRCVEFHKSLGTITQIPLRENFSSLVWIM 223 (384)
Q Consensus 192 ~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~ 223 (384)
+..+...+.....-.+-++|-.+++.-+--+.
T Consensus 237 ~~~~~~~r~~v~~~~~YivPR~~G~l~vGAT~ 268 (357)
T TIGR02352 237 PLLNRPVRAVVYGRRVYIVPRRDGRLVVGATS 268 (357)
T ss_pred CCCCCCEEEEECCCCEEEEECCCCEEEEEEEC
T ss_conf 55774425641388345877589758998632
No 75
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=99.04 E-value=1.6e-08 Score=81.39 Aligned_cols=285 Identities=16% Similarity=0.197 Sum_probs=151.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCEE-----EECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 299997908999999999978--9859998288555578368-----887889999998899478886047123418994
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQDLRTT-----MLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~~r~~-----~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
||+|||||+||+..|+.|.+. .++|.|||..+...-.-+. -|+....+.|-.|= ..+
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSffd~Dls~~qhawla~lv----------------~~~ 64 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSFFDADLSDAQHAWLADLV----------------VYD 64 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHC----------------CCC
T ss_conf 9788727335789999875259872899984377668875301003666743577765340----------------132
Q ss_pred CCC-CCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE---CCCCCEEEEE
Q ss_conf 257-655454443450222875312011100000000123664798323420565302687178983---0232012111
Q gi|254780842|r 78 ITD-RLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTIL---LSTGQQIVGQ 153 (384)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~---~~dg~~i~ad 153 (384)
+.+ .... |-....+...--..+--..|.+.|.++..+... +.+.++.+++ .+.|.+. ..+|++|+|.
T Consensus 65 WpgGYeVR-----Fp~~rrkL~taY~S~tStrf~e~l~q~fpe~s~--~~~r~a~~~~--Ad~V~L~PsqyG~g~~i~A~ 135 (392)
T TIGR01789 65 WPGGYEVR-----FPKRRRKLKTAYLSMTSTRFREELEQKFPERSV--LLDRKAVEVD--ADAVDLEPSQYGNGRVIRAR 135 (392)
T ss_pred CCCCCEEC-----CHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEE--EECCEEEEEE--ECEEEECCCCCCCCCEEEEE
T ss_conf 88971333-----555543321022110017789999987687205--6401567766--07566265446896267640
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEE--------EEEE--CCCCCC---CCCCCCCCCCEEEE
Q ss_conf 2353037543200037873322224304787641147886117--------8872--278754---21000123201126
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYGENKWSYPQKALVLNFQHSMPHNGR--------CVEF--HKSLGT---ITQIPLRENFSSLV 220 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~~~~~~~~~~~--------a~~~--f~~~G~---~a~lP~~~~~~~iv 220 (384)
-||.|=|-+..-.=.+|+. .++--.++...||.-. .-|- +.++|. +-.||++-...-|
T Consensus 136 ~VID~Rg~~P~~~L~~GfQ--------~FlG~e~RL~~PHGl~~PiiMDATVdQ~~PhGnGGgYRFVY~LPL~~~~llI- 206 (392)
T TIGR01789 136 AVIDARGFKPSAALKVGFQ--------VFLGREVRLAEPHGLESPIIMDATVDQSDPHGNGGGYRFVYVLPLDAQELLI- 206 (392)
T ss_pred EEEECCCCCCCCCCCCCHH--------HHHCCCHHCCCCCCCCCCEEECCCHHHCCCCCCCCCEEEEEECCCCCCEEEE-
T ss_conf 2772588877721025323--------4423200015788888870425624211778798740278864798750136-
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEEEEECCCC-----CCCHHHHHCCCCEECCCCCCCCCHH
Q ss_conf 75075673245532234678877630---675467621110223202233-----4304565379421011001138445
Q gi|254780842|r 221 WIMESQEADFYYKLPVNEIARRLEQY---LYPVIGKIEVVTDVQIFQLSG-----MISHCFGKKRVVLVGEAAHALPPIC 292 (384)
Q Consensus 221 w~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~pl~~-----~~~~~~~~~rv~liGDAAH~~~P~~ 292 (384)
.++..++. ..++++.+...+.++ -++.++.+... +..+-|+-. -..++....++...|=+|--+||.+
T Consensus 207 --EDTyY~D~-~~L~~~~l~qrI~~YA~a~gW~~~t~~r~-EqGvLPv~l~GD~sa~~~~~~~PG~a~~Glragl~HP~T 282 (392)
T TIGR01789 207 --EDTYYADD-AELDEEALRQRIDDYALAKGWQLATLVRE-EQGVLPVLLAGDSSAYVDKVDIPGLAIAGLRAGLVHPTT 282 (392)
T ss_pred --EEEEECCC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HCCCCCEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf --63000588-83878988547899986428610126765-358662301587301124778897401355302447741
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHH
Q ss_conf 65321121238999999852-579907---999999998
Q gi|254780842|r 293 GQGLNLSMRDVIILLNLFQS-EHMSFR---AIGNRYHAM 327 (384)
Q Consensus 293 GqG~n~ai~Da~~L~~~l~~-~~~~~~---~~l~~Y~~~ 327 (384)
|--++.|++-|..|+..... ....++ +.++.|.++
T Consensus 283 gYslp~AV~~Ad~l~a~~aqrG~lss~~~~~~id~~ar~ 321 (392)
T TIGR01789 283 GYSLPVAVEVADALAARDAQRGALSSEDLREAIDSYARE 321 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 355789999999985201004556778999998765554
No 76
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.01 E-value=1.1e-07 Score=75.26 Aligned_cols=303 Identities=14% Similarity=0.102 Sum_probs=131.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCE--EE---ECH-H---HHH--HHHHCCCHHHHHHCC
Q ss_conf 970029999790899999999997898599982885555--7836--88---878-8---999--999889947888604
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRT--TM---LMG-E---GID--FLKEINVWDFLQDIA 67 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~--~~---l~~-~---s~~--~L~~lGl~~~l~~~~ 67 (384)
|.++||+|||||++|+++|..|++.|.+|+++|+..... ..+. .. +.. . -.. .....-+|+.+....
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 81 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEEL 81 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 97643999898699999999999769919999179887676677677775242355530334337999999999988753
Q ss_pred C------CCCCEEEEECCCCC----CC---------CCCC-CCCCHH-------CCCC-CCC-------CHHHHCCHHHH
Q ss_conf 7------12341899425765----54---------5444-345022-------2875-312-------01110000000
Q gi|254780842|r 68 E------PVSSFRLVDITDRL----IT---------APDA-IFHSSE-------IGLD-AFG-------YNIPNHVLMES 112 (384)
Q Consensus 68 ~------~~~~~~~~~~~~~~----~~---------~~~~-~~~~~~-------~~~~-~~g-------~~i~r~~L~~~ 112 (384)
. +...+......+.. .. .... .....+ .+.+ ..+ -.++-..+.+.
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (387)
T COG0665 82 GTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRA 161 (387)
T ss_pred CCCCCEEEECEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHHHHH
T ss_conf 76644566242998844674325668999999986021001188878766373337764334598488834578999999
Q ss_pred HHHHHHHCCCCCC-CCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC-CCC-CCCCCCCCCEEEEEEEECC
Q ss_conf 0123664798323-420565302687178983023201211123530375432000-378-7332222430478764114
Q gi|254780842|r 113 FAEKISQDPLIHC-FDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR-QMG-YGENKWSYPQKALVLNFQH 189 (384)
Q Consensus 113 L~~~~~~~~~~~~-~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~-~l~-~~~~~~~y~~~~l~~~~~~ 189 (384)
|.+.+.+.+...+ ....+..++.....+.+.+.+|+ +.++.||-|-|..+..-- ..+ ++..-...... ...+..
T Consensus 162 l~~~~~~~G~~~~~~~~~v~~~~~~~~~~~v~t~~g~-~~a~~vv~a~G~~~~~l~~~~~~~~~~~~p~~~~--~~~~~~ 238 (387)
T COG0665 162 LAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPVRGQ--ALTTEP 238 (387)
T ss_pred HHHHHHHCCCCEEECCCCEEEEEECCCEEEEEECCCE-EECCEEEECCCCCHHHHHHHCCCCCCCCEEEEEE--EEEECC
T ss_conf 9999997399189723524677614735899958970-9819899999964355554235234452467556--999637
Q ss_pred CCCCCEEE---EEECCCCCCCCCCCCCCCCEEEEEEECHH--HHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCEEE-E
Q ss_conf 78861178---87227875421000123201126750756--732455322--3467887763067546762111022-3
Q gi|254780842|r 190 SMPHNGRC---VEFHKSLGTITQIPLRENFSSLVWIMESQ--EADFYYKLP--VNEIARRLEQYLYPVIGKIEVVTDV-Q 261 (384)
Q Consensus 190 ~~~~~~~a---~~~f~~~G~~a~lP~~~~~~~ivw~~~~~--~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~-~ 261 (384)
........ ...........+.|..+++..+.-+.... ........+ ..++.+.+.+.+|... .......+ .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~l~-~~~~~~~w~G 317 (387)
T COG0665 239 PEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLA-DAGIEAAWAG 317 (387)
T ss_pred CCCCCCCCCCCCEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCEEEEE
T ss_conf 763311234540254058855999888985999740233677776653100159999999998582424-5565257888
Q ss_pred EECCCCCCCHHHHHCCCCEECCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20223343045653794210110011------3844565321121238999999852579
Q gi|254780842|r 262 IFQLSGMISHCFGKKRVVLVGEAAHA------LPPICGQGLNLSMRDVIILLNLFQSEHM 315 (384)
Q Consensus 262 ~~pl~~~~~~~~~~~rv~liGDAAH~------~~P~~GqG~n~ai~Da~~L~~~l~~~~~ 315 (384)
.+|.+ ..++.-+||- ++. ..=+.|.|+.++--=+..+++.+.....
T Consensus 318 ~~~~t-------~pd~~P~iG~-~~~~~~~~~a~G~~~~G~~~~p~~g~~lA~~i~g~~~ 369 (387)
T COG0665 318 LRPPT-------TPDGLPVIGR-AAPLPNLYVATGHGGHGFTLAPALGRLLADLILGGEP 369 (387)
T ss_pred ECCCC-------CCCCCCEEEE-CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 64786-------8998878864-3898989999788772066728999999999749997
No 77
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.00 E-value=1e-09 Score=90.28 Aligned_cols=36 Identities=50% Similarity=0.645 Sum_probs=34.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|++|||+||||||+|+++|+.+++.|.+|+|+|+.+
T Consensus 1 M~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 36 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 981698999977899999999996979099995899
No 78
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.99 E-value=3.7e-08 Score=78.76 Aligned_cols=56 Identities=32% Similarity=0.423 Sum_probs=42.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--------C-------CCEEEE---CHHHHHHHHHCCCHH
Q ss_conf 9999790899999999997898599982885555--------7-------836888---788999999889947
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--------D-------LRTTML---MGEGIDFLKEINVWD 61 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--------~-------~r~~~l---~~~s~~~L~~lGl~~ 61 (384)
|+|||||+|||++|..|++.|++|+|+|+++... + .+...+ .++..++++++|+..
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~~t~~~~~~~~~~d~G~~~~~~~~~~~~~l~~~lg~~~ 74 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRARSFVDGSLDQTVDNGQHVLLGAYTNLLALLRRIGAEP 74 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCEEEECCCEEEECCCHHHHHHHHHCCCCC
T ss_conf 29987868999999999878998899948998816767899788885996795798385579999999639953
No 79
>KOG2415 consensus
Probab=98.98 E-value=1.8e-08 Score=81.10 Aligned_cols=160 Identities=22% Similarity=0.269 Sum_probs=96.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHH------CCCEEEEEECCCCCCC--CCEEEECHHHHHHHHHCCCHHHH-HHCCCCCCCE
Q ss_conf 0029999790899999999997------8985999828855557--83688878899999988994788-8604712341
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAK------KGFLTALVSPRSFLQD--LRTTMLMGEGIDFLKEINVWDFL-QDIAEPVSSF 73 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~------~g~~v~iiE~~~~~~~--~r~~~l~~~s~~~L~~lGl~~~l-~~~~~~~~~~ 73 (384)
.|||+|||||||||++|+-|.| ..++|+|+||.+.... ..+-.|.|.+++-| +-=|.+. .+..+++.+-
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL--~P~wke~~apl~t~vT~d 153 (621)
T KOG2415 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEECCCHHHHH--CCCHHHCCCCCCCCCCCC
T ss_conf 405899888815678888899888760783689999612314771321305065436665--844121387445422203
Q ss_pred EEEECC-CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE--E--------
Q ss_conf 899425-76554544434502228753120111000000001236647983234205653026871789--8--------
Q gi|254780842|r 74 RLVDIT-DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVT--I-------- 142 (384)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~--v-------- 142 (384)
++.-.. ...+..+.. ..-+.+. -|+++-..|.+-|-+++.+.++..+.+..++++-.++|+.. +
T Consensus 154 ~~~fLt~~~~i~vPv~--~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415 154 KFKFLTGKGRISVPVP--SPMDNHG---NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred CEEEECCCCEEECCCC--CCCCCCC---CEEEEHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEEEECCCCCC
T ss_conf 0445436740306877--6213678---6798889999998777886171432562022236767996765760454416
Q ss_pred -------ECCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf -------302320121112353037543200037
Q gi|254780842|r 143 -------LLSTGQQIVGQFLIGSDGRNSSVRRQM 169 (384)
Q Consensus 143 -------~~~dg~~i~adlvVgADG~~S~vR~~l 169 (384)
+|+-|-.+.|+.-|-|.|.+..+.+++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred CCCCCCCCCCCCCEECCEEEEEECCCCCHHHHHH
T ss_conf 7898500000231111305897021442458999
No 80
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.6e-09 Score=84.28 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 9700299997908999999999978985-999828855557836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFL-TALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~-v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|++|||+||||||+||++|+.++|.+++ ++|+|+...- | .+.... +..
T Consensus 1 ~~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~g-------------------g---------~~~~~~---~ve 49 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-------------------G---------QLTKTT---DVE 49 (305)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC-------------------C---------CCCCCE---EEC
T ss_conf 942288998958899999999987589856999478758-------------------8---------634433---335
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76554544434502228753120111000000001236647983234205653026871789830232012111235303
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSD 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgAD 159 (384)
+.. .+.. .+.=..|.+.+.+.+...+. .+....+..++...+...+++++|+ ++++.||.|-
T Consensus 50 nyp------g~~~----------~~~g~~L~~~~~~~a~~~~~-~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAt 111 (305)
T COG0492 50 NYP------GFPG----------GILGPELMEQMKEQAEKFGV-EIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIAT 111 (305)
T ss_pred CCC------CCCC----------CCCHHHHHHHHHHHHHHCCE-EEEEEEEEEEEECCCEEEEEECCCE-EEEEEEEECC
T ss_conf 767------9867----------77508999999977763470-8888998998606860999947974-9865699961
Q ss_pred CCCCCC
Q ss_conf 754320
Q gi|254780842|r 160 GRNSSV 165 (384)
Q Consensus 160 G~~S~v 165 (384)
|+...-
T Consensus 112 G~~~~~ 117 (305)
T COG0492 112 GAGARK 117 (305)
T ss_pred CCCCCC
T ss_conf 776567
No 81
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.97 E-value=8e-09 Score=83.67 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=80.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC--------CEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 02999979089999999999789859998288555578--------3688878899999988994788860471234189
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL--------RTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~--------r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
.||+||||||+||++|..|++.|++|+|+|++..+.-. -.+.+...+.++|+++|+-- ++.
T Consensus 18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGGmlfn~ivv~~~a~~iLde~gi~y--~~~--------- 86 (229)
T pfam01946 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGMLFSAMVVRKPADEFLDEFGIRY--EDE--------- 86 (229)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCC--EEC---------
T ss_conf 688998878179999999987898599996452688862020122563376413899999749952--764---------
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE---EE----C----
Q ss_conf 942576554544434502228753120111000000001236647983234205653026871789---83----0----
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVT---IL----L---- 144 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~---v~----~---- 144 (384)
.+.. |+.+-..+...|..++-+.+...+....+.++...++.+. +. .
T Consensus 87 ---~~g~-------------------~v~ds~~~~s~L~s~a~~aGakifn~~~VEDli~r~~rV~GvViNWt~V~~~g~ 144 (229)
T pfam01946 87 ---GDYV-------------------VVADAAEFTSTLASKALQPGVKIFNATSVEDLIIRDNRVAGVVTNWTLVEMAGL 144 (229)
T ss_pred ---CCCE-------------------EEECHHHHHHHHHHHHHCCCCEEEECCEEEEEEEECCCEEEEEEEEEHHHHCCC
T ss_conf ---7966-------------------994499999999999767898998244888899967927999984114444367
Q ss_pred -CCCCEEEEEEEEEECCCCCCCCC
Q ss_conf -23201211123530375432000
Q gi|254780842|r 145 -STGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 145 -~dg~~i~adlvVgADG~~S~vR~ 167 (384)
-|.-.+++++||.|.|-...+-+
T Consensus 145 hvDP~~i~ak~VvDaTGHda~v~~ 168 (229)
T pfam01946 145 HMDPLTIRAKAVVDATGHDAPFGA 168 (229)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 558421100179866889748988
No 82
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.95 E-value=8.1e-09 Score=83.64 Aligned_cols=37 Identities=38% Similarity=0.599 Sum_probs=35.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
||+|||+||||||+|+++|+.+++.|.+|+++|+...
T Consensus 1 M~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~ 37 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9978989999788999999999978992999975899
No 83
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.95 E-value=3.4e-07 Score=71.73 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=47.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCCC-------------CC--CEE-EECHHHHHHHHHCC
Q ss_conf 9700299997908999999999978------98599982885555-------------78--368-88788999999889
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKK------GFLTALVSPRSFLQ-------------DL--RTT-MLMGEGIDFLKEIN 58 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~------g~~v~iiE~~~~~~-------------~~--r~~-~l~~~s~~~L~~lG 58 (384)
||+ |+||||||+||++|..|+|. +++|+|+|+.+... +. ++. .-.|..++++++||
T Consensus 1 Mk~--vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T~~~~g~~~E~GP~s~~~~~~~~~~L~~eLG 78 (466)
T PRK12416 1 MKT--VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLN 78 (466)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 975--999899789999999998725555899867999779988677989973999975598600348878999999869
Q ss_pred CHHHHHH
Q ss_conf 9478886
Q gi|254780842|r 59 VWDFLQD 65 (384)
Q Consensus 59 l~~~l~~ 65 (384)
+.+.+-.
T Consensus 79 L~d~li~ 85 (466)
T PRK12416 79 LEEEMVY 85 (466)
T ss_pred CCCCCCC
T ss_conf 9311446
No 84
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.95 E-value=6.7e-08 Score=76.90 Aligned_cols=159 Identities=9% Similarity=0.054 Sum_probs=82.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCC--CCCCEEE-ECH--HHH-HHHHHCCC-------------HH
Q ss_conf 00299997908999999999978--9859998288555--5783688-878--899-99998899-------------47
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFL--QDLRTTM-LMG--EGI-DFLKEINV-------------WD 61 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~--~~~r~~~-l~~--~s~-~~L~~lGl-------------~~ 61 (384)
+.||+|||||++||++|+.|++. |.+|+|+|+...- ...|... +.. ... .+.+.+|. .+
T Consensus 24 ~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGRNgG~~~~~~~~~~~l~~~~G~~~a~~l~~~~~~a~~ 103 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQAVL 103 (460)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 55199999439999999999974899988999489615655665445156777644789987589999999999999999
Q ss_pred HH----HHCCCCCC-----CEEEEECCCCCC-----------CC-CC-CCCCCH----HCCCCC-C-C------CHHHHC
Q ss_conf 88----86047123-----418994257655-----------45-44-434502----228753-1-2------011100
Q gi|254780842|r 62 FL----QDIAEPVS-----SFRLVDITDRLI-----------TA-PD-AIFHSS----EIGLDA-F-G------YNIPNH 107 (384)
Q Consensus 62 ~l----~~~~~~~~-----~~~~~~~~~~~~-----------~~-~~-~~~~~~----~~~~~~-~-g------~~i~r~ 107 (384)
.+ ...+..+. .+.......... .. .. ...+.. ..+.+. + | ..+.-.
T Consensus 104 ~v~~~i~~~gIdcd~~~~G~l~~A~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~gs~~~~~g~~~~~~~~~~P~ 183 (460)
T TIGR03329 104 EIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQPG 183 (460)
T ss_pred HHHHHHHHHCCCCCEEECCEEEEEECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHCCCHHCCEEEECCCCEECHH
T ss_conf 99998887298855220788999729999999999999999759940056479899988696100124970686257699
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC
Q ss_conf 00000012366479832342056530268717898302320121112353037543
Q gi|254780842|r 108 VLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNS 163 (384)
Q Consensus 108 ~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S 163 (384)
.|...|.+.+.+.++..+.++.|++++. .+...|+++.|+ |+|+-||-|-+..+
T Consensus 184 kl~~gLa~~a~~~Gv~i~e~t~V~~i~~-g~~~~v~T~~G~-I~A~~VV~ATnay~ 237 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQ-VTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHCCCEEECCEEEEEEEC-CCCEEEEECCCE-EEEEEEEEEECCCC
T ss_conf 9999999998734880774605799855-995499927978-99706999715553
No 85
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=2.7e-08 Score=79.77 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=35.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++|||+||||||+|+++|+.+++.|.+|+|+|+.+.
T Consensus 1 M~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~ 37 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKA 37 (438)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9955879999788999999999978894999946998
No 86
>PRK07233 hypothetical protein; Provisional
Probab=98.92 E-value=7.4e-09 Score=83.91 Aligned_cols=163 Identities=19% Similarity=0.174 Sum_probs=92.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--------C-----CEEEE---CHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 99997908999999999978985999828855557--------8-----36888---78899999988994788860471
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD--------L-----RTTML---MGEGIDFLKEINVWDFLQDIAEP 69 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~--------~-----r~~~l---~~~s~~~L~~lGl~~~l~~~~~~ 69 (384)
|+|||||++||++|..|++.|++|+|+|+++...- . +...+ .+...++++++|+.+.+......
T Consensus 2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~~t~~~~G~~~d~g~h~~~~~~~~~~~l~~elgl~~~~~~~~~~ 81 (430)
T PRK07233 2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLAASFEFGGLSIERFYHHIFKSDEALLDLLEELGLEDKLRWLETK 81 (430)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCEEEECCEEEECCCCHHHHHHHHHHCCCCCEEECCCC
T ss_conf 89999778999999999839998899958998959977998599699666137068847999999980996430324787
Q ss_pred C---CCEEEEECCC--------------CC----------CCCCCCCCC-------------------------------
Q ss_conf 2---3418994257--------------65----------545444345-------------------------------
Q gi|254780842|r 70 V---SSFRLVDITD--------------RL----------ITAPDAIFH------------------------------- 91 (384)
Q Consensus 70 ~---~~~~~~~~~~--------------~~----------~~~~~~~~~------------------------------- 91 (384)
. ..-+.....+ +. .......++
T Consensus 82 ~~~~~~g~~~~~~~p~~~l~~p~l~~~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~g~~~~~~~~~pl~~~~~~~ 161 (430)
T PRK07233 82 MGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLAFLSRRIKDWRALDKISAEEWLRRWIGKGVYEVLWEPLLESKFGE 161 (430)
T ss_pred CEEEECCEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 56998996764588688845899998999997888875024456022311689999998538999999999998636168
Q ss_pred -CHHCCC------------------CCCCCHH-HHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEE
Q ss_conf -022287------------------5312011-10000000012366479832342056530268717898302320121
Q gi|254780842|r 92 -SSEIGL------------------DAFGYNI-PNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIV 151 (384)
Q Consensus 92 -~~~~~~------------------~~~g~~i-~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~ 151 (384)
..+.+. +.++|.- --..|.+.|.+.+.+.+.....++.|++|..+++++++...+|++++
T Consensus 162 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~~~g~~~~ 241 (430)
T PRK07233 162 YADEVSAAWLWSRIKRRGDRKGLFGEKLGYLEGGFGTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVETDGEEEA 241 (430)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEEECCCEEE
T ss_conf 83453399999999987301334565111106989999999999999759999979978899995998999997994999
Q ss_pred EEEEEEECCCCCCCCCCC
Q ss_conf 112353037543200037
Q gi|254780842|r 152 GQFLIGSDGRNSSVRRQM 169 (384)
Q Consensus 152 adlvVgADG~~S~vR~~l 169 (384)
||.||.|--.+ .+++.+
T Consensus 242 ad~VI~a~p~~-~~~~ll 258 (430)
T PRK07233 242 FDAVISTIPPP-LLARLA 258 (430)
T ss_pred CCEEEECCCHH-HHHHHC
T ss_conf 39999899989-999756
No 87
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=98.91 E-value=1.4e-08 Score=82.00 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=95.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 02999979089999999999789859998288555578368887889999998899478886047123418994257655
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLI 83 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 83 (384)
|||+||||||||+|+|+.-+|.+++.++||+..+-- .++.|. .-+.++
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~--aGGql~-----------~T~~vE------------------- 48 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGI--AGGQLT-----------TTTEVE------------------- 48 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCC--CCCCCC-----------CCCEEE-------------------
T ss_conf 928998478678889999887467278983577774--555333-----------220651-------------------
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-----EEEEECCCCCEEEEEEEEEE
Q ss_conf 4544434502228753120111000000001236647983234205653026871-----78983023201211123530
Q gi|254780842|r 84 TAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE-----EVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-----~v~v~~~dg~~i~adlvVgA 158 (384)
++|-+.-.|.=..|.+.+.+++.+-+....++..|..++..++ .-.+.++ ++++||=||-|
T Consensus 49 ------------NYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiA 114 (321)
T TIGR01292 49 ------------NYPGFPEGISGPELMEKMKEQAKKFGAEIIYGEEVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIA 114 (321)
T ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEE
T ss_conf ------------3686888766288999999999870673662670568633788436610389717--56886589991
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCEEEEEEEECCCC
Q ss_conf 37543200037873-3222243047876411478
Q gi|254780842|r 159 DGRNSSVRRQMGYG-ENKWSYPQKALVLNFQHSM 191 (384)
Q Consensus 159 DG~~S~vR~~l~~~-~~~~~y~~~~l~~~~~~~~ 191 (384)
-|+.. |+++++ -+. .|.+..+...--++-
T Consensus 115 tGa~~---r~lg~~kGE~-ef~GrGVSyCA~CDG 144 (321)
T TIGR01292 115 TGAEA---RKLGIPKGED-EFLGRGVSYCATCDG 144 (321)
T ss_pred CCCHH---HHCCCCCCHH-HHCCCCEEEEEHHCC
T ss_conf 38715---4237886645-532686667223105
No 88
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.7e-08 Score=79.86 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC---C-----EEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 02999979089999999999789859998288555578---3-----688878899999988994788860471234189
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL---R-----TTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~---r-----~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
-||+||||||+||++|..|++.|++|+|+|++-.+.-. + .+.+...+.++|+++|+-- + +..
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~y--e----~~e---- 100 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRY--E----EEE---- 100 (262)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC--E----ECC----
T ss_conf 267998768505789999986796499997301468763344333560444253899999819852--4----457----
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-EE---EEEC-------
Q ss_conf 942576554544434502228753120111000000001236647983234205653026871-78---9830-------
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE-EV---TILL------- 144 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~v---~v~~------- 144 (384)
+.. |+..-..+...|..++-+.+...+....+.++...++ +| .+..
T Consensus 101 ----~g~-------------------~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~ 157 (262)
T COG1635 101 ----DGY-------------------YVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG 157 (262)
T ss_pred ----CCE-------------------EEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCEEEEEEECCHHHHCC
T ss_conf ----966-------------------983279999999999873081024232477899816994689998251222056
Q ss_pred --CCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf --232012111235303754320003
Q gi|254780842|r 145 --STGQQIVGQFLIGSDGRNSSVRRQ 168 (384)
Q Consensus 145 --~dg~~i~adlvVgADG~~S~vR~~ 168 (384)
-|--++++++||.|.|-.-.+-+.
T Consensus 158 lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 158 LHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred CCCCCCEEEEEEEEECCCCCHHHHHH
T ss_conf 54275112478999678884289999
No 89
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.86 E-value=2.4e-08 Score=80.22 Aligned_cols=37 Identities=43% Similarity=0.637 Sum_probs=33.7
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 97-00299997908999999999978985999828855
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|. +|||+||||||+|+++|+.+++.|.+|+|+|+...
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~ 38 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKN 38 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99618899999888999999999978991999972577
No 90
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.86 E-value=2.1e-08 Score=80.53 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=77.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CE-----EEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 02999979089999999999789859998288555578---36-----88878899999988994788860471234189
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL---RT-----TMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~---r~-----~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
.||+||||||+||++|..|++.|++|+|+|++-.+.-. ++ +.+..++.++|+++|+. +...
T Consensus 26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGGmlf~~iVv~~~a~~iLde~gi~---------y~~~-- 94 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGGMLFNKIVVQEEADEILDEFGIR---------YKEV-- 94 (257)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCHHHHCCHHHHHHHHCCCC---------CEEC--
T ss_conf 68899888827999999998689659999713468886313000133454005379999984997---------3335--
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCC-EEEEEECCC-CEEE---EEEC------
Q ss_conf 9425765545444345022287531201110000000012366479832342-056530268-7178---9830------
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFD-ALANEIQIG-EEEV---TILL------ 144 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~-~~v~~i~~~-~~~v---~v~~------ 144 (384)
.+. -|+++-..+...|..++.+.+ ..+++ ..+.++... ++.+ .+..
T Consensus 95 ---~~g-------------------~~v~d~~~~~s~L~~~a~~aG-akifn~~~VEDli~r~~~rV~GvV~NWt~V~~~ 151 (257)
T PRK04176 95 ---EDG-------------------LYVADSVEAAAKLAAGAIDAG-AKIFNGVSVEDVIIREDGRVAGVVINWTPVEMA 151 (257)
T ss_pred ---CCC-------------------EEEECHHHHHHHHHHHHHHCC-CEEEECCEEEEEEEECCCCEEEEEECCHHHHHH
T ss_conf ---896-------------------399508999999999997479-889823044215661288178999625775640
Q ss_pred ---CCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf ---2320121112353037543200037
Q gi|254780842|r 145 ---STGQQIVGQFLIGSDGRNSSVRRQM 169 (384)
Q Consensus 145 ---~dg~~i~adlvVgADG~~S~vR~~l 169 (384)
-|--++++++||.|.|=...+-+.+
T Consensus 152 glhvDP~~i~ak~VvdaTGHda~v~~~~ 179 (257)
T PRK04176 152 GLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCCCCCEECCCEEEECCCCCHHHHHHH
T ss_conf 3555852011368998889860899999
No 91
>PRK06116 glutathione reductase; Validated
Probab=98.85 E-value=9.2e-08 Score=75.91 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=33.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 70029999790899999999997898599982885
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
++|||+||||||+|+++|+.+++.|.+|+|+|+..
T Consensus 3 ~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKE 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 74888999988899999999996879699993799
No 92
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.85 E-value=4e-08 Score=78.56 Aligned_cols=133 Identities=20% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 9700299997908999999999978985-999828855557836888788999999889947888604712341899425
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFL-TALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~-v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
|.++||+|||||++|+++|..|.+.|++ ++|+||+..... .|..- ...+++. +..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg------------------~W~~~-----ry~~l~~-~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG------------------TWRYN-----RYPGLRL-DSP 61 (443)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC------------------CCCCC-----CCCEEEE-CCC
T ss_conf 67554899898788999999999759986799970576678------------------65556-----6871676-797
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCC----CCCEEEEEECCCCEEEEEECCCCCE--EEEE
Q ss_conf 765545444345022287531201110000000012366479832----3420565302687178983023201--2111
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIH----CFDALANEIQIGEEEVTILLSTGQQ--IVGQ 153 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~----~~~~~v~~i~~~~~~v~v~~~dg~~--i~ad 153 (384)
.....-+...|. .....+. ...+..-+.+.+.+..... ....++....++.+.++|++++|.+ +++|
T Consensus 62 ~~~~~~~~~p~~-~~~~~~~------~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~ 134 (443)
T COG2072 62 KWLLGFPFLPFR-WDEAFAP------FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTAD 134 (443)
T ss_pred CCCCCCCCCCCC-CCCCCCC------CCCHHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEECC
T ss_conf 401158888877-6556777------643899999999983560450214525688630588706999648875225126
Q ss_pred EEEEECCCCCC
Q ss_conf 23530375432
Q gi|254780842|r 154 FLIGSDGRNSS 164 (384)
Q Consensus 154 lvVgADG~~S~ 164 (384)
.||.|.|..|.
T Consensus 135 ~vV~ATG~~~~ 145 (443)
T COG2072 135 FVVVATGHLSE 145 (443)
T ss_pred EEEECCCCCCC
T ss_conf 79983057898
No 93
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.83 E-value=4.7e-08 Score=78.06 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=67.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
||+||||||||+++|..|++.|++|+|+|+.... . +.+. + +...... .
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~----~--~~~~--------~-----------i~~~~~~---~---- 48 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGT----C--YNRG--------C-----------IPKKLLL---E---- 48 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC----E--EEEC--------C-----------CCCCCCC---C----
T ss_conf 9999997699999999998499979999379993----5--7557--------7-----------4771164---5----
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
. .....+.....+...+.....+.+..+..++..... +++++|+++++|.||-|-|.++.
T Consensus 49 ---------~---------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~ 108 (277)
T pfam07992 49 ---------A---------AEVGKLDLRPLEQYKDEGIEVLLGTGVTAIDKAGKK--VTLDDGKELTYDKLVIATGARPR 108 (277)
T ss_pred ---------C---------CCHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCE--EEECCCCEEECCEEEECCCCCCC
T ss_conf ---------4---------331456189999998759799968779999789998--99878939985999998799862
No 94
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=3.8e-08 Score=78.72 Aligned_cols=36 Identities=47% Similarity=0.648 Sum_probs=34.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||+|||+||||||+|+++|+.+++.|.+|+|+|++.
T Consensus 1 M~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~ 36 (466)
T PRK06115 1 MKSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 984698999978899999999997899399996799
No 95
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=98.82 E-value=7.5e-08 Score=76.56 Aligned_cols=135 Identities=16% Similarity=0.249 Sum_probs=80.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHH---H-CCCCCCCEEEEECCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888---6-0471234189942576
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQ---D-IAEPVSSFRLVDITDR 81 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~---~-~~~~~~~~~~~~~~~~ 81 (384)
|+|||||++||++|..|...|++++++|+++... |+|..-. + .+.-..... .+....
T Consensus 4 VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iG------------------G~W~~~~~~~~~~~~~y~sl~-~Ntsk~ 64 (532)
T pfam00743 4 VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIG------------------GLWRFTEHVEEGRASIYKSVV-TNSSKE 64 (532)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC------------------CCCCCCCCCCCCCCCCCCCEE-EECCCH
T ss_conf 9998972999999999987799829997799973------------------506688887888676489706-858900
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCC--CCCCEEEEEECCCCE-----EEEEEC-CCCCE--EE
Q ss_conf 554544434502228753120111000000001236647983--234205653026871-----789830-23201--21
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLI--HCFDALANEIQIGEE-----EVTILL-STGQQ--IV 151 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~-----~v~v~~-~dg~~--i~ 151 (384)
...-++..+. + ..+.+ .++..+.+-|.+.+++.+.. ..++++|.+++..+| .+.|++ .+|++ -.
T Consensus 65 ~~~fSDfP~P--~-~~p~f---~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~ 138 (532)
T pfam00743 65 MSCFSDFPFP--E-DYPNF---MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAV 138 (532)
T ss_pred HHCCCCCCCC--C-CCCCC---CCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 5138999899--8-78899---8989999999999998099673765778999997667666861899998589088999
Q ss_pred EEEEEEECCCCCCC
Q ss_conf 11235303754320
Q gi|254780842|r 152 GQFLIGSDGRNSSV 165 (384)
Q Consensus 152 adlvVgADG~~S~v 165 (384)
.|.||.|.|.++.=
T Consensus 139 fD~ViVctG~~~~P 152 (532)
T pfam00743 139 FDAVMVCTGHHTNP 152 (532)
T ss_pred EEEEEEECCCCCCC
T ss_conf 77999946677868
No 96
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.81 E-value=2.6e-08 Score=79.93 Aligned_cols=145 Identities=16% Similarity=0.240 Sum_probs=90.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-CCC----CCEEEECHH-HHHHHHHCCCHHHHHHCCCCCCCE-
Q ss_conf 9700299997908999999999978985999828855-557----836888788-999999889947888604712341-
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-LQD----LRTTMLMGE-GIDFLKEINVWDFLQDIAEPVSSF- 73 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-~~~----~r~~~l~~~-s~~~L~~lGl~~~l~~~~~~~~~~- 73 (384)
|++|||+|||||-||+-+|.+.+|.|.+++++-.+.. ... +.-+.+... -++-.+.|| .+.........+
T Consensus 4 ~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLg---G~mg~~aD~~~Iq 80 (621)
T PRK05192 4 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALG---GEMGKAADKTGIQ 80 (621)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCC---CHHHHHHHHHHHH
T ss_conf 8879889989757999999999967996799965813115860452036721657666877536---8999999887616
Q ss_pred -EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE-EECCCCCEEE
Q ss_conf -89942576554544434502228753120111000000001236647983234205653026871789-8302320121
Q gi|254780842|r 74 -RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVT-ILLSTGQQIV 151 (384)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~-v~~~dg~~i~ 151 (384)
++........ .......+.|....+.+.+.+.+.+++.+....|+++...++.+. |.+.+|..+.
T Consensus 81 ~r~LN~sKGpA-------------v~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~ 147 (621)
T PRK05192 81 FRMLNTSKGPA-------------VRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFR 147 (621)
T ss_pred HHHHCCCCCCC-------------CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEE
T ss_conf 87615888830-------------06739888599999999999964999789981457999879999999966870998
Q ss_pred EEEEEEECCC
Q ss_conf 1123530375
Q gi|254780842|r 152 GQFLIGSDGR 161 (384)
Q Consensus 152 adlvVgADG~ 161 (384)
|+-||-+.|-
T Consensus 148 a~~vvlttGT 157 (621)
T PRK05192 148 AKAVVLTTGT 157 (621)
T ss_pred EEEEEEECCC
T ss_conf 5269983156
No 97
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.79 E-value=7.3e-08 Score=76.63 Aligned_cols=172 Identities=20% Similarity=0.256 Sum_probs=93.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHHHHHCCC---HHHHHH------CC--
Q ss_conf 970029999790899999999997898599982885555--78368887889999998899---478886------04--
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDFLKEINV---WDFLQD------IA-- 67 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~L~~lGl---~~~l~~------~~-- 67 (384)
|.+|||+|||||++|+-.|.-++.+|++|+++|+.++.. ..|..-|-..+.++|++..+ .+.+.. .+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 35777899898654699999998679849999547656766676345755416665306547999999999999975866
Q ss_pred --CCCCCEEEEEC--C----------------CCCCCCC-CCCCCCHH--CCCCCC-------C-----CHHHHCCHHHH
Q ss_conf --71234189942--5----------------7655454-44345022--287531-------2-----01110000000
Q gi|254780842|r 68 --EPVSSFRLVDI--T----------------DRLITAP-DAIFHSSE--IGLDAF-------G-----YNIPNHVLMES 112 (384)
Q Consensus 68 --~~~~~~~~~~~--~----------------~~~~~~~-~~~~~~~~--~~~~~~-------g-----~~i~r~~L~~~ 112 (384)
.|...+--... . +.....+ ....+..+ ...+.+ + +.+.-.-|.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCHHCCCCEEEECCCEECHHHHHHH
T ss_conf 11368675863688652247886899998762512358743311655520028654620045419970635246889999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCC---CC--EEEEEEEEEECCCCCC-CCCCCCCC
Q ss_conf 0123664798323420565302687178983023---20--1211123530375432-00037873
Q gi|254780842|r 113 FAEKISQDPLIHCFDALANEIQIGEEEVTILLST---GQ--QIVGQFLIGSDGRNSS-VRRQMGYG 172 (384)
Q Consensus 113 L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~d---g~--~i~adlvVgADG~~S~-vR~~l~~~ 172 (384)
....+.+++...+.-.+|+.+..+++-+-|...| |+ +++++.||-|-|..+. +++..+.+
T Consensus 170 ~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 170 NARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred HHHHHHHCCCHHHHCCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEECCCCCHHHHHHHHCCC
T ss_conf 999999653012304615345540877899997157882799883779989870189998762346
No 98
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.78 E-value=5.5e-08 Score=77.55 Aligned_cols=36 Identities=50% Similarity=0.840 Sum_probs=34.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|++|||+||||||+|+++|+.+++.|.+|+|+|+..
T Consensus 2 ~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~ 37 (467)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKY 37 (467)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 856878999978899999999997899099994899
No 99
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.78 E-value=2.5e-07 Score=72.68 Aligned_cols=259 Identities=14% Similarity=0.111 Sum_probs=118.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------------CCCEEEECHHHHHHHHHCCCHHHHHHCCCC-C
Q ss_conf 29999790899999999997898599982885555-------------783688878899999988994788860471-2
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------------DLRTTMLMGEGIDFLKEINVWDFLQDIAEP-V 70 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------------~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~-~ 70 (384)
+|+|||+||+|+++|..|+..|.+|+|+||..-.. |.++-.+.|..-.+++-. +...+.+.. +
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGLVDV 79 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHEECCCCCCCCCCCEEECCCCHHHHHHH---HHHHHCCCEEE
T ss_conf 479975636889999999866957999973887553110000578653455504157865799999---99986785430
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC-E
Q ss_conf 341899425765545444345022287531201110000000012366479832342056530268717898302320-1
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQ-Q 149 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~-~ 149 (384)
..-.++...+.. ..+... + .++.| .-..+.|-+.|...+ ...++++|+++...++.++++.++|. .
T Consensus 80 W~~~~~~~~~~~-~~~~~d----~--~pyvg-~pgmsalak~LAtdL-----~V~~~~rVt~v~~~~~~W~l~~~~g~~~ 146 (331)
T COG3380 80 WTPAVWTFTGDG-SPPRGD----E--DPYVG-EPGMSALAKFLATDL-----TVVLETRVTEVARTDNDWTLHTDDGTRH 146 (331)
T ss_pred CCCCCCCCCCCC-CCCCCC----C--CCCCC-CCCHHHHHHHHHCCC-----HHHHHHHHHHHEECCCEEEEEECCCCCC
T ss_conf 351110113688-899888----7--76236-743679999872450-----4344223143123387168984688764
Q ss_pred EEEEEEEEEC--------------CCCCCCCCCCCCCCCCCCCCEE-EEEEEEC--CCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 2111235303--------------7543200037873322224304-7876411--478861178872278754210001
Q gi|254780842|r 150 IVGQFLIGSD--------------GRNSSVRRQMGYGENKWSYPQK-ALVLNFQ--HSMPHNGRCVEFHKSLGTITQIPL 212 (384)
Q Consensus 150 i~adlvVgAD--------------G~~S~vR~~l~~~~~~~~y~~~-~l~~~~~--~~~~~~~~a~~~f~~~G~~a~lP~ 212 (384)
..+|.||.|= +..-.+|..+ ....|.-. +++..+. .+.|-++ .|..+-+++.+-+
T Consensus 147 ~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~----a~V~y~Pc~s~~lg~~q~l~~P~~G----~~vdg~~laWla~ 218 (331)
T COG3380 147 TQFDDVVLAIPAPQTATLLTTDADDLPAALRAAL----ADVVYAPCWSAVLGYPQPLDRPWPG----NFVDGHPLAWLAR 218 (331)
T ss_pred CCCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHH----CCCEEHHHHHHHHCCCCCCCCCCCC----CCCCCCEEEEEEC
T ss_conf 5534389936887531221755454369999763----2514205899984688667888898----6217870022000
Q ss_pred C---CCC----EEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCEEEEEECC----CCCC---CHHHHH
Q ss_conf 2---320----112675075673245532234678877630675467621---1102232022----3343---045653
Q gi|254780842|r 213 R---ENF----SSLVWIMESQEADFYYKLPVNEIARRLEQYLYPVIGKIE---VVTDVQIFQL----SGMI---SHCFGK 275 (384)
Q Consensus 213 ~---~~~----~~ivw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~pl----~~~~---~~~~~~ 275 (384)
. .++ ..+|.-..++-.......++++....+...+.+..+.-. ..+..+.|+. .... ...=..
T Consensus 219 d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~~~~L~ad~~ 298 (331)
T COG3380 219 DASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRYAIPNDAVAGPPLDADRE 298 (331)
T ss_pred CCCCCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34678878768659997082677976269878899999875200447778860577750431036530104775115778
Q ss_pred CCCCEECCCCCC
Q ss_conf 794210110011
Q gi|254780842|r 276 KRVVLVGEAAHA 287 (384)
Q Consensus 276 ~rv~liGDAAH~ 287 (384)
.++...||.+|.
T Consensus 299 ~~l~~cGDwc~G 310 (331)
T COG3380 299 LPLYACGDWCAG 310 (331)
T ss_pred CCEEEECCCCCC
T ss_conf 762664033457
No 100
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.77 E-value=4.3e-08 Score=78.35 Aligned_cols=156 Identities=19% Similarity=0.265 Sum_probs=79.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCE-EEEC-----HH-HH-HHHHHCCCHHHHHHCC-CCCC-
Q ss_conf 0299997908999999999978985999828855557--836-8887-----88-99-9999889947888604-7123-
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD--LRT-TMLM-----GE-GI-DFLKEINVWDFLQDIA-EPVS- 71 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~--~r~-~~l~-----~~-s~-~~L~~lGl~~~l~~~~-~~~~- 71 (384)
|||+|||||++|+++|..|+++|.+|+|+|+...... .|. ..+. +. .. ..+...-+|.++.... .++.
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~gaS~~n~G~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~ 80 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE 80 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 92999993299999999999789949999899999774576420460157684899999999999999988734989794
Q ss_pred --CEEEEECCCCCC-----------CCCCCC-CCCHHC-------CCCC-C-------CCHHHHCCHHHHHHHH-HHHCC
Q ss_conf --418994257655-----------454443-450222-------8753-1-------2011100000000123-66479
Q gi|254780842|r 72 --SFRLVDITDRLI-----------TAPDAI-FHSSEI-------GLDA-F-------GYNIPNHVLMESFAEK-ISQDP 121 (384)
Q Consensus 72 --~~~~~~~~~~~~-----------~~~~~~-~~~~~~-------~~~~-~-------g~~i~r~~L~~~L~~~-~~~~~ 121 (384)
.+......+... ...... .+..+. ..+. . ...+.-..+...|.+. +++.+
T Consensus 81 ~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~e~l~~~e~~~~~P~l~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~a~~~G 160 (365)
T TIGR03364 81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG 160 (365)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEEECCCCCEECHHHHHHHHHHHHHHHCC
T ss_conf 27899987989999999999999976996499779999986686667753699994998789999999999999998579
Q ss_pred CCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 8323420565302687178983023201211123530375432
Q gi|254780842|r 122 LIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 122 ~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
...+.+..|..++. .+|+++.| +++|+-||.|-|..|.
T Consensus 161 v~~~~~t~V~~i~~----~~V~T~~G-~i~a~~VVvaaG~~~~ 198 (365)
T TIGR03364 161 VEFHWNTAVTSVET----GTVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred CEEEEEEEEEEEEE----EEEEECCC-EEEEEEEEECCCCHHH
T ss_conf 28993128996201----48997892-8997669996684055
No 101
>KOG2820 consensus
Probab=98.77 E-value=3.5e-07 Score=71.67 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=94.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-E---ECHHH-------HHHHHHCCCHHHHHHC-CCC
Q ss_conf 7002999979089999999999789859998288555578368-8---87889-------9999988994788860-471
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTT-M---LMGEG-------IDFLKEINVWDFLQDI-AEP 69 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~-~---l~~~s-------~~~L~~lGl~~~l~~~-~~~ 69 (384)
+.+||+|||||+-||++|..|+++|.+++++|+.+.+...+.. . |...+ -..++.+..|-.+... +..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHCEE
T ss_conf 65169998664000088999986577079873367776567656744021202336899999999999987484643336
Q ss_pred C--CCEEEEECCCCC---------------------------CCCC-CCCCCCHHCCCC--CCCCHHHHCCHHHHHHHHH
Q ss_conf 2--341899425765---------------------------5454-443450222875--3120111000000001236
Q gi|254780842|r 70 V--SSFRLVDITDRL---------------------------ITAP-DAIFHSSEIGLD--AFGYNIPNHVLMESFAEKI 117 (384)
Q Consensus 70 ~--~~~~~~~~~~~~---------------------------~~~~-~~~~~~~~~~~~--~~g~~i~r~~L~~~L~~~~ 117 (384)
. .....+. +... ..-+ ...++....+.- .-|+ +.-..-.++|.+.+
T Consensus 86 ~~~~t~~~~~-~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGv-i~a~kslk~~~~~~ 163 (399)
T KOG2820 86 LHCGTGLLIS-GDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGV-INAAKSLKALQDKA 163 (399)
T ss_pred ECCCCEEEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCE-EEHHHHHHHHHHHH
T ss_conf 4156203650-767877789999987650035553027989975877765786412203455657-41889999999999
Q ss_pred HHCCCCCCCCEEEEEEC---CCCEEEEEECCCCCEEEEEEEEEECCC--CCCCCCCCCCCC
Q ss_conf 64798323420565302---687178983023201211123530375--432000378733
Q gi|254780842|r 118 SQDPLIHCFDALANEIQ---IGEEEVTILLSTGQQIVGQFLIGSDGR--NSSVRRQMGYGE 173 (384)
Q Consensus 118 ~~~~~~~~~~~~v~~i~---~~~~~v~v~~~dg~~i~adlvVgADG~--~S~vR~~l~~~~ 173 (384)
++.+.+.+.+.++..++ +.++.+.|.+.+|..+.|+=+|.+-|+ ++.++.-+++.+
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~ 224 (399)
T KOG2820 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGF 224 (399)
T ss_pred HHCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECHHHHHHCCCCCCCCC
T ss_conf 8708599627504567504677852589966687433124899830878865574224588
No 102
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.77 E-value=5.1e-08 Score=77.78 Aligned_cols=37 Identities=43% Similarity=0.653 Sum_probs=33.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
+++|||+||||||+|+++|+.+++.|.+|+|+|+...
T Consensus 2 ~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~ 38 (464)
T PRK05976 2 AKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKL 38 (464)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9718899999788999999999978992999978997
No 103
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1.1e-07 Score=75.38 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++|||+|||+|+|||++|+.+++.|.+|+|+||...
T Consensus 5 ~~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~ 41 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7567989999549999999999874993899978898
No 104
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.74 E-value=6.3e-08 Score=77.11 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=87.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHH-----------HHHCCCHHHHHHC-CC
Q ss_conf 0029999790899999999997898599982885555--78368887889999-----------9988994788860-47
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDF-----------LKEINVWDFLQDI-AE 68 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~-----------L~~lGl~~~l~~~-~~ 68 (384)
+|||+|||||++|+..|.-|+++|++|+|+||.++.. ..+...|-..+.++ +++-.++..+.++ ..
T Consensus 5 e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~Aphlv~ 84 (545)
T PRK11101 5 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVE 84 (545)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 17689999868999999999867993999989976162001201271225231233709999999989999985916403
Q ss_pred CCCCEEEEECCCCCCC-----------C-CCCCCCCHH-------CCCCCC-C-----CHHHHCCHHHHHHHHHHHCCCC
Q ss_conf 1234189942576554-----------5-444345022-------287531-2-----0111000000001236647983
Q gi|254780842|r 69 PVSSFRLVDITDRLIT-----------A-PDAIFHSSE-------IGLDAF-G-----YNIPNHVLMESFAEKISQDPLI 123 (384)
Q Consensus 69 ~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~-------~~~~~~-g-----~~i~r~~L~~~L~~~~~~~~~~ 123 (384)
|...+.+.-..+.... . +....+..+ .+.+.. + ..+.-..|.-.+...+.+++..
T Consensus 85 ~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~eP~l~~~l~ga~~~~Dg~vdp~rL~ia~a~~A~~~GA~ 164 (545)
T PRK11101 85 PTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAR 164 (545)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCHHCEEEEEECCEEECHHHHHHHHHHHHHHCCCC
T ss_conf 06863897150226789999999997699847768999997586888302079995522787389999999999974820
Q ss_pred CCCCEEEEEECCCCEEEE-EEC---CCCC--EEEEEEEEEECCCCCC-CCCCCCCCC
Q ss_conf 234205653026871789-830---2320--1211123530375432-000378733
Q gi|254780842|r 124 HCFDALANEIQIGEEEVT-ILL---STGQ--QIVGQFLIGSDGRNSS-VRRQMGYGE 173 (384)
Q Consensus 124 ~~~~~~v~~i~~~~~~v~-v~~---~dg~--~i~adlvVgADG~~S~-vR~~l~~~~ 173 (384)
....++|+++..+++.+. +.. .+|+ +++|++||-|-|.++- +++..+.+.
T Consensus 165 i~~~t~V~~i~~~~g~v~gv~~~d~~tg~~~~i~ak~VINAAG~wad~I~~ma~~~~ 221 (545)
T PRK11101 165 ILTAHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRI 221 (545)
T ss_pred EECCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCC
T ss_conf 202647789994188799999998678968999856999766754677876167763
No 105
>PRK06370 mercuric reductase; Validated
Probab=98.73 E-value=1.2e-07 Score=75.05 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=33.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 70029999790899999999997898599982885
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
++|||+||||||+|+++|+.+++.|.+|+|+|+..
T Consensus 3 ~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~ 37 (459)
T PRK06370 3 QRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGL 37 (459)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 71758999988899999999996899199996899
No 106
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=3.7e-08 Score=78.80 Aligned_cols=37 Identities=38% Similarity=0.459 Sum_probs=34.1
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 97-00299997908999999999978985999828855
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|. +|||+||||||+|+++|+.+++.|.+|+++|+.+.
T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~ 38 (472)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST 38 (472)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99778789999888999999999978996999963799
No 107
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=98.72 E-value=3.8e-08 Score=78.74 Aligned_cols=140 Identities=16% Similarity=0.282 Sum_probs=88.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCCCCC------CCEEEECH-HHHHHHHHCCCHHHHHHCCCCCCCEE--
Q ss_conf 2999979089999999999789859998-28855557------83688878-89999998899478886047123418--
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV-SPRSFLQD------LRTTMLMG-EGIDFLKEINVWDFLQDIAEPVSSFR-- 74 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~ii-E~~~~~~~------~r~~~l~~-~s~~~L~~lGl~~~l~~~~~~~~~~~-- 74 (384)
||+|||||.||+-+|+.++|.|.+|+++ .+.+.... .++ +.. .-++-++.||- +.........++
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG--~gkG~LvrEidaLgG---~m~~~aD~s~Iq~r 75 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGG--IAKGHLVREIDALGG---LMGKAADKTGIQFR 75 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCC--CCCCHHHHHHHHCCC---HHHHHHHHHHHHHH
T ss_conf 9799998789999999998689968999734243158865655687--530439999987258---99999999754565
Q ss_pred EEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE-EECCCCCEEEEE
Q ss_conf 9942576554544434502228753120111000000001236647983234205653026871789-830232012111
Q gi|254780842|r 75 LVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVT-ILLSTGQQIVGQ 153 (384)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~-v~~~dg~~i~ad 153 (384)
+.+.. .......+...+.|....+.+.+.+.+.+++.+....|.++...++.+. |.+++|+++.++
T Consensus 76 ~LN~s-------------kGpAv~a~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~ 142 (391)
T pfam01134 76 MLNTS-------------KGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAK 142 (391)
T ss_pred HHCCC-------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECC
T ss_conf 30446-------------78766685899879999999999997599939995464003026995999993799785144
Q ss_pred EEEEECCCC
Q ss_conf 235303754
Q gi|254780842|r 154 FLIGSDGRN 162 (384)
Q Consensus 154 lvVgADG~~ 162 (384)
-||-|.|-.
T Consensus 143 ~vIltTGTF 151 (391)
T pfam01134 143 AVVIATGTF 151 (391)
T ss_pred EEEEECCCC
T ss_conf 599931564
No 108
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.72 E-value=2.5e-08 Score=80.08 Aligned_cols=101 Identities=22% Similarity=0.370 Sum_probs=67.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCC--------CCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCE
Q ss_conf 02999979089999999999789--85999828855557--------836888788999999889947888604712341
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQD--------LRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSF 73 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~~--------~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~ 73 (384)
-||+||||||+|||+|..|||.| ++|+||||+=.+-- +..+.+..++..+|+++|+
T Consensus 22 ~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG~WgGGmlF~~~Vv~~pA~~~L~e~gI-------------- 87 (283)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGGSWGGGMLFSKIVVEKPAKEILDEFGI-------------- 87 (283)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCC--------------
T ss_conf 066798789746689999984299806999851102689866422245613651404688886598--------------
Q ss_pred EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHC-CHHHHHHHHHHHCCCCCCCCEE-EEEECCCCE
Q ss_conf 8994257655454443450222875312011100-0000001236647983234205-653026871
Q gi|254780842|r 74 RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNH-VLMESFAEKISQDPLIHCFDAL-ANEIQIGEE 138 (384)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~-~L~~~L~~~~~~~~~~~~~~~~-v~~i~~~~~ 138 (384)
+..+..+. |.|... .+...|..++-+.++.++++.. |.++-.+++
T Consensus 88 ~~~d~~dg--------------------~~Vads~e~~s~l~s~a~~aGn~Ki~~~~~vEDl~~R~~ 134 (283)
T TIGR00292 88 RYEDEGDG--------------------YVVADSAEFISTLASKALQAGNAKIFNGVSVEDLILRDD 134 (283)
T ss_pred CEEECCCC--------------------EEEEHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCC
T ss_conf 13356885--------------------487236768999999986588731433368887787688
No 109
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=98.70 E-value=3.3e-08 Score=79.20 Aligned_cols=56 Identities=34% Similarity=0.567 Sum_probs=45.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-------------CCCCCCEEE---ECHHHH--HHHHHCCC
Q ss_conf 029999790899999999997898599982885-------------555783688---878899--99998899
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS-------------FLQDLRTTM---LMGEGI--DFLKEINV 59 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~-------------~~~~~r~~~---l~~~s~--~~L~~lGl 59 (384)
-.|+||||||+|||+|.+||+.|++|+|+|.+. +.-|++|+. |=|.++ +||.+||+
T Consensus 2 ~~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GGCAgTFrRr~ftFDVGATQVAGLEpGGiH~riF~~L~~ 75 (499)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGL 75 (499)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCEEECCCCCCCHHHHHHHHCCC
T ss_conf 70699818726789999998539967999740127875443436874540455221367898579999985488
No 110
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=98.70 E-value=3.4e-07 Score=71.77 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=33.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7002999979089999999999789859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
..|||+|||+|.|||++|+.+++.|.+|+|+||....
T Consensus 33 ~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~ 69 (622)
T PTZ00139 33 HTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPT 69 (622)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7658799996699999999999769908999788999
No 111
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=3.3e-07 Score=71.80 Aligned_cols=38 Identities=39% Similarity=0.509 Sum_probs=35.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97002999979089999999999789859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|.++||+|||+|+|||++|+.+++.|.+|.|+++.+..
T Consensus 1 m~~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~ 38 (589)
T PRK08641 1 MAKKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98687899898699999999998759977999777889
No 112
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.69 E-value=5.8e-06 Score=62.67 Aligned_cols=48 Identities=13% Similarity=-0.040 Sum_probs=39.1
Q ss_pred HHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCC
Q ss_conf 647983234205653026871789830232012111235303754320
Q gi|254780842|r 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 118 ~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~v 165 (384)
...+.....++.|+.|..+++++.|++.||+++++|.||.|-..++.-
T Consensus 215 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~G~~~~ad~VI~a~p~~~l~ 262 (444)
T pfam01593 215 GLLGGRVRLNTRVRSITKEGDGVTVTTVDGEVIEADAVIVTVPLGVLK 262 (444)
T ss_pred HCCCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCHHHHH
T ss_conf 415986995897789999699699998899766448689857988874
No 113
>KOG1399 consensus
Probab=98.68 E-value=9e-08 Score=75.98 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=80.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 00299997908999999999978985999828855557836888788999999889947888604712341899425765
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRL 82 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (384)
.-+|+|||||||||++|..|.+.|++++++||.+... +.....++.-.... -+++.++.. .....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iG--GlW~y~~~~~~~~s--s~Y~~l~tn-----------~pKe~ 70 (448)
T KOG1399 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIG--GLWKYTENVEVVHS--SVYKSLRTN-----------LPKEM 70 (448)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC--CEEEECCCCCCCCC--CHHHHHHCC-----------CCHHH
T ss_conf 7854897856688899999987799836997058745--45860576565543--243421046-----------88444
Q ss_pred CCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCC--CCCCEEEEEECCCC-EEEEEECCCC----CEEEEEEE
Q ss_conf 54544434502228753120111000000001236647983--23420565302687-1789830232----01211123
Q gi|254780842|r 83 ITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLI--HCFDALANEIQIGE-EEVTILLSTG----QQIVGQFL 155 (384)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~--~~~~~~v~~i~~~~-~~v~v~~~dg----~~i~adlv 155 (384)
..-++..|... .+. +.-.++.+.+-|.+-+++-+.. ..++..+..++... +.+.|.+.++ +..-+|.|
T Consensus 71 ~~~~dfpf~~~---~~~--~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~V 145 (448)
T KOG1399 71 MGYSDFPFPER---DPR--YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAV 145 (448)
T ss_pred HCCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEE
T ss_conf 25799897545---711--1788889999999998735834626734657998405677416898148864058996389
Q ss_pred EEECCCC
Q ss_conf 5303754
Q gi|254780842|r 156 IGSDGRN 162 (384)
Q Consensus 156 VgADG~~ 162 (384)
|.|.|-+
T Consensus 146 vVctGh~ 152 (448)
T KOG1399 146 VVCTGHY 152 (448)
T ss_pred EECCCCC
T ss_conf 9955676
No 114
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=5e-07 Score=70.49 Aligned_cols=37 Identities=32% Similarity=0.482 Sum_probs=33.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7002999979089999999999789859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
++|||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus 11 ~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~~ 47 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 4778899996699999999998769958999788999
No 115
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.67 E-value=3.1e-07 Score=72.05 Aligned_cols=149 Identities=16% Similarity=0.249 Sum_probs=79.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CEEEECHHHHHHHHHCCCHHH-----------------
Q ss_conf 002999979089999999999789859998288555578---368887889999998899478-----------------
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL---RTTMLMGEGIDFLKEINVWDF----------------- 62 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~---r~~~l~~~s~~~L~~lGl~~~----------------- 62 (384)
.|||+|||+|.+||++|+..++.|.+|+|+||.+...-. ....+......+-++-|+-+.
T Consensus 60 ~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~~~d 139 (506)
T PRK06481 60 KYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 139 (506)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 84679989889999999999988997899968999995188855884526999999738999999999999973488888
Q ss_pred -----------------HHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf -----------------886047123418994257655454443450222875312011100000000123664798323
Q gi|254780842|r 63 -----------------LQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC 125 (384)
Q Consensus 63 -----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~ 125 (384)
+...+.++.... ..+. ........+.-+-.+ -..+.+.|.+.+.+.+...+
T Consensus 140 ~~l~~~~~~~s~~~idWl~~~G~~~~~~~---~~g~--------~~~~~~~~~~~g~~~-g~~lv~~l~~~~~~~gv~i~ 207 (506)
T PRK06481 140 KALLRYFVDNSASAIDWLDSMGIKLDNLT---ITGG--------MSEKRTHRPHDGSAV-GGYLVDGLLKNVQERKIPLF 207 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCC--------CCCCEEEECCCCCHH-HHHHHHHHHHHHHHCCCEEE
T ss_conf 99999999838999999997598466676---6788--------776703434887647-99999999999987798799
Q ss_pred CCEEEEEECCCCEEE---EEECCCCC--EEEEEEEEEECCCCC
Q ss_conf 420565302687178---98302320--121112353037543
Q gi|254780842|r 126 FDALANEIQIGEEEV---TILLSTGQ--QIVGQFLIGSDGRNS 163 (384)
Q Consensus 126 ~~~~v~~i~~~~~~v---~v~~~dg~--~i~adlvVgADG~~S 163 (384)
.+..++.+..+++.| .+...+++ .+.++-||-|.|-.+
T Consensus 208 ~~t~~~~L~~~dG~V~GV~~~~~~g~~~~i~akaVILATGGf~ 250 (506)
T PRK06481 208 VNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 250 (506)
T ss_pred ECCEEEEEEECCCCEEEEEEEECCCEEEEEECCEEEECCCCCC
T ss_conf 8778323230589378999996898499997356999778877
No 116
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=6.7e-07 Score=69.58 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=77.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CEE--EE---CHHHHH--HHHHC------CCH----
Q ss_conf 002999979089999999999789859998288555578-----368--88---788999--99988------994----
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL-----RTT--ML---MGEGID--FLKEI------NVW---- 60 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~-----r~~--~l---~~~s~~--~L~~l------Gl~---- 60 (384)
+|||+|||+|+|||++|+.+++.|.+|+|+||....... +++ ++ .+.+.+ +-+.+ +-.
T Consensus 12 e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~~~s~s~~AqGGi~aa~~~~~~Ds~~~h~~DTl~aG~~l~d~~~v~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 37989999569999999999874990799978899998546541005033378999998999999998635768899999
Q ss_pred ----------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHH---------CCHHHHHHHHHHHCC
Q ss_conf ----------7888604712341899425765545444345022287531201110---------000000012366479
Q gi|254780842|r 61 ----------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPN---------HVLMESFAEKISQDP 121 (384)
Q Consensus 61 ----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r---------~~L~~~L~~~~~~~~ 121 (384)
+.+...+.|...- ..+.....+. .-.+...+. ++.+.| +.+.+.|++++.+.+
T Consensus 92 ~l~~~a~~~i~~L~~~Gv~f~r~----~dG~~~~~~~-GGhs~~~~~---~~~~~R~~~~~d~tG~~i~~~L~~~~~~~~ 163 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRT----EEGKIYQRPF-GGMTTNYGE---GPPAQRTCAAADRTGHAILHTLYQQSLKHN 163 (598)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC----CCCCCCCCCC-CCEEECCCC---CCCEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 99998999999999859924328----9988612445-643201357---875047885067609999999999998639
Q ss_pred CCCCCCEEEEEECCCCEE----EE-EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 832342056530268717----89-8302320--12111235303754320
Q gi|254780842|r 122 LIHCFDALANEIQIGEEE----VT-ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 122 ~~~~~~~~v~~i~~~~~~----v~-v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
...+.+..+.++-.++++ +. +...+|+ .++|+-||-|.|-.+.+
T Consensus 164 i~~~~~~~~~~li~~~~G~v~Gv~~~~~~~G~~~~i~AkaVILATGG~g~~ 214 (598)
T PRK09078 164 AEFFIEYFALDLIMDDEGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred CEEEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCC
T ss_conf 879998899999982798599999998789958999707699887877766
No 117
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=5.3e-07 Score=70.31 Aligned_cols=147 Identities=20% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCEEEECHHHHHH-HHHCCCH-----------------
Q ss_conf 97002999979089999999999789--859998288555578368887889999-9988994-----------------
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQDLRTTMLMGEGIDF-LKEINVW----------------- 60 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~~~r~~~l~~~s~~~-L~~lGl~----------------- 60 (384)
|-++||+|||+|+|||++|+.+++.| .+|+|+||........ .....++.. +...+-.
T Consensus 1 ~~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s--~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l 78 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHS--VAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYL 78 (575)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH--HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 94089899996599999999999878998299997889999726--8887889988437999989999999999864688
Q ss_pred -----------------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHH---------CCHHHHHH
Q ss_conf -----------------7888604712341899425765545444345022287531201110---------00000001
Q gi|254780842|r 61 -----------------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPN---------HVLMESFA 114 (384)
Q Consensus 61 -----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r---------~~L~~~L~ 114 (384)
+.+...+.+.... .+.... .... -|+..+| ..+.+.|.
T Consensus 79 ~d~~lv~~l~~~~~~~v~~Le~~Gv~f~r~-----~dG~~~-------~~~~----gGhs~~R~~~~~~~tG~~i~~~L~ 142 (575)
T PRK05945 79 ADQDAVAILTQEAPDVIIDLEHLGVLFSRL-----PDGRIA-------QRAF----GGHSHNRTCYAADKTGHAILHELV 142 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCC-------CEEC----CCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 889999999999999999999869977608-----898880-------1103----671025554568883999999999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCEEEE----EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 236647983234205653026871789----8302320--12111235303754320
Q gi|254780842|r 115 EKISQDPLIHCFDALANEIQIGEEEVT----ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~v~~i~~~~~~v~----v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
+++++.++..+.+..+.++-.+++.+. +...+|+ .++|+-||-|.|--+.+
T Consensus 143 ~~~~~~gv~i~~~~~v~~Ll~~dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILEENEAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHCCCEEEEEEEEEEEEEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCCCC
T ss_conf 998546978994178888987099789999997168838999899899899998778
No 118
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=6.6e-07 Score=69.62 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=78.2
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCEE--EEC----H-HHHHH-----HHH-CCCH
Q ss_conf 97--00299997908999999999978985999828855557-----8368--887----8-89999-----998-8994
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-----LRTT--MLM----G-EGIDF-----LKE-INVW 60 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-----~r~~--~l~----~-~s~~~-----L~~-lGl~ 60 (384)
|+ +|||+|||+|+|||++|+.+++.|.+|+|+||...... .+++ .+. | .+.+. ++. -|+-
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~~~s~s~~a~ggi~a~~~~~~~~~Ds~~~~~~Dt~~~G~~l~ 80 (566)
T PRK06452 1 MEKLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTIKGGDYLV 80 (566)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 96687078999974999999999987799789997889999753686682068635799999899999999998546888
Q ss_pred ----------------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHH--HCCHHHHHHHHHHHCCC
Q ss_conf ----------------788860471234189942576554544434502228753120111--00000000123664798
Q gi|254780842|r 61 ----------------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIP--NHVLMESFAEKISQDPL 122 (384)
Q Consensus 61 ----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~--r~~L~~~L~~~~~~~~~ 122 (384)
+.+...+.|...- .+.... ..+. ...+.+..-+... =..+.+.|.+++.+.+.
T Consensus 81 d~~~v~~l~~~~~~~i~~L~~~Gv~f~r~-----~dG~~~---~~~~-gghs~~R~~~~~d~tG~~i~~~l~~~~~~~~i 151 (566)
T PRK06452 81 DQDAAELLSYKSGEIVELLERWGALFNRQ-----PDGRVA---LRYF-GGQTYPRTRFVGDKTGMALLHTLYERTSGLNV 151 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCEE---EEEC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999999998999999999839986528-----999884---4334-77551335742887668999999999862997
Q ss_pred CCCCCEEEEEECCCCEEEE----EECCCCC--EEEEEEEEEECCCCCCCC
Q ss_conf 3234205653026871789----8302320--121112353037543200
Q gi|254780842|r 123 IHCFDALANEIQIGEEEVT----ILLSTGQ--QIVGQFLIGSDGRNSSVR 166 (384)
Q Consensus 123 ~~~~~~~v~~i~~~~~~v~----v~~~dg~--~i~adlvVgADG~~S~vR 166 (384)
..+-+..+.++-.+++.+. +...+|+ .++|+-||-|.|--+.+-
T Consensus 152 ~~~~~~~~~~Ll~~~~~v~Gav~~d~~~~~~~~~~AkaVVLATGG~g~ly 201 (566)
T PRK06452 152 DFYNEWFAWDLVRDEKRVAGVVAMDMRSMEPFFFKAKAVVIASGGMGMLY 201 (566)
T ss_pred EEEEEEEEEEEEECCCEEEEEEEEECCCCEEEEEECCEEEEECCCCCEEE
T ss_conf 89987899998853986889999976899599998188999178513443
No 119
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.63 E-value=3.7e-07 Score=71.48 Aligned_cols=58 Identities=36% Similarity=0.504 Sum_probs=42.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECH---HHHHHHHHCCCHHHHH
Q ss_conf 0029999790899999999997898599982885555783688878---8999999889947888
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMG---EGIDFLKEINVWDFLQ 64 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~---~s~~~L~~lGl~~~l~ 64 (384)
.|||+||||||+|..+|+-.||.|.+|+|+||+.. +++.|+- +|..+|+.-.+++.++
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~l----GGtCLN~GCIPtKaLL~~ae~~~~~~ 61 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKL----GGTCLNVGCIPTKALLHSAEVYDEIK 61 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC----CCEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 95189987787727999999864980899980356----87487277675478877667899999
No 120
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.63 E-value=4.6e-07 Score=70.76 Aligned_cols=148 Identities=21% Similarity=0.220 Sum_probs=74.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 970029999790899999999997898599982885555783688878---89999998899478886047123418994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMG---EGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~---~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|++||++|||+||+|.++|+.+++.|.+|.++|+... .++..++- ++..+|..-.+.+.++.... ..++.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~---lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~-~~Gi~--- 74 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER---LGGTCLNVGCIPSKALLHAAEVIEEARHAAK-EYGIS--- 74 (454)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC---CCCEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCEE---
T ss_conf 8515489989777799999999967997799930698---6765574673144999999999999864142-36520---
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHC-CHHH---HHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEE
Q ss_conf 257655454443450222875312011100-0000---001236647983234205653026871789830232012111
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNH-VLME---SFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQ 153 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~-~L~~---~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~ad 153 (384)
.... .++..+ ++.|. ...+ .-.+.+.+...+..+.....-+. ++.+.|..++.++++++
T Consensus 75 ~~~~-------~~d~~~--------~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~ 137 (454)
T COG1249 75 AEVP-------KIDFEK--------LLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITAD 137 (454)
T ss_pred CCCC-------CCCHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC--CCEEEEECCCCEEEEEC
T ss_conf 5778-------538999--------999999999987677999997489889998999888--99899906875499827
Q ss_pred EEEEECCCCCCCCCCCCCC
Q ss_conf 2353037543200037873
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYG 172 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~ 172 (384)
.+|-|.|.+...-...+++
T Consensus 138 ~iiIATGS~p~~~~~~~~~ 156 (454)
T COG1249 138 NIIIATGSRPRIPPGPGID 156 (454)
T ss_pred EEEEECCCCCCCCCCCCCC
T ss_conf 8999069987789988988
No 121
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.63 E-value=7.9e-07 Score=69.04 Aligned_cols=152 Identities=22% Similarity=0.201 Sum_probs=77.4
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CEE--EECHHHHHH-----HHH---CCC-----
Q ss_conf 97-002999979089999999999789859998288555578-----368--887889999-----998---899-----
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL-----RTT--MLMGEGIDF-----LKE---INV----- 59 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~-----r~~--~l~~~s~~~-----L~~---lGl----- 59 (384)
|| .+||+|||+|+|||++|+.++ .|.+|+|+||.+..... +++ +......+. ++. ++-
T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d~~lv~ 79 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNNLEAVK 79 (433)
T ss_pred CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 986487899995699999999617-8998899978899997668760272473289987999999998657878899999
Q ss_pred ---------HHHHHHCCCCCCCE----EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC-
Q ss_conf ---------47888604712341----8994257655454443450222875312011100000000123664798323-
Q gi|254780842|r 60 ---------WDFLQDIAEPVSSF----RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC- 125 (384)
Q Consensus 60 ---------~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~- 125 (384)
.+.+...+.+.+.- ..... ...+.+ ...... +.- -..+.+.|.+++.+.+++.+
T Consensus 80 ~l~~~s~~ai~~L~~~Gv~f~r~~~g~~~~r~--GgHs~~-R~~~~~----d~t-----G~~i~~~L~~~~~~~~~I~i~ 147 (433)
T PRK06175 80 ILANESIENINKLIDMGLNFDKDEKELNYTKE--GAHSVN-RIVHFK----DYT-----GKKVEKILLKKVKKRKNITII 147 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECC--CCCCCC-CCCCCC----CCC-----HHHHHHHHHHHHHHCCCCEEE
T ss_conf 99998899999999759862116887245414--656678-523358----862-----999999999999717996799
Q ss_pred CCEEEEEECCCCEEEE--EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 4205653026871789--8302320--12111235303754320
Q gi|254780842|r 126 FDALANEIQIGEEEVT--ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 126 ~~~~v~~i~~~~~~v~--v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
.+..+.++-.+++.+. +.+.+|+ .++++-||-|.|--+.+
T Consensus 148 ~~~~~~~Li~~~~~v~G~v~~~~g~~~~i~AkaVILATGG~g~l 191 (433)
T PRK06175 148 ENCELVDIIENDNTCIGGILLKDNKQINIYSKVTILATGGIGGL 191 (433)
T ss_pred EEEEEEEEEEECCEEEEEEEEECCCEEEEEECEEEECCCCCCCC
T ss_conf 73887887873898999999957978999836699867986543
No 122
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.62 E-value=1.4e-06 Score=67.32 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=155.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCEE--EECHH---HHHHHHHCCCHHHHHHC-CCCC
Q ss_conf 029999790899999999997898599982885555-------78368--88788---99999988994788860-4712
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------DLRTT--MLMGE---GIDFLKEINVWDFLQDI-AEPV 70 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------~~r~~--~l~~~---s~~~L~~lGl~~~l~~~-~~~~ 70 (384)
|||||||||+-|+.+|..|||++.+++++|+-.++. +.|.| +..-. ...+.+.--+|-.++.. +.++
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~ 80 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL 80 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95799817613568999987538617887515677678887877100010267863578899999999999862147264
Q ss_pred C-CEEEEECCCCCC----------------------------CCC-CCCCCCHHCCC-CCCCCHHHHCCHHHHHHHHHHH
Q ss_conf 3-418994257655----------------------------454-44345022287-5312011100000000123664
Q gi|254780842|r 71 S-SFRLVDITDRLI----------------------------TAP-DAIFHSSEIGL-DAFGYNIPNHVLMESFAEKISQ 119 (384)
Q Consensus 71 ~-~~~~~~~~~~~~----------------------------~~~-~~~~~~~~~~~-~~~g~~i~r~~L~~~L~~~~~~ 119 (384)
. .-.....+-+.. ..+ .+.+.....+. +..|=++.-..-.+++.+.+..
T Consensus 81 h~qT~~l~~G~k~~s~~l~~~~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~~ka~~a~q~l~~~ 160 (401)
T TIGR01377 81 HRQTGLLLLGPKENSQSLKTIVATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYAEKALRALQELAEA 160 (401)
T ss_pred ECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECHHHHHHHHHHHHHH
T ss_conf 31345156315778605899999886255230331641232004762340686078874688746227899999999987
Q ss_pred CCCCCCCCEEEEEECCC----CEEEEEECCCCCEEEEEEEEEECCCCC--CCCCCCC-CCCCCCCCCEEEEEEEECCCCC
Q ss_conf 79832342056530268----717898302320121112353037543--2000378-7332222430478764114788
Q gi|254780842|r 120 DPLIHCFDALANEIQIG----EEEVTILLSTGQQIVGQFLIGSDGRNS--SVRRQMG-YGENKWSYPQKALVLNFQHSMP 192 (384)
Q Consensus 120 ~~~~~~~~~~v~~i~~~----~~~v~v~~~dg~~i~adlvVgADG~~S--~vR~~l~-~~~~~~~y~~~~l~~~~~~~~~ 192 (384)
.+.+.+.+.+|.+++.+ ++-|++++.. ++++|+=+|..=|+.. ++=+.++ ++..-.+|.+. ||-++...+
T Consensus 161 ~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~-~sy~a~~lvvtaGaW~s~kLl~~l~Gie~Plqplr~~--Vcywr~~~~ 237 (401)
T TIGR01377 161 HGAIVRDGTKVVEIKPDGESGELLVTVKTTK-DSYQAKKLVVTAGAWTSNKLLKKLGGIELPLQPLRIN--VCYWREKEP 237 (401)
T ss_pred CCCEEECCCEEEEEEECCCCCCCEEEEEEEC-CEEECCEEEEECCCCHHHHHCCCCCCEECCCCCCEEE--EEEEEEECC
T ss_conf 4968734860366542676789548999727-7032135789538861234313014232676421013--647874227
Q ss_pred CCE-EE-EEEC---C---CCC-CCCC-CCCCCC--CEEEE----EEECHHHHHHHHH----HHHHHHHHHHHHCCCCCC-
Q ss_conf 611-78-8722---7---875-4210-001232--01126----7507567324553----223467887763067546-
Q gi|254780842|r 193 HNG-RC-VEFH---K---SLG-TITQ-IPLREN--FSSLV----WIMESQEADFYYK----LPVNEIARRLEQYLYPVI- 251 (384)
Q Consensus 193 ~~~-~a-~~~f---~---~~G-~~a~-lP~~~~--~~~iv----w~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~- 251 (384)
+.. .+ -+.| . ..+ .+-- +|..+. ..-+. -.++|++.+.-.. .+.+.+.+.+++++|..-
T Consensus 238 ~~~~~~id~~fP~f~~~~~~~H~iYgG~Ps~eypGL~k~~~h~G~~~DPd~r~~~~g~~~~~d~~~L~~f~~~~~pg~~d 317 (401)
T TIGR01377 238 KSEGVSIDQAFPCFLVLGLNPHHIYGGLPSLEYPGLMKVAYHHGQQIDPDERDCEFGFADIEDVQILKKFVRDHLPGLKD 317 (401)
T ss_pred CCCCCEECCCCCEEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 64362223557735653588844741537888984068987068735865467888856788999999999985788656
Q ss_pred -CCCCCCEEEEEEC---CCCCCCHHHH--H-CCCCE-ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHH
Q ss_conf -7621110223202---2334304565--3-79421-01100113844565321121238999999852579-9079999
Q gi|254780842|r 252 -GKIEVVTDVQIFQ---LSGMISHCFG--K-KRVVL-VGEAAHALPPICGQGLNLSMRDVIILLNLFQSEHM-SFRAIGN 322 (384)
Q Consensus 252 -~~~~~~~~~~~~p---l~~~~~~~~~--~-~rv~l-iGDAAH~~~P~~GqG~n~ai~Da~~L~~~l~~~~~-~~~~~l~ 322 (384)
.+.. ..+...|. =...+.+..- . .+|++ .| |.|+|..+|=-=..+|++.=-+-.. .+.--++
T Consensus 318 s~ep~-~~~~CMYt~TPDE~FviD~hpG~~~~nvvigaG--------FSGHGFk~apvVG~iLa~lam~~~~GGG~~d~~ 388 (401)
T TIGR01377 318 SEEPK-ATEVCMYTKTPDEHFVIDLHPGKYYDNVVIGAG--------FSGHGFKLAPVVGKILAELAMKLKPGGGSYDLA 388 (401)
T ss_pred CCCCC-CEEECCCCCCCCCCEEEECCCCCCCCCEEEECC--------CCCCCCEECHHHHHHHHHHHCCCCCCCCCEEHH
T ss_conf 65640-100046788666044651478820372379635--------677541405478889998751246898620113
Q ss_pred HHHHHH
Q ss_conf 999986
Q gi|254780842|r 323 RYHAMR 328 (384)
Q Consensus 323 ~Y~~~R 328 (384)
.|.-.|
T Consensus 389 ~Fs~~r 394 (401)
T TIGR01377 389 IFSLRR 394 (401)
T ss_pred HHCCCC
T ss_conf 210686
No 123
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.61 E-value=6.8e-08 Score=76.87 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-EEEEECCCCCEEEEEEEEEECCC
Q ss_conf 00000001236647983234205653026871-78983023201211123530375
Q gi|254780842|r 107 HVLMESFAEKISQDPLIHCFDALANEIQIGEE-EVTILLSTGQQIVGQFLIGSDGR 161 (384)
Q Consensus 107 ~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~v~v~~~dg~~i~adlvVgADG~ 161 (384)
..|.++|.+.+++.+....++..|++|..+++ +++++..+|+.+++|.||.+=..
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCEEEEEECCCCEEECCEEEECCCH
T ss_conf 99999999999974939967871359997189058998067607514689986887
No 124
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.60 E-value=7.5e-07 Score=69.19 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=79.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEC---------HHH--------HHHHHHC-----CCH
Q ss_conf 002999979089999999999789859998288555578368887---------889--------9999988-----994
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLM---------GEG--------IDFLKEI-----NVW 60 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~---------~~s--------~~~L~~l-----Gl~ 60 (384)
.+||+|||+|.|||++|+..++.|.+|+|+||.+..--.+...++ +.. -++++.+ |..
T Consensus 4 ~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 83 (456)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (456)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 38889999889999999999987990999983277788803055386445536866542688999999999998728987
Q ss_pred H-----HHHHCCCC-CC-----CEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 7-----88860471-23-----4189942576554544434502228753120111000000001236647983234205
Q gi|254780842|r 61 D-----FLQDIAEP-VS-----SFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDAL 129 (384)
Q Consensus 61 ~-----~l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~ 129 (384)
+ .+...+.. +. .+.+........ .. .+......+ .-..+.+.|.+.+.+.+...++++.
T Consensus 84 d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~------~~-~~~~~~~~g---~G~~~~~~l~~~~~~~gv~i~~~t~ 153 (456)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGAL------HV-ARTNAFFMG---GGKALVNALYRSAERLGVEIRYDAP 153 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC------CC-CCCCCCCCC---CHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf 6999999997239999999971961356688864------44-798341479---8799999999999973997993888
Q ss_pred EEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 65302687178983023201211123530375432
Q gi|254780842|r 130 ANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 130 v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
++++..+++.|+-.....++++++=||-|.|-.+.
T Consensus 154 ~~~Li~d~g~V~Gv~~~~~~i~AkaVVLAtGGf~~ 188 (456)
T PRK08274 154 VTALELDDGRFVAARAGAERIRARAVVLAAGGFEA 188 (456)
T ss_pred EEEEEEECCEEEEEEECEEEECCCEEEEECCCCCC
T ss_conf 89999909999999925389716869995789888
No 125
>PRK07121 hypothetical protein; Validated
Probab=98.60 E-value=1.1e-06 Score=67.96 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=33.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|||+|||+|.|||++|+..++.|.+|+|+||.+..
T Consensus 20 e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~ 55 (491)
T PRK07121 20 EADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGA 55 (491)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 769899896799999999999889928999548999
No 126
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=1.6e-06 Score=66.87 Aligned_cols=149 Identities=25% Similarity=0.339 Sum_probs=76.0
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCC-----EE--EECH----HHHH-----HHHHC-C
Q ss_conf 97--00299997908999999999978---98599982885555783-----68--8878----8999-----99988-9
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFLQDLR-----TT--MLMG----EGID-----FLKEI-N 58 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~~~~r-----~~--~l~~----~s~~-----~L~~l-G 58 (384)
|+ +|||+|||+|+|||++|+.+++. |++|+|+||........ .+ .+.+ .+.+ .++.- |
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~~~s~s~~a~gG~~a~~~~~~~~Ds~~~~~~Dt~~~g~~ 80 (582)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQAMRSHSVSAEGGTAAVLYPEKTGDSPELHAYDTVKGSDF 80 (582)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 97787068999973999999999998538998699997989999708999877998717888999989999999985368
Q ss_pred CH----------------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHH---------CCHHHHH
Q ss_conf 94----------------7888604712341899425765545444345022287531201110---------0000000
Q gi|254780842|r 59 VW----------------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPN---------HVLMESF 113 (384)
Q Consensus 59 l~----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r---------~~L~~~L 113 (384)
+- +.+...+.+...- .+. .+.....+ |+..+| ..+...|
T Consensus 81 l~d~~lv~~l~~~a~~~v~~le~~Gv~f~r~-----~~G-------~~~~~~~g----Ghs~~R~~~~~d~tG~~i~~~l 144 (582)
T PRK06069 81 LADQDAVEVLVREAPEEIRFLDHWGVPWSRD-----PDG-------RISQRPFG----GMSFPRTTFAADKTGFYIMSTL 144 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEC-----CCC-------CEEEEECC----CCCCCEEECCCCCCCHHHHHHH
T ss_conf 8889999999998999999999769971068-----999-------88752158----7034500036787539999999
Q ss_pred HHHHHHCCCCCCCC-EEEEEECCCCEEE---E-EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 12366479832342-0565302687178---9-8302320--12111235303754320
Q gi|254780842|r 114 AEKISQDPLIHCFD-ALANEIQIGEEEV---T-ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 114 ~~~~~~~~~~~~~~-~~v~~i~~~~~~v---~-v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
.+++.+...+.+++ ..++++-.+++.+ . +...+|+ .++|+-||-|.|-.+.+
T Consensus 145 ~~~~~~~~gv~~~~~~~vt~Ll~~~g~v~Ga~~~d~~~G~~~~i~AkaVVlATGG~g~l 203 (582)
T PRK06069 145 YSRALRFDNIHFYHEHFVTSLIVENGVFKGVTAIDLRRGEFKVFQAKAGIIATGGAGRL 203 (582)
T ss_pred HHHHHHCCCCEEEEEEEEEEEEECCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCC
T ss_conf 99998469948997789888874399899999997689829999825599898867546
No 127
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.59 E-value=8.7e-07 Score=68.73 Aligned_cols=38 Identities=37% Similarity=0.476 Sum_probs=34.4
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97--002999979089999999999789859998288555
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|+ .|||+|||+|+|||++|+.++++|.+|+|++|.+..
T Consensus 1 m~~i~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~~ 40 (657)
T PRK08626 1 MKIIYTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPAK 40 (657)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9737516899996599999999999759957999688899
No 128
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.59 E-value=5.4e-07 Score=70.27 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=36.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-----CCCCEEEEC
Q ss_conf 002999979089999999999789859998288555-----578368887
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-----QDLRTTMLM 47 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-----~~~r~~~l~ 47 (384)
.|||+||||||+|.++|+.+++.|.+|.++|+..+. ...++..++
T Consensus 41 dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln 90 (541)
T PTZ00052 41 DYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVN 90 (541)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 79989999788999999999988990999942455666871779501178
No 129
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.57 E-value=1.7e-06 Score=66.53 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=75.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCC------CCEEEEC--HHHHH-----HHHH---CC------
Q ss_conf 00299997908999999999978--985999828855557------8368887--88999-----9998---89------
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQD------LRTTMLM--GEGID-----FLKE---IN------ 58 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~------~r~~~l~--~~s~~-----~L~~---lG------ 58 (384)
++||+|||+|+|||++|+.+++. |.+|+|+||...... .+..+.. ..+.+ .++. ++
T Consensus 4 ~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~~~s~s~~a~GG~~a~~~~~Ds~e~~~~Dt~~~G~~l~d~~lv~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 55689999669999999999986899859999789989986187761250447999999999999999706788899999
Q ss_pred --------CHHHHHHCCCCCCC-----EEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf --------94788860471234-----18994257655454443450222875312011100000000123664798323
Q gi|254780842|r 59 --------VWDFLQDIAEPVSS-----FRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC 125 (384)
Q Consensus 59 --------l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~ 125 (384)
..+.+...+.|... +......+ .+.+... .+. +.-| ..+.+.|.+.+.+.+++..
T Consensus 84 ~l~~~~~~~i~~L~~~Gv~f~r~~~G~~~~~~~gG--hs~~R~~-~~~----d~tG-----~~i~~~l~~~~~~~~~i~~ 151 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG--MKIERTW-FAA----DKTG-----FHMLHTLFQTSLQYPQIQR 151 (582)
T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCC--CCCCEEE-ECC----CCCH-----HHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999999849982157998775430487--1046123-358----9866-----9999999999985699789
Q ss_pred CC-EEEEEECCCCEEEE----EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 42-05653026871789----8302320--12111235303754320
Q gi|254780842|r 126 FD-ALANEIQIGEEEVT----ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 126 ~~-~~v~~i~~~~~~v~----v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
++ ..+.++-.+++.+. +...+|+ .++|+-||-|.|-.+.+
T Consensus 152 ~~~~~~~~Ll~~dg~v~Ga~~~d~~~G~~~~i~AkaVILATGG~g~l 198 (582)
T PRK09231 152 FDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred EEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECEEEECCCCCCCC
T ss_conf 97599988896398089999998899968999737699867887655
No 130
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.57 E-value=5.1e-07 Score=70.46 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=31.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 029999790899999999997898599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|||+||||||+|+++|+.+++.|.+|+|+|+..
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~ 34 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 819998748899999999997879599996799
No 131
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.57 E-value=8e-07 Score=69.00 Aligned_cols=36 Identities=31% Similarity=0.569 Sum_probs=32.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 700299997908999999999978985999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
++|||+|||+|+|||++|+.+++.|.+|+|+++.+.
T Consensus 32 ~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~~~ 67 (638)
T PRK07573 32 RKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQDS 67 (638)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 648889999669999999999974995699992289
No 132
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.57 E-value=9.9e-07 Score=68.30 Aligned_cols=38 Identities=42% Similarity=0.585 Sum_probs=34.7
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97--002999979089999999999789859998288555
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|+ .|||+|||+|.|||++|+..++.|.+|+|+||.+..
T Consensus 1 ~~tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~ 40 (567)
T PRK12842 1 MNELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVF 40 (567)
T ss_pred CCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9873059699896889999999999879908999779988
No 133
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=1.9e-07 Score=73.60 Aligned_cols=34 Identities=47% Similarity=0.711 Sum_probs=32.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 0029999790899999999997898599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|||+|||+||+|+++|..+++.|.+|+|+|+..
T Consensus 4 dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~ 37 (462)
T PRK06416 4 DYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 7998999988899999999996899399996799
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.7e-06 Score=66.68 Aligned_cols=36 Identities=39% Similarity=0.592 Sum_probs=33.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
+|||+|||+|+|||++|+.+++.|.+|+|+||....
T Consensus 8 e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~ 43 (631)
T PRK07803 8 EYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFG 43 (631)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 059899996499999999998769987999789999
No 135
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.53 E-value=1e-06 Score=68.25 Aligned_cols=34 Identities=47% Similarity=0.669 Sum_probs=31.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
||+|||+|+||+++|+.+++.|.+|+|+||.+..
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~ 34 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPF 34 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9899988699999999999789948999789999
No 136
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1.4e-06 Score=67.20 Aligned_cols=152 Identities=20% Similarity=0.332 Sum_probs=75.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----CEE--EECHH-HHH-----HHHH-CCC--------
Q ss_conf 7002999979089999999999789859998288555578-----368--88788-999-----9998-899--------
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL-----RTT--MLMGE-GID-----FLKE-INV-------- 59 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~-----r~~--~l~~~-s~~-----~L~~-lGl-------- 59 (384)
|+|||+|||+|+|||++|+.+++ +.+|+|++|.+..... +++ ++.|. +.+ .++. -|+
T Consensus 9 ~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~d~~~v~~ 87 (556)
T PRK07395 9 SQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF 87 (556)
T ss_pred CCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 65978999963999999997235-99889998999999626676360517279999999999999995588888999999
Q ss_pred --------HHHHHHCCCCCCCE--EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCE-
Q ss_conf --------47888604712341--8994257655454443450222875312011100000000123664798323420-
Q gi|254780842|r 60 --------WDFLQDIAEPVSSF--RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDA- 128 (384)
Q Consensus 60 --------~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~- 128 (384)
.+.+...+.+...- ..........+.+... ... +. .=..+.+.|.+++.+.+++.+++.
T Consensus 88 l~~~a~~~i~~L~~~Gv~f~r~~~~~~~~~~gghs~~R~~-~~~----d~-----tG~~i~~~L~~~~~~~~~I~i~~~~ 157 (556)
T PRK07395 88 LVEQAPEAIASLVELGVAFDRHGQHLALTLEAAHSRPRVL-HAA----DT-----TGRAIVTTLTEQVLERPNIEIISQA 157 (556)
T ss_pred HHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCC-CCC----CC-----CCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999999999769970557994400121686666124-457----77-----5589999999999967995698889
Q ss_pred EEEEECCC--CE---EEEEECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 56530268--71---7898302320--12111235303754320
Q gi|254780842|r 129 LANEIQIG--EE---EVTILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 129 ~v~~i~~~--~~---~v~v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
.+.++..+ ++ ++. .+.+|+ .++|+-||-|.|--+.+
T Consensus 158 ~~~~Ll~~~~~g~v~Gv~-~~~~g~~~~i~AkaVILATGG~g~l 200 (556)
T PRK07395 158 LALDLWLEPETGRCQGIS-LLYQGQITWLRAGAVILATGGGGQV 200 (556)
T ss_pred EEEEEEEECCCCEEEEEE-EEECCCEEEEECCEEEECCCCCCCC
T ss_conf 999999955898799999-9989969999789899899987112
No 137
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.51 E-value=6.6e-07 Score=69.61 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=28.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 70029999790899999999997898599982885
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|||||+||||||+|.++|..+ .|.+|+|+|+..
T Consensus 1 k~YDviVIGaGpgG~~~a~~~--ag~kValvEk~~ 33 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT 33 (452)
T ss_pred CCCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC
T ss_conf 947689999868999999998--299099997899
No 138
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.50 E-value=1.6e-06 Score=66.73 Aligned_cols=35 Identities=37% Similarity=0.449 Sum_probs=31.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
+|||+|||+|+|||++|+.++.. .+|+|++|.+..
T Consensus 8 ~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~ 42 (535)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLS 42 (535)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC
T ss_conf 28989999539999999974038-988999788999
No 139
>PRK13748 putative mercuric reductase; Provisional
Probab=98.50 E-value=2.2e-06 Score=65.81 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=32.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 0029999790899999999997898599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|||+|||+||+|.++|+..++.|.+|+++|+..
T Consensus 98 ~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~ 131 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8768998958899999999997899799994799
No 140
>PRK08275 putative oxidoreductase; Provisional
Probab=98.49 E-value=1.8e-06 Score=66.36 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=76.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCE------E--EE-----CHHHH--HHHHH-CCC-----
Q ss_conf 00299997908999999999978--985999828855557836------8--88-----78899--99998-899-----
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQDLRT------T--ML-----MGEGI--DFLKE-INV----- 59 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~~r~------~--~l-----~~~s~--~~L~~-lGl----- 59 (384)
++||+|||+|+|||.+|+.+++. |.+|+|++|.+....... + ++ +|... ..++. -|+
T Consensus 9 ~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~~sg~~~~~~~g~~~~~~~~~~~~e~~~~dt~~ag~gl~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 72889999719999999999986898979999799989881799998888873468999999999999985389877999
Q ss_pred -----------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHH---HCCHHHHHHHHHHHCCCCCC
Q ss_conf -----------4788860471234189942576554544434502228753120111---00000000123664798323
Q gi|254780842|r 60 -----------WDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIP---NHVLMESFAEKISQDPLIHC 125 (384)
Q Consensus 60 -----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~---r~~L~~~L~~~~~~~~~~~~ 125 (384)
.+.+...+.+...- .+. .+...... ..-.+..+ -..+.+.|.+.+++.+...+
T Consensus 89 v~~lv~~a~~~i~~L~~~Gv~f~r~-----~~G-------~~~~~~~~-~~~~~~~~~~~G~~i~~~l~~~~~~~~i~i~ 155 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKD-----ETG-------DYAVKKVH-HMGSYVLPMPEGHDIKKVLYRQLKRARVLIT 155 (554)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-----CCC-------CCCHHCCC-CCCCEECCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999998999999999769987738-----999-------86001103-6776432169869999999999986599699
Q ss_pred CCEEEEEECCCCE-EE---E-EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 4205653026871-78---9-8302320--12111235303754320
Q gi|254780842|r 126 FDALANEIQIGEE-EV---T-ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 126 ~~~~v~~i~~~~~-~v---~-v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
.+..++++-.+++ .+ . +...+|+ .++|+-||-|.|--+.+
T Consensus 156 ~~~~~~~Ll~d~dGrv~Ga~~~d~~~g~~~~~~AkaVVLATGG~g~~ 202 (554)
T PRK08275 156 NRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred EEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCEEEECCCCCCC
T ss_conf 87999999985899399999994479839999338279915764566
No 141
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.48 E-value=1.6e-07 Score=74.09 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-|+|||+|||||++|-.|.|+||.|+||||++-
T Consensus 153 kVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR 185 (517)
T TIGR01317 153 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 185 (517)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 689975675799999998535883899743678
No 142
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.48 E-value=1.4e-06 Score=67.11 Aligned_cols=39 Identities=33% Similarity=0.495 Sum_probs=34.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCC
Q ss_conf 970029999790899999999997898--599982885555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSFLQ 39 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~~~ 39 (384)
|++++|+|||||+||+++|..|++.|. +++|+++.+..+
T Consensus 1 M~~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~P 41 (400)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (400)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 99672999977599999999998069499799998999998
No 143
>PRK04965 nitric oxide reductase; Provisional
Probab=98.45 E-value=1.8e-06 Score=66.34 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCC--CCCCCCCC
Q ss_conf 001236647983234205653026871789830232012111235303754320--00378733
Q gi|254780842|r 112 SFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSV--RRQMGYGE 173 (384)
Q Consensus 112 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~v--R~~l~~~~ 173 (384)
.|.+.+.+.+...+.+..+..++..+++..++++||+++.+|+||-|-|.+.++ .+..|+..
T Consensus 188 ~l~~~l~~~GV~~~~~~~v~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~Gv~Pnt~la~~aGl~~ 251 (378)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTESGIRATLDDGRSIEVDAVIAAAGLRPNTALARRAGLAV 251 (378)
T ss_pred HHHHHHHHCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCCCCCHHHHHHCCCCC
T ss_conf 9999999789099969889999965998999985997998499998947754827898669866
No 144
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.44 E-value=4.5e-07 Score=70.79 Aligned_cols=36 Identities=39% Similarity=0.590 Sum_probs=33.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|||+|||+|.|||++|+..+..|.+|+||||.+..
T Consensus 6 e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~ 41 (552)
T PRK12844 6 TVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKV 41 (552)
T ss_pred EECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 209799896789999999999889968999889996
No 145
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=5.1e-06 Score=63.10 Aligned_cols=146 Identities=24% Similarity=0.289 Sum_probs=74.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC------CE--EEECH-HHHH-----HHHH-CCCH-------
Q ss_conf 002999979089999999999789859998288555578------36--88878-8999-----9998-8994-------
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL------RT--TMLMG-EGID-----FLKE-INVW------- 60 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~------r~--~~l~~-~s~~-----~L~~-lGl~------- 60 (384)
++||+|||+|+|||++|+.+++.| .|+|+++....... .+ ..+.+ .+.+ .++. -|+-
T Consensus 7 ~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l~d~~lv~~ 85 (539)
T PRK06263 7 ITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (539)
T ss_pred ECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 649899995399999999998259-9799977898999847888667715089999999999999985268888999999
Q ss_pred ---------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHH---------CCHHHHHHHHHHHCCC
Q ss_conf ---------7888604712341899425765545444345022287531201110---------0000000123664798
Q gi|254780842|r 61 ---------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPN---------HVLMESFAEKISQDPL 122 (384)
Q Consensus 61 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r---------~~L~~~L~~~~~~~~~ 122 (384)
+.+...+.+.... .+. .+.....+ |+..+| ..+.+.|.+++.+.++
T Consensus 86 l~~~a~~~v~~L~~~G~~f~~~-----~~g-------~~~~~~~g----g~s~~R~~~~~~~tG~~i~~~L~~~~~~~gv 149 (539)
T PRK06263 86 LVKEAPKRLKDLEKFGAVFDRT-----EDG-------EIAQRPFG----GQSFNRTCYAGDRTGHEMMMGLMEYLIKERI 149 (539)
T ss_pred HHHHHHHHHHHHHHHCCCCCCC-----CCC-------CEEEEECC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999999839985127-----998-------67310047----8544432235776619999999999861697
Q ss_pred CCCCCEEEEEECCCC-EEE----EEECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 323420565302687-178----98302320--12111235303754320
Q gi|254780842|r 123 IHCFDALANEIQIGE-EEV----TILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 123 ~~~~~~~v~~i~~~~-~~v----~v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
..+.+..+.++-.++ +.+ .+...+|+ .++|+-||-|.|--+.+
T Consensus 150 ~i~~~~~~~~Ll~~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~l 199 (539)
T PRK06263 150 KILEEVMAIKLLVDELGKVFGAVFLDLRNGDIVPIYAKSTILATGGAGQL 199 (539)
T ss_pred EEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEEECEEEECCCCCCCC
T ss_conf 79951599999981799699999997789829999605699898987656
No 146
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=2.9e-06 Score=64.87 Aligned_cols=36 Identities=31% Similarity=0.611 Sum_probs=33.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7002999979089999999999789859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
+.|||+|||+| +|+++|+..++.|.+|+|+||.+..
T Consensus 15 ~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~ 50 (566)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYV 50 (566)
T ss_pred CEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 55497998846-9999999999889938999689999
No 147
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.41 E-value=2.6e-06 Score=65.19 Aligned_cols=36 Identities=39% Similarity=0.566 Sum_probs=33.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|||+|||+|.|||++|+..++.|.+|+||||.+..
T Consensus 10 e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~ 45 (579)
T PRK06134 10 ECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVF 45 (579)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 718699896789999999999879948999799988
No 148
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.40 E-value=4.5e-07 Score=70.84 Aligned_cols=35 Identities=43% Similarity=0.686 Sum_probs=32.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |||+|||||+|||++|+.|++.|.+|.|+-+..
T Consensus 1 mk-~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gq 35 (425)
T PRK05329 1 MK-FDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQ 35 (425)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98-778999952999999999997799389992784
No 149
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=98.39 E-value=2.2e-06 Score=65.80 Aligned_cols=152 Identities=24% Similarity=0.343 Sum_probs=87.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCC----------------------CC---------EEEE----
Q ss_conf 2999979089999999999789---85999828855557----------------------83---------6888----
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG---FLTALVSPRSFLQD----------------------LR---------TTML---- 46 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g---~~v~iiE~~~~~~~----------------------~r---------~~~l---- 46 (384)
||+|||||.|||-+|+..++.| ++|.||-|=.+.+. .. +-.|
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred --------CHHHHHHHHHCCCHHHHHHCCCCCCCEE------EEECCCCCCCCCCCCCCCHHCCCCCC-CCHHH------
Q ss_conf --------7889999998899478886047123418------99425765545444345022287531-20111------
Q gi|254780842|r 47 --------MGEGIDFLKEINVWDFLQDIAEPVSSFR------LVDITDRLITAPDAIFHSSEIGLDAF-GYNIP------ 105 (384)
Q Consensus 47 --------~~~s~~~L~~lGl~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~------ 105 (384)
.|..+.-|++||+ |.+... ++.... .+-..-.|....+..-+| |...+
T Consensus 81 Ave~~~~~AP~~v~eLe~wG~---------PfSR~~kGDRmaiinaqk--ttiteeDfRDG~IaQR~FGG~~~~~Gg~~a 149 (636)
T TIGR01812 81 AVEYMCKEAPKAVLELERWGV---------PFSRLPKGDRMAIINAQK--TTITEEDFRDGRIAQRPFGGASFDYGGAAA 149 (636)
T ss_pred HHHHHHHHCCHHHHHHHHCCC---------CCCCCCCCCEEEEEECCC--CEECCCCCCCCCEEECCCCCCCCCCCCCHH
T ss_conf 999998515178999973789---------856786776477762454--200201155883534378888865566222
Q ss_pred -H---------CCHHHHHHHHHHHCCCCCCC-CEEEEEECCC-CE--EE----EEECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf -0---------00000001236647983234-2056530268-71--78----98302320--12111235303754320
Q gi|254780842|r 106 -N---------HVLMESFAEKISQDPLIHCF-DALANEIQIG-EE--EV----TILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 106 -r---------~~L~~~L~~~~~~~~~~~~~-~~~v~~i~~~-~~--~v----~v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
| +.|++.|++.+.+.+.|.+| +.-+.++..+ ++ .+ -..+.+|+ .++|+-||-|.|=..++
T Consensus 150 ~RTcyAADkTGh~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~ 229 (636)
T TIGR01812 150 RRTCYAADKTGHALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRV 229 (636)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHH
T ss_conf 13420012113147898999985379942753888877887458986799999998058808999607489830651021
Q ss_pred CC
Q ss_conf 00
Q gi|254780842|r 166 RR 167 (384)
Q Consensus 166 R~ 167 (384)
=+
T Consensus 230 Y~ 231 (636)
T TIGR01812 230 YK 231 (636)
T ss_pred HC
T ss_conf 03
No 150
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.38 E-value=5.2e-06 Score=62.99 Aligned_cols=36 Identities=39% Similarity=0.471 Sum_probs=31.2
Q ss_pred CC--EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 97--00299997908999999999978985999828855
Q gi|254780842|r 1 MN--HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~--~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+ +|||+|||+|+|||++|+.+++ +.+|+|+||...
T Consensus 1 ~~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYP 38 (583)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 97431788999962999999997156-997799978899
No 151
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.37 E-value=2e-06 Score=66.08 Aligned_cols=153 Identities=22% Similarity=0.332 Sum_probs=80.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CCEE--EECH-HH--HHHHHHC----CCHH---------
Q ss_conf 299997908999999999978985999828855557-----8368--8878-89--9999988----9947---------
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-----LRTT--MLMG-EG--IDFLKEI----NVWD--------- 61 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-----~r~~--~l~~-~s--~~~L~~l----Gl~~--------- 61 (384)
||+|||+|+|||++|+.|++. ++|+|+-|.+.... .+++ ++++ .+ ..+-+.| |+-+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 589988759999999737777-8479995777887623654375576617999878888889985477786999999998
Q ss_pred -------HHHHCCCCCCCEEE--EECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCE-EEE
Q ss_conf -------88860471234189--94257655454443450222875312011100000000123664798323420-565
Q gi|254780842|r 62 -------FLQDIAEPVSSFRL--VDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDA-LAN 131 (384)
Q Consensus 62 -------~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~-~v~ 131 (384)
.+...+.+.+.-.- +..+-...++....+...+ . -=+.+.+.|.+++++.+++.+.+. .+.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~----~-----TG~~I~~~L~~~v~~~p~I~v~e~~~a~ 158 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD----A-----TGKEIMTALLKKVRNRPNITVLEGAEAL 158 (518)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEECC----C-----CCHHHHHHHHHHHHCCCCCEEEECCHHH
T ss_conf 689999999973987767888745443101357755788568----7-----6089999999998448995898662236
Q ss_pred EECCCCE----EEEEECCCC--CEEEEEEEEEECCCCCCCCC
Q ss_conf 3026871----789830232--01211123530375432000
Q gi|254780842|r 132 EIQIGEE----EVTILLSTG--QQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 132 ~i~~~~~----~v~v~~~dg--~~i~adlvVgADG~~S~vR~ 167 (384)
++..+++ ++.+...++ .++.++.+|-|.|--+.+=.
T Consensus 159 ~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~ 200 (518)
T COG0029 159 DLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYA 200 (518)
T ss_pred HHHHCCCCEEEEEEEECCCCEEEEEECCEEEEECCCCCCCCC
T ss_conf 660247834767999648981799726848992488763124
No 152
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.37 E-value=9.8e-07 Score=68.36 Aligned_cols=36 Identities=44% Similarity=0.583 Sum_probs=33.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|||+|||+|.|||++|+..++.|.+|+||||.+..
T Consensus 14 d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~ 49 (576)
T PRK12843 14 DTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYV 49 (576)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 828699896889999999999889948999797999
No 153
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.37 E-value=5.4e-07 Score=70.23 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=88.8
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC----CCCCEEEEC--------HHHHHHHHHCC---------
Q ss_conf 97-002999979089999999999789859998288555----578368887--------88999999889---------
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL----QDLRTTMLM--------GEGIDFLKEIN--------- 58 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~----~~~r~~~l~--------~~s~~~L~~lG--------- 58 (384)
|| |+||+|||||||||++|++=++.|.+|+|+|-++.. .+.....|. ..++.-|+.++
T Consensus 173 ~n~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT 252 (1026)
T TIGR01372 173 VNAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTT 252 (1026)
T ss_pred EEEECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 42320478878896799999999647988999706765777556778760178018999999999974189816743540
Q ss_pred -----------CHHHHHHC-CCC---CCCEEEEECCCCCCC------CCCCCCCCHHC----------------------
Q ss_conf -----------94788860-471---234189942576554------54443450222----------------------
Q gi|254780842|r 59 -----------VWDFLQDI-AEP---VSSFRLVDITDRLIT------APDAIFHSSEI---------------------- 95 (384)
Q Consensus 59 -----------l~~~l~~~-~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~---------------------- 95 (384)
+.+...++ ..| ...-++|++.-+... ..-+.|..+|.
T Consensus 253 ~~G~YD~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ERPlVF~nND~PGvMlA~A~~~YlnRygV~pG~ 332 (1026)
T TIGR01372 253 AFGYYDHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGALERPLVFANNDRPGVMLAGAARTYLNRYGVAPGK 332 (1026)
T ss_pred EEEEECCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 55451477478762011366778874853305777253456605764477868831953233367999988875005487
Q ss_pred ----------CCCC------CC----CHH-HHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE---EEEE---C----
Q ss_conf ----------8753------12----011-10000000012366479832342056530268717---8983---0----
Q gi|254780842|r 96 ----------GLDA------FG----YNI-PNHVLMESFAEKISQDPLIHCFDALANEIQIGEEE---VTIL---L---- 144 (384)
Q Consensus 96 ----------~~~~------~g----~~i-~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~---v~v~---~---- 144 (384)
.+.. =| -|| -|.+....+.+++++.+...+.++.|+..+-..|. +.|. +
T Consensus 333 r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p~~~~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~ 412 (1026)
T TIGR01372 333 RIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSPELVAEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDR 412 (1026)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCC
T ss_conf 05898217358999999996489506999617887524799998759859864502212577210104688862440011
Q ss_pred --CCCCEEEEEEEEEECCCCCCC
Q ss_conf --232012111235303754320
Q gi|254780842|r 145 --STGQQIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 145 --~dg~~i~adlvVgADG~~S~v 165 (384)
...+.+.||.|.-+=|=+..|
T Consensus 413 ~~g~~~~~~aD~LlvSGGw~P~v 435 (1026)
T TIGR01372 413 ESGAEERLDADALLVSGGWSPVV 435 (1026)
T ss_pred CCCCCCEEEEEEEEECCCCCCHH
T ss_conf 35785247853898727766212
No 154
>PRK07208 hypothetical protein; Provisional
Probab=98.35 E-value=7.7e-07 Score=69.13 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=34.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97002999979089999999999789859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|++=+|+||||||+||++|..|++.|++|+|+|+++..
T Consensus 1 ~~~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~v 38 (474)
T PRK07208 1 TEKKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEV 38 (474)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99875999897689999999998689975999789987
No 155
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.34 E-value=1.2e-06 Score=67.62 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=27.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 0029999790899999999997898599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||||+|||+||+|.++|..+ .|.+|+|+|+..
T Consensus 1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~ 32 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (453)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCC
T ss_conf 97789989888999999998--299299997899
No 156
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.33 E-value=6.7e-06 Score=62.20 Aligned_cols=148 Identities=22% Similarity=0.286 Sum_probs=73.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CEE--EECH-HHHH-----HHHH-CCCH----------
Q ss_conf 02999979089999999999789859998288555578----368--8878-8999-----9998-8994----------
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL----RTT--MLMG-EGID-----FLKE-INVW---------- 60 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~----r~~--~l~~-~s~~-----~L~~-lGl~---------- 60 (384)
+||+|||+|+|||++|+.++++|.+|+|+++.+..... .++ ++.+ .+.+ .++. -|+-
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~~~~s~~A~gGi~~~~~~~Ds~e~h~~Dt~~~G~gl~d~~lv~~l~~ 81 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSKDSNSYLAQAGIAFPLLEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 87999897699999999999749969999589999514776112064028999999999999995589888999999999
Q ss_pred ------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf ------78886047123418994257655454443450222875312011100000000123664798323420565302
Q gi|254780842|r 61 ------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQ 134 (384)
Q Consensus 61 ------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~ 134 (384)
+.+...+.+..... .....+.+. .+...+ .-| ..+.+.|.+.+++.+.. +.+..+..+.
T Consensus 82 ~a~~~i~~L~~~Gv~f~~~~----~~GGhs~~R-~~~~~~----~tG-----~~i~~~L~~~~~~~~v~-~~~~~~~~l~ 146 (464)
T PRK08401 82 KSTEAYDFLTSLGVEFTGNE----LEGGHSFPR-VFTIKN----ETG-----KHLIPILEKHARELGVN-FIRGFAEELA 146 (464)
T ss_pred HHHHHHHHHHHCCCCCCCCC----CCCCCCCCE-EEEECC----CCH-----HHHHHHHHHHHHHCCCE-EEHHHHHHHE
T ss_conf 99999999997699887788----789743320-267367----658-----99999999999973985-7867657570
Q ss_pred CCCEEEEEECCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 68717898302320121112353037543200
Q gi|254780842|r 135 IGEEEVTILLSTGQQIVGQFLIGSDGRNSSVR 166 (384)
Q Consensus 135 ~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR 166 (384)
..++.+.-.+.+|+.++++-||-|.|--+.+=
T Consensus 147 ~~dg~v~Gv~~~ge~i~~~aVIlATGG~g~l~ 178 (464)
T PRK08401 147 IKNGKAYGVFLNGELLKFDAVIIASGGFSGLY 178 (464)
T ss_pred EECCEEEEEEECCEEEEECEEEECCCCCCCCC
T ss_conf 22898999998888988565998999865340
No 157
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=98.32 E-value=6.2e-06 Score=62.46 Aligned_cols=159 Identities=20% Similarity=0.233 Sum_probs=93.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC-CCC-----CCC-----------------------C-EEEEC-HHH
Q ss_conf 7002999979089999999999789859998288-555-----578-----------------------3-68887-889
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR-SFL-----QDL-----------------------R-TTMLM-GEG 50 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~-~~~-----~~~-----------------------r-~~~l~-~~s 50 (384)
.+|||+|||||=|||-+|+.|++.|+++.+|-|= |.. .+. . .-.|. ..+
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred HHHHHHCCC--HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCC-C---CCCHHHH--CCHHHHHHHHHHHCCC
Q ss_conf 999998899--478886047123418994257655454443450222875-3---1201110--0000000123664798
Q gi|254780842|r 51 IDFLKEINV--WDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLD-A---FGYNIPN--HVLMESFAEKISQDPL 122 (384)
Q Consensus 51 ~~~L~~lGl--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~g~~i~r--~~L~~~L~~~~~~~~~ 122 (384)
++++.+-.. -=+|+..+.|.+... +..+.....--.+.++|.. . -++.-.| +.|++.||+..-+++.
T Consensus 81 iE~Mc~~apeAV~ELEhmG~PFsRT~-----~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t 155 (615)
T TIGR01816 81 IEYMCKEAPEAVLELEHMGMPFSRTE-----EGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADT 155 (615)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98862313577876652777978888-----9833207786975211563323242000142025799998766643187
Q ss_pred CCCCCEEEEEECCC-CEE----EE----EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 32342056530268-717----89----8302320--12111235303754320
Q gi|254780842|r 123 IHCFDALANEIQIG-EEE----VT----ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 123 ~~~~~~~v~~i~~~-~~~----v~----v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
..+.+--+.++-.+ +.. ++ +.+++|+ .++|+=||-|-|=.-++
T Consensus 156 ~FF~E~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~ 209 (615)
T TIGR01816 156 SFFNEFYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRI 209 (615)
T ss_pred CEEEHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHH
T ss_conf 447502211046525789588799889876058888899541078973786405
No 158
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=98.32 E-value=6.4e-06 Score=62.34 Aligned_cols=171 Identities=15% Similarity=0.226 Sum_probs=90.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC--------CCCEEE-------ECHH----------HHHH-
Q ss_conf 700299997908999999999978--98599982885555--------783688-------8788----------9999-
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ--------DLRTTM-------LMGE----------GIDF- 53 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~--------~~r~~~-------l~~~----------s~~~- 53 (384)
++|||+||||||.|.||+..|++. .+++.++||.+... +.+++. .+|. ++.+
T Consensus 3 ~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~eSS~~wNNAgTgHaa~cElNYTpe~~dg~i~i~KA~~In 82 (489)
T pfam06039 3 DKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQESSNPWNNAGTGHSALCELNYTPEGADGSIDISKAVKIN 82 (489)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 61029999962889999999997599874899981475255507886655210002134148876568844279999999
Q ss_pred ------------HHHCCCHHHHHHCCCCCCCEEEEECCCCCC-------------CCCCCCCC--CHHC-----------
Q ss_conf ------------998899478886047123418994257655-------------45444345--0222-----------
Q gi|254780842|r 54 ------------LKEINVWDFLQDIAEPVSSFRLVDITDRLI-------------TAPDAIFH--SSEI----------- 95 (384)
Q Consensus 54 ------------L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~----------- 95 (384)
|-+-|+...-+..-.++.++.+....+... ..+...|. ..+.
T Consensus 83 eqFe~Srqfws~lv~~g~l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk~~~lF~~Me~seD~~~i~~w~PLv~~gR 162 (489)
T pfam06039 83 EQFQISRQFWAYLVKEGVLSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALKQNPLFEGMEYSEDPEKIKEWVPLMMEGR 162 (489)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCCCCCCC
T ss_conf 99999999999998758989857850568815898776988999999998505878677784479899986448003797
Q ss_pred -CCCC-------CCCHHHHCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCEE-EEEECC---CC--CEEEEEEEEEECC
Q ss_conf -8753-------120111000000001236647983-2342056530268717-898302---32--0121112353037
Q gi|254780842|r 96 -GLDA-------FGYNIPNHVLMESFAEKISQDPLI-HCFDALANEIQIGEEE-VTILLS---TG--QQIVGQFLIGSDG 160 (384)
Q Consensus 96 -~~~~-------~g~~i~r~~L~~~L~~~~~~~~~~-~~~~~~v~~i~~~~~~-v~v~~~---dg--~~i~adlvVgADG 160 (384)
..+. .|.-|.-..|-+.|.+.+.+.+++ ..++++|.++....|+ +.|++. +| .+++|++|+..-|
T Consensus 163 ~~~e~vAat~~~~GTdVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAG 242 (489)
T pfam06039 163 DPDEPIAATRIDEGTDVNFGALTRQLFKYLQQKPNVELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAG 242 (489)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCC
T ss_conf 97885579944887401189999999999851898289927885345888999879999865789748998267998887
Q ss_pred CCCC-CCCCCCCC
Q ss_conf 5432-00037873
Q gi|254780842|r 161 RNSS-VRRQMGYG 172 (384)
Q Consensus 161 ~~S~-vR~~l~~~ 172 (384)
-+|. +-+..|++
T Consensus 243 G~sL~LlQksgi~ 255 (489)
T pfam06039 243 GGALPLLQKSGIP 255 (489)
T ss_pred HHHHHHHHHCCCH
T ss_conf 5778999981983
No 159
>PRK11749 putative oxidoreductase; Provisional
Probab=98.31 E-value=9.6e-07 Score=68.40 Aligned_cols=34 Identities=35% Similarity=0.493 Sum_probs=31.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~ 175 (460)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8999896789999999999769847997047878
No 160
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.30 E-value=9.8e-07 Score=68.35 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 145 kVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 178 (472)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERDDRI 178 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8999897789999999998669758997257777
No 161
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.1e-06 Score=67.98 Aligned_cols=145 Identities=18% Similarity=0.280 Sum_probs=81.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-C-----CC-CCEEEECHH-HHHHHHHCC-CHHHHHHCCCCCC
Q ss_conf 9700299997908999999999978985999828855-5-----57-836888788-999999889-9478886047123
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF-L-----QD-LRTTMLMGE-GIDFLKEIN-VWDFLQDIAEPVS 71 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~-~-----~~-~r~~~l~~~-s~~~L~~lG-l~~~l~~~~~~~~ 71 (384)
|+.|||+|||||-||+-+|++-+|.|.+++++-.+.. . ++ .++. ... -++-.+.|| +.....+.+. +
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~--~KG~lvrEIDALGG~Mg~~~D~~~-I- 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGP--GKGHLVREIDALGGLMGKAADKAG-I- 77 (621)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCC--CCCEEEEEEHHCCCHHHHHHHHCC-C-
T ss_conf 987856998998420477776643698079997377744650356445773--553267752412455777666507-8-
Q ss_pred CEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE--EEEECCCCCE
Q ss_conf 41899425765545444345022287531201110000000012366479832342056530268717--8983023201
Q gi|254780842|r 72 SFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEE--VTILLSTGQQ 149 (384)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~--v~v~~~dg~~ 149 (384)
.+++.......... ...-.+.+....+.+.+.+.+.++..++...|.++...++. +-|.+.+|..
T Consensus 78 Q~r~LN~sKGPAVr-------------a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~ 144 (621)
T COG0445 78 QFRMLNSSKGPAVR-------------APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPE 144 (621)
T ss_pred CHHHCCCCCCCHHC-------------CHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCE
T ss_conf 65333677762104-------------50654428999999999985499955247666787133797689999278785
Q ss_pred EEEEEEEEECCCC
Q ss_conf 2111235303754
Q gi|254780842|r 150 IVGQFLIGSDGRN 162 (384)
Q Consensus 150 i~adlvVgADG~~ 162 (384)
+.|+-||-+.|-.
T Consensus 145 ~~a~aVVlTTGTF 157 (621)
T COG0445 145 FHAKAVVLTTGTF 157 (621)
T ss_pred EECCEEEEEECCC
T ss_conf 1068799963344
No 162
>PRK12831 putative oxidoreductase; Provisional
Probab=98.29 E-value=1.1e-06 Score=68.04 Aligned_cols=34 Identities=35% Similarity=0.387 Sum_probs=31.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 142 kVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~ 175 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEP 175 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 8999897689999999999769917998278888
No 163
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.28 E-value=1.1e-06 Score=67.93 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=32.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 139 kVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~ 172 (560)
T PRK12771 139 RVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKL 172 (560)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 8999897789999999999769858996767888
No 164
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.27 E-value=1.3e-06 Score=67.55 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=32.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
-|+|||||||||++|..|++.|++|+|||+.+.+.
T Consensus 195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~G 229 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 79996837899999999997799069981588889
No 165
>PRK13984 putative oxidoreductase; Provisional
Probab=98.26 E-value=1.3e-06 Score=67.36 Aligned_cols=35 Identities=34% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+.
T Consensus 285 KVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~G 319 (604)
T PRK13984 285 KVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPG 319 (604)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 89998986899999999998698689974567789
No 166
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.25 E-value=8.6e-06 Score=61.40 Aligned_cols=171 Identities=11% Similarity=0.183 Sum_probs=89.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC--------CCCEEE-------ECH----------HHHHH-
Q ss_conf 700299997908999999999978--98599982885555--------783688-------878----------89999-
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ--------DLRTTM-------LMG----------EGIDF- 53 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~--------~~r~~~-------l~~----------~s~~~- 53 (384)
+++||++|||||.|.|||.+|++. .+++.|+||-+... +.+++. .+| .++.+
T Consensus 5 ~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~~wNNAGTGHaa~CElNYTp~~~dg~i~i~KA~~In 84 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNERNNAGTGHAALCELNYTVQQADGSIDIKKAKEIN 84 (497)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEHHHHHHHH
T ss_conf 77788998952889999999997699874899981475454407886655221001022048876569824179999999
Q ss_pred ------------HHHCCCHHHHHHCCCCCCCEEEEECCCCCC--------CCCCCCCCCHHC------------------
Q ss_conf ------------998899478886047123418994257655--------454443450222------------------
Q gi|254780842|r 54 ------------LKEINVWDFLQDIAEPVSSFRLVDITDRLI--------TAPDAIFHSSEI------------------ 95 (384)
Q Consensus 54 ------------L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~------------------ 95 (384)
|-+-|..+.-+..-.++.++.+....+... ......|..-++
T Consensus 85 eqFe~S~QfWs~lv~~g~l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal~~~~lF~~MefseD~~~i~~w~PLvm~gR 164 (497)
T PRK13339 85 EQFEISKQFWGHLVKKGTIGNPREFINPLPHISFVRGKNNVKFLKKRFEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGR 164 (497)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCEEECCC
T ss_conf 99999999999998657879857873779824675675888999999998734878777686059899975377522698
Q ss_pred -CCCC-------CCCHHHHCCHHHHHHHHHHHCCCC-CCCCEEEEEECCCCE-EEEEECCC---C--CEEEEEEEEEECC
Q ss_conf -8753-------120111000000001236647983-234205653026871-78983023---2--0121112353037
Q gi|254780842|r 96 -GLDA-------FGYNIPNHVLMESFAEKISQDPLI-HCFDALANEIQIGEE-EVTILLST---G--QQIVGQFLIGSDG 160 (384)
Q Consensus 96 -~~~~-------~g~~i~r~~L~~~L~~~~~~~~~~-~~~~~~v~~i~~~~~-~v~v~~~d---g--~~i~adlvVgADG 160 (384)
..+. .|.-|.-..|-+.|.+.+.+.+++ ..++++|.++....| .++|++.| | .+++|++|+..-|
T Consensus 165 ~~~e~vAAtr~~~GTDVdFGaLTr~l~~~l~~~~~~~v~~~~eV~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAG 244 (497)
T PRK13339 165 EADEIMAASKIDEGTDVNFGALTRKMAKSLEAHPNAQVQYNHEVVDLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAG 244 (497)
T ss_pred CCCCCEEEEECCCCEEECHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCC
T ss_conf 97885558825785340189999999999974898399947886321778999889999965789759999367998887
Q ss_pred CCC-CCCCCCCCC
Q ss_conf 543-200037873
Q gi|254780842|r 161 RNS-SVRRQMGYG 172 (384)
Q Consensus 161 ~~S-~vR~~l~~~ 172 (384)
.+| .+-++.|++
T Consensus 245 G~sL~LLQksgi~ 257 (497)
T PRK13339 245 GGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHCCCC
T ss_conf 3778999984996
No 167
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.25 E-value=1.5e-06 Score=66.99 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=39.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE-----EC----HHHHHHHHHCCC
Q ss_conf 29999790899999999997898599982885555783688-----87----889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM-----LM----GEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~-----l~----~~s~~~L~~lGl 59 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+.-.=.+. |. ..-++.|+++|+
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV 375 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGI 375 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8999897589999999999759906999368888986853587452777899999999986498
No 168
>KOG0029 consensus
Probab=98.25 E-value=1.5e-06 Score=67.01 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=33.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++.+|+|||||+|||++|..|.+.|++|+|+|.++.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7888389989857899999999975982599971477
No 169
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.24 E-value=1.6e-06 Score=66.79 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=32.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
-|+|||||||||++|..|++.|++|+|+|+.+.+.
T Consensus 539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~G 573 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 89998977899999999997799569981589788
No 170
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.23 E-value=2e-05 Score=58.79 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=33.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7002999979089999999999789859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
..+||+|||+| +|+++|+..++.|.+|+|+||.+..
T Consensus 8 ~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~ 43 (515)
T PRK12837 8 EEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKF 43 (515)
T ss_pred CCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 87397998906-9999999999879988999788988
No 171
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.23 E-value=9.6e-07 Score=68.39 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 999979089999999999789859998288555
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
++|||||++||++|+.|+..|++|+|+|+++.+
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~p 33 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKP 33 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 968577768999999997379528998606898
No 172
>PRK12839 hypothetical protein; Provisional
Probab=98.23 E-value=2e-06 Score=66.02 Aligned_cols=38 Identities=42% Similarity=0.583 Sum_probs=34.6
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97-002999979089999999999789859998288555
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|+ .|||+|||+|.|||++|+..++.|.+|+||||.+..
T Consensus 6 ~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~ 44 (574)
T PRK12839 6 MKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVC 44 (574)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 177157899896899999999999889928999689999
No 173
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.21 E-value=1.9e-06 Score=66.17 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||+|||||++|..|++.|++|+|+|+.+.+
T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~ 585 (1032)
T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENA 585 (1032)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7999896889999999999779936998158978
No 174
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.21 E-value=2e-06 Score=66.10 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=31.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+
T Consensus 329 kVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~ 362 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEI 362 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 8999897789999999999769757995257778
No 175
>KOG2853 consensus
Probab=98.21 E-value=9e-05 Score=53.93 Aligned_cols=299 Identities=16% Similarity=0.164 Sum_probs=133.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHH----CCCEEEEEECCCCCCCC------CEEE----E------CHHHHHHHH----HCC
Q ss_conf 0029999790899999999997----89859998288555578------3688----8------788999999----889
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAK----KGFLTALVSPRSFLQDL------RTTM----L------MGEGIDFLK----EIN 58 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~----~g~~v~iiE~~~~~~~~------r~~~----l------~~~s~~~L~----~lG 58 (384)
+.||+|||||..|++.|..|.. .|++|+|+|+.+..... +++. | +-=+-.+|. .+|
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~ 165 (509)
T KOG2853 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLG 165 (509)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 36789988886522658999887643794399996267521001145554443321461001135679999987777635
Q ss_pred CHHHHH--HCCCCCCCEEEEECCCCCC-----------------------CCCCCCCCCHH-----CCCCCCCCHHHHCC
Q ss_conf 947888--6047123418994257655-----------------------45444345022-----28753120111000
Q gi|254780842|r 59 VWDFLQ--DIAEPVSSFRLVDITDRLI-----------------------TAPDAIFHSSE-----IGLDAFGYNIPNHV 108 (384)
Q Consensus 59 l~~~l~--~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~-----~~~~~~g~~i~r~~ 108 (384)
+.+.-. -...|..........+... .......+.+. .+.+.-|| +.-..
T Consensus 166 ~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGw-fdpw~ 244 (509)
T KOG2853 166 ILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGW-FDPWA 244 (509)
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCC-CCHHH
T ss_conf 36677887004777048970502489987757887763530003487887632873133562332024453566-57799
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCC--------------------EEEEEECCCC--CEEEEEEEEEECCCCC-CC
Q ss_conf 00000123664798323420565302687--------------------1789830232--0121112353037543-20
Q gi|254780842|r 109 LMESFAEKISQDPLIHCFDALANEIQIGE--------------------EEVTILLSTG--QQIVGQFLIGSDGRNS-SV 165 (384)
Q Consensus 109 L~~~L~~~~~~~~~~~~~~~~v~~i~~~~--------------------~~v~v~~~dg--~~i~adlvVgADG~~S-~v 165 (384)
|+..+.+++...+.. +...+|+..+... .++.|...|+ .+++++++|.|-|+.| .|
T Consensus 245 LLs~~rrk~~~lGv~-f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~Qv 323 (509)
T KOG2853 245 LLSGIRRKAITLGVQ-FVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQV 323 (509)
T ss_pred HHHHHHHHHHHHCCE-EECCEEEEEEEECCCCEEEECCCCHHHHHHCCCCEEEEECCCHHCCCEEEEEEEECCCCCHHHH
T ss_conf 999888876531306-7423588789703110465325632445540222037856740027324788985267317889
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCC-CCCEEEEEECCCCCCCCCCCCC----------CCCE-EEEE-EECHHHH-HHH
Q ss_conf 00378733222243047876411478-8611788722787542100012----------3201-1267-5075673-245
Q gi|254780842|r 166 RRQMGYGENKWSYPQKALVLNFQHSM-PHNGRCVEFHKSLGTITQIPLR----------ENFS-SLVW-IMESQEA-DFY 231 (384)
Q Consensus 166 R~~l~~~~~~~~y~~~~l~~~~~~~~-~~~~~a~~~f~~~G~~a~lP~~----------~~~~-~ivw-~~~~~~~-~~~ 231 (384)
.+.+||.... ++.. +..+. |..---|.+|.+++|-.-.|+. ++.+ +++. ..|.++. .+.
T Consensus 324 ArlAgIG~g~------g~L~-vplPiepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~ 396 (509)
T KOG2853 324 ARLAGIGKGP------GLLA-VPLPIEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDH 396 (509)
T ss_pred HHHHCCCCCC------CEEE-ECCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCEEEECCCCCCEECCCCCCCCCCCCC
T ss_conf 9985458998------2356-40567765216999968999887886368788527975488775331668743358873
Q ss_pred HH--HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCEECCC-----CCCCCCHHHHHHHHHHHHHH
Q ss_conf 53--223467887763067546762111022320223343045653794210110-----01138445653211212389
Q gi|254780842|r 232 YK--LPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEA-----AHALPPICGQGLNLSMRDVI 304 (384)
Q Consensus 232 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~liGDA-----AH~~~P~~GqG~n~ai~Da~ 304 (384)
.+ .+...|...+-.++...+..++...-...|.=..-+ +.|-.++| ||.- -|.+.-|.|.|.-+++.=+.
T Consensus 397 ~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~-NtfD~ngV--iG~HP~y~Nly~atGFsghGvqqs~avgR 473 (509)
T KOG2853 397 SNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDH-NTFDDNGV--IGEHPLYTNLYMATGFSGHGVQQSPAVGR 473 (509)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCC-CCCCCCCC--CCCCCCEEEEEEEECCCCCCHHCCHHHHH
T ss_conf 2344586788764237877426542213320100342213-55455774--45785624246550546644100657789
Q ss_pred HHHHHHHCC
Q ss_conf 999998525
Q gi|254780842|r 305 ILLNLFQSE 313 (384)
Q Consensus 305 ~L~~~l~~~ 313 (384)
+.++.+-..
T Consensus 474 AiaElIldG 482 (509)
T KOG2853 474 AIAELILDG 482 (509)
T ss_pred HHHHHHHCC
T ss_conf 999998647
No 176
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=2.4e-06 Score=65.51 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=32.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+
T Consensus 441 KVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~ 474 (760)
T PRK12778 441 KVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEI 474 (760)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 8999897789999999999779906998058888
No 177
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.18 E-value=2.4e-06 Score=65.43 Aligned_cols=51 Identities=33% Similarity=0.515 Sum_probs=39.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHC
Q ss_conf 970029999790899999999997898599982885555783688878899999988
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEI 57 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~l 57 (384)
|| |||+|||||+||+++|+.|.++|.++.|+.+... +..++..++++|.++
T Consensus 1 M~-fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs-----ALhfsSGslDlLg~l 51 (421)
T COG3075 1 MN-FDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS-----ALHFSSGSLDLLGRL 51 (421)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH-----HHHCCCCCHHHHHCC
T ss_conf 96-3079976728888999999965880799857701-----310256517776209
No 178
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.18 E-value=2.4e-06 Score=65.46 Aligned_cols=49 Identities=35% Similarity=0.542 Sum_probs=38.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHC
Q ss_conf 029999790899999999997898599982885555783688878899999988
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEI 57 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~l 57 (384)
|||+|||||+|||++|+.|++.|.+|.|+-+... +..++..++++|..+
T Consensus 1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gqs-----aL~fsSGsiDlLg~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS-----ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-----CCCCCCCCHHHHCCC
T ss_conf 9789999619999999999977995899937833-----021235357650359
No 179
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=98.16 E-value=1.3e-05 Score=60.06 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=84.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCC---CEEEECHHHHHHHHHCCCHH-HHHHC-------CCCCCC
Q ss_conf 2999979089999999999789-859998288555578---36888788999999889947-88860-------471234
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSFLQDL---RTTMLMGEGIDFLKEINVWD-FLQDI-------AEPVSS 72 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~~~~~---r~~~l~~~s~~~L~~lGl~~-~l~~~-------~~~~~~ 72 (384)
||+|||+|-||+++|+...++| .+|+||||.+..--. -+..++-+.-.+=+..|+.| .-+-. +.-...
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887
Q ss_pred EEEEE--------CCCCCCCCCCCCCCCHHCCCCCCCCHHHH-----------CCHHHHHHHHHHHCC------CCCCCC
Q ss_conf 18994--------25765545444345022287531201110-----------000000012366479------832342
Q gi|254780842|r 73 FRLVD--------ITDRLITAPDAIFHSSEIGLDAFGYNIPN-----------HVLMESFAEKISQDP------LIHCFD 127 (384)
Q Consensus 73 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~i~r-----------~~L~~~L~~~~~~~~------~~~~~~ 127 (384)
-.+.+ ..+.... ....+..... ...-|+.++| ..+.+.|++.+++.+ +....+
T Consensus 81 ~~L~~~la~~s~~a~~wl~d-~~~~~~l~~~-~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n 158 (487)
T TIGR01813 81 PELVRTLAEESADAVDWLQD-CGVGFRLDDL-IQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLN 158 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCEECCHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCC
T ss_conf 89999999878899887764-2210001114-432787646430347887678401177788774337743211221006
Q ss_pred EEEEEECCCCEE----EEEE----CCCC---C---EEEEEEEEEECCCCC-C---CCCCCCC
Q ss_conf 056530268717----8983----0232---0---121112353037543-2---0003787
Q gi|254780842|r 128 ALANEIQIGEEE----VTIL----LSTG---Q---QIVGQFLIGSDGRNS-S---VRRQMGY 171 (384)
Q Consensus 128 ~~v~~i~~~~~~----v~v~----~~dg---~---~i~adlvVgADG~~S-~---vR~~l~~ 171 (384)
++|+++..++++ +.|. |.++ + .+.++=||.|.|=.| . +|+.+..
T Consensus 159 ~~v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGGFgy~N~~~~~~y~P 220 (487)
T TIGR01813 159 SKVEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGGFGYSNKELIKKYDP 220 (487)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHHHCH
T ss_conf 72799998697118999962122588777787326755060689757613333899986180
No 180
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.16 E-value=2.7e-06 Score=65.11 Aligned_cols=36 Identities=39% Similarity=0.515 Sum_probs=33.7
Q ss_pred EEEEEEECCCHHHHHHHH-HHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999-999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAI-GAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~-~L~~~g~~v~iiE~~~~~ 38 (384)
.||.+|||||++|..+|. .|+++|-+|+|+||+...
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hi 37 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHI 37 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9517998663677999999999709988999730665
No 181
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.15 E-value=2.9e-05 Score=57.54 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=74.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC---C---CEE--EECHH-HHHH-----HHH-CCCH-------
Q ss_conf 00299997908999999999978985999828855557---8---368--88788-9999-----998-8994-------
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD---L---RTT--MLMGE-GIDF-----LKE-INVW------- 60 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~---~---r~~--~l~~~-s~~~-----L~~-lGl~------- 60 (384)
.+||+|||+|+|||++|+.++.+ .|+|+++.+.... . +++ ++.+. +.+. ++. -|+-
T Consensus 9 ~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~gl~d~~~v~~ 86 (507)
T PRK07512 9 TGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDEAVARR 86 (507)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 69989999669999999983307--8399990588999626675245146069999999999999996478788999999
Q ss_pred ---------HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCH---HHHCCHHHHHHHHHHHCCCCCCCC-
Q ss_conf ---------7888604712341899425765545444345022287531201---110000000012366479832342-
Q gi|254780842|r 61 ---------DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN---IPNHVLMESFAEKISQDPLIHCFD- 127 (384)
Q Consensus 61 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---i~r~~L~~~L~~~~~~~~~~~~~~- 127 (384)
+.+...+.|...- ..+...... ....+.+..-+. ..-..+.+.|++++.+.+.+.+++
T Consensus 87 l~~~a~~~i~~L~~~Gv~F~r~----~~G~~~~~~-----~ggHs~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I~i~~~ 157 (507)
T PRK07512 87 IAAEAPAAIEDLLRLGVPFDRD----ADGRLALGL-----EAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEG 157 (507)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC----CCCCCCCCC-----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998999999999809936447----887511456-----6556787278745887436999999999982799449998
Q ss_pred EEEEEECCCCEEEE-E-ECCCCC--EEEEEEEEEECCCCCCCC
Q ss_conf 05653026871789-8-302320--121112353037543200
Q gi|254780842|r 128 ALANEIQIGEEEVT-I-LLSTGQ--QIVGQFLIGSDGRNSSVR 166 (384)
Q Consensus 128 ~~v~~i~~~~~~v~-v-~~~dg~--~i~adlvVgADG~~S~vR 166 (384)
..+.++-.+++.+. + ...+|+ .++++-||-|.|--+.+-
T Consensus 158 ~~~~~Ll~~~g~v~Gv~~~~~g~~~~i~A~aVILATGG~g~ly 200 (507)
T PRK07512 158 AEARRLLVEDGAVAGVLLATAGGPVVLPARAVVLATGGIGGLY 200 (507)
T ss_pred EEEEEEEECCCEEEEEEEECCCCEEEEEECEEEECCCCCCCCC
T ss_conf 9988877538807899997389889998286998889775667
No 182
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.15 E-value=5.6e-05 Score=55.43 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=64.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.|+|||||..|+=+|-.|++.|.+|+|+|+.+..-. -.+.+....
T Consensus 139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~---~~~d~~~~~-------------------------------- 183 (427)
T TIGR03385 139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILN---KLFDEEMNQ-------------------------------- 183 (427)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC---CCCCHHHHH--------------------------------
T ss_conf 899999639999999999976998999984683365---548999999--------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
.+.+.+.+.+...+.+..+.+++.+ +..+.+.+|+++.+|+||.|-|+..+
T Consensus 184 ---------------------------~~~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~l~~g~~i~~D~vi~a~G~~Pn 234 (427)
T TIGR03385 184 ---------------------------IVEEELEKHEIELRLNEEVDSIIGE--ERVGVITSGGVYQADMVILAIGVKPN 234 (427)
T ss_pred ---------------------------HHHHHHHHCCCEEEECCEEEEEECC--CCEEEEECCCEEECCEEEECCCCCCC
T ss_conf ---------------------------9999999759799979889999878--87899946999972899988774676
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+.-
T Consensus 235 ~~~ 237 (427)
T TIGR03385 235 SEL 237 (427)
T ss_pred CCC
T ss_conf 424
No 183
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.14 E-value=1.8e-05 Score=59.06 Aligned_cols=182 Identities=20% Similarity=0.234 Sum_probs=100.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHH-CCC-EEEEEECCC-----CCCC---CCEEEECHHHHHHHH-HCCCHHHHHH-----
Q ss_conf 70029999790899999999997-898-599982885-----5557---836888788999999-8899478886-----
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAK-KGF-LTALVSPRS-----FLQD---LRTTMLMGEGIDFLK-EINVWDFLQD----- 65 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~-~g~-~v~iiE~~~-----~~~~---~r~~~l~~~s~~~L~-~lGl~~~l~~----- 65 (384)
++|||+|||||==||++|..||+ +|| +|.|+||.= .-++ .|.=.|-|.+..+-+ .+-+|+-|..
T Consensus 29 ~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl~p~s~~~Ye~a~kLweGLs~dLNYN 108 (407)
T TIGR01373 29 PEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNYN 108 (407)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCHHHHCCHH
T ss_conf 85467888688606899999886469406899850621688664342146541026452237888988861200120200
Q ss_pred --------------------CCCCCCCEEEEECCCCCCC--------CCCCCCCCHHCCCCCCCCHHH------HCCHHH
Q ss_conf --------------------0471234189942576554--------544434502228753120111------000000
Q gi|254780842|r 66 --------------------IAEPVSSFRLVDITDRLIT--------APDAIFHSSEIGLDAFGYNIP------NHVLME 111 (384)
Q Consensus 66 --------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~------r~~L~~ 111 (384)
....++.+++.-+ |.+.. .|...++ .+..+|-+|=.+. |+|-.-
T Consensus 109 vM~SqRG~~nL~H~~~~~~~~~R~v~A~r~~Gv-DaELl~~~~v~~~~P~ld~s-~daRfPv~Gg~~QrRgGtaRHDAVA 186 (407)
T TIGR01373 109 VMFSQRGVLNLAHSTADMDDYARRVNAMRLNGV-DAELLSPEQVKRLIPILDFS-KDARFPVVGGLLQRRGGTARHDAVA 186 (407)
T ss_pred HHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCC-CHHHCCHHHHHHHCCCCCCC-CCCCCCCCCCCHHCCCCCEEEHHHH
T ss_conf 112133234321888787643141001110364-63206878999618811288-8888630054001378710210122
Q ss_pred -HHHHHHHHCCCCCCCCEEEEEECCC-CEEEE-EECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -0012366479832342056530268-71789-83023201211123530375432000378733222243047876
Q gi|254780842|r 112 -SFAEKISQDPLIHCFDALANEIQIG-EEEVT-ILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVL 185 (384)
Q Consensus 112 -~L~~~~~~~~~~~~~~~~v~~i~~~-~~~v~-v~~~dg~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~ 185 (384)
-..+.+...++..+-+++|+++... ++.+. |+++-|..=-.++=|.+=|-.|.+.+.+|++..-.+|.-.|+|.
T Consensus 187 WGYARgAd~~GVdiIqncEvTg~~~~~~grv~GV~T~RG~IgA~kvgva~AG~ss~~a~~AG~rlPieSh~LQA~Vs 263 (407)
T TIGR01373 187 WGYARGADARGVDIIQNCEVTGFIRRENGRVIGVETTRGFIGAKKVGVAVAGNSSVVAELAGFRLPIESHVLQALVS 263 (407)
T ss_pred HHHHHHHHHCCCEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHHEEEC
T ss_conf 21464230058403222320231650687588654487410103788887177589897637426621101011130
No 184
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.14 E-value=3.7e-06 Score=64.13 Aligned_cols=36 Identities=42% Similarity=0.547 Sum_probs=33.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+ |||+|||+|.|||++|+..++.|.+|+|+||.+.
T Consensus 1 ~e-~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~ 36 (549)
T PRK12834 1 MD-ADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 36 (549)
T ss_pred CC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99-9989989678999999999987992799966888
No 185
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=98.14 E-value=1.7e-06 Score=66.58 Aligned_cols=168 Identities=19% Similarity=0.244 Sum_probs=85.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC---------CCCEEE-----ECHHHHHHHHHCCCHHHHHHCCCC
Q ss_conf 029999790899999999997898599982885555---------783688-----878899999988994788860471
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ---------DLRTTM-----LMGEGIDFLKEINVWDFLQDIAEP 69 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~---------~~r~~~-----l~~~s~~~L~~lGl~~~l~~~~~~ 69 (384)
.||+|||||+|||++|+.-++.|-.|+|+|..|... +.|... +.+.+... |+ +|.+|.+.---
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNarHgRN~R~~hd~p~d~~~D~Ypa-EE--f~~dL~~vtgg 78 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNARHGRNLRVAHDIPLDFLRDAYPA-EE--FRRDLLKVTGG 78 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCH-HH--HHHHHHHHCCC
T ss_conf 2378876425889999998637967984024785325786533345111015788864578737-89--99875431278
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCCHHCCCCCC--CC-HHHH---------CCHHHHHHHHHHHCCCCCCCCEEEEEECCC
Q ss_conf 234189942-5765545444345022287531--20-1110---------000000012366479832342056530268
Q gi|254780842|r 70 VSSFRLVDI-TDRLITAPDAIFHSSEIGLDAF--GY-NIPN---------HVLMESFAEKISQDPLIHCFDALANEIQIG 136 (384)
Q Consensus 70 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--g~-~i~r---------~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~ 136 (384)
...-+.... -.+..+.....+. .-.+.++. |. -++| +.|.++||..+++.++.+.++..|..+..+
T Consensus 79 ~t~~~l~~L~i~r~s~~~~w~~~-~GVhl~P~~aG~lpysRrtaF~~GGGkAl~NAly~sAerLGv~Iry~~~V~ri~~~ 157 (467)
T TIGR02485 79 RTDERLARLLIERASSILRWLIA-HGVHLQPAAAGVLPYSRRTAFLLGGGKALVNALYASAERLGVEIRYDAEVERIERE 157 (467)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHH-CCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 74115789988720023689996-79433663256576011111235761899999999885557254147730002645
Q ss_pred CEE-EE--EE--CCCCCEEEEEEEEEECCC-C---CCCCCCCCCCCCC
Q ss_conf 717-89--83--023201211123530375-4---3200037873322
Q gi|254780842|r 137 EEE-VT--IL--LSTGQQIVGQFLIGSDGR-N---SSVRRQMGYGENK 175 (384)
Q Consensus 137 ~~~-v~--v~--~~dg~~i~adlvVgADG~-~---S~vR~~l~~~~~~ 175 (384)
.++ .+ +. ..+++.|+++=+|-|-|= . .++|+..|-..+.
T Consensus 158 ~~g~~~i~~~~v~~~~~rI~t~a~VlaaGG~ganr~WLr~~~G~~a~g 205 (467)
T TIGR02485 158 EDGRAFIAARLVAAADERIATKAVVLAAGGLGANREWLRKAFGSRAEG 205 (467)
T ss_pred CCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCC
T ss_conf 678620121466226881224688886178888979999836887577
No 186
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=98.13 E-value=1.2e-05 Score=60.24 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=77.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
=+|||||+=||=+|.+|.+.|++|.|+|-.|.. +++ .|...+
T Consensus 150 GaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~L---------------M~~-----QLD~~a------------------ 191 (813)
T TIGR02374 150 GAVIGGGLLGLEAARALKNLGMDVSVIELAPFL---------------MAK-----QLDQTA------------------ 191 (813)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHH---------------HHH-----HHHHHH------------------
T ss_conf 558867415889999998779706446764898---------------999-----999999------------------
Q ss_pred CCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCC--CEEEEEECCCC---EEEEEECCCCCEEEEEEEEEECC
Q ss_conf 44434502228753120111000000001236647983234--20565302687---17898302320121112353037
Q gi|254780842|r 86 PDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCF--DALANEIQIGE---EEVTILLSTGQQIVGQFLIGSDG 160 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~--~~~v~~i~~~~---~~v~v~~~dg~~i~adlvVgADG 160 (384)
| +.|.+++.+.+...+. ++.-.++..+. ..-+++|+||+.+++|+||-|-|
T Consensus 192 ---------------G---------~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~G 247 (813)
T TIGR02374 192 ---------------G---------RLLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAG 247 (813)
T ss_pred ---------------H---------HHHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCCEEEECEEEEECC
T ss_conf ---------------9---------9999999857957986176110576415640123122423897887037999515
Q ss_pred CCCC--CCCCCCCCCCCCCCCEEEEEEEE--CCCCCC
Q ss_conf 5432--00037873322224304787641--147886
Q gi|254780842|r 161 RNSS--VRRQMGYGENKWSYPQKALVLNF--QHSMPH 193 (384)
Q Consensus 161 ~~S~--vR~~l~~~~~~~~y~~~~l~~~~--~~~~~~ 193 (384)
++.+ +....|++.-. +..++.+- +++.|+
T Consensus 248 irP~~~LA~~aGl~v~~----RrGiivnd~~qTs~P~ 280 (813)
T TIGR02374 248 IRPRDELAAEAGLKVND----RRGIIVNDSMQTSDPD 280 (813)
T ss_pred CCCCHHHHHHCCCCCCC----CCCEEECCCCCCCCCC
T ss_conf 66636899865973547----6767872622378887
No 187
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.13 E-value=4.1e-05 Score=56.42 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 0012366479832342056530268717898302320121112353037543200
Q gi|254780842|r 112 SFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVR 166 (384)
Q Consensus 112 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR 166 (384)
.+.+.+.+.+...+++..+.++..++....+.++ +.++++|+||.|-|...++-
T Consensus 196 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~Pn~~ 249 (443)
T PRK09564 196 VMEEELREKGVELHTSEFVKSLIGEDKVEGVVTN-KGEYEADVVILSTGIKPNTE 249 (443)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEC-CCEEEEEEEEECCCCCCCHH
T ss_conf 9999999779799989989999926989999977-98897238999558853507
No 188
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=3.7e-06 Score=64.09 Aligned_cols=35 Identities=31% Similarity=0.144 Sum_probs=32.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 02999979089999999999789859998288555
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.+|+||||||+|+++|+.+++.|++|+|+|+.+..
T Consensus 18 kkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~ 52 (350)
T PRK12770 18 KKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEP 52 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 98999995588999999999789985999536969
No 189
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.12 E-value=4.1e-05 Score=56.45 Aligned_cols=170 Identities=15% Similarity=0.226 Sum_probs=90.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC--------CCCEEE-------ECH----------HHHHH--
Q ss_conf 00299997908999999999978--98599982885555--------783688-------878----------89999--
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ--------DLRTTM-------LMG----------EGIDF-- 53 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~--------~~r~~~-------l~~----------~s~~~-- 53 (384)
++||++|||||-+.|++.+|... .+++.++||-+... +.+++. .+| .++.+
T Consensus 9 ~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~CELNYTp~~~dG~i~i~KA~~Ine 88 (499)
T PRK05257 9 KTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEQADGSIDISKAVKINE 88 (499)
T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 66689999528899999999970998748999924600545076655454402130221488776798370899999999
Q ss_pred -----------HHHCCCHHHHHHCCCCCCCEEEEECCCCCC--------CCCCCCCCCHHCC------------------
Q ss_conf -----------998899478886047123418994257655--------4544434502228------------------
Q gi|254780842|r 54 -----------LKEINVWDFLQDIAEPVSSFRLVDITDRLI--------TAPDAIFHSSEIG------------------ 96 (384)
Q Consensus 54 -----------L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------------ 96 (384)
|-+-|....-...-.++.++.++...+... ......|..-++.
T Consensus 89 ~Fe~SrQfWs~lv~~g~l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al~~~~lF~~Mefsed~~~i~~W~PLvm~gR~ 168 (499)
T PRK05257 89 QFQISRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKASPLFAGMEFSEDPAQIKEWAPLMMEGRD 168 (499)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHCCHHCCCCC
T ss_conf 99999999999997588789688535688347888858789999999987438687885754799999863543006999
Q ss_pred -CCC-------CCCHHHHCCHHHHHHHHHHHCCC-CCCCCEEEEEECCCCEE-EEEECCC---C--CEEEEEEE-EEECC
Q ss_conf -753-------12011100000000123664798-32342056530268717-8983023---2--01211123-53037
Q gi|254780842|r 97 -LDA-------FGYNIPNHVLMESFAEKISQDPL-IHCFDALANEIQIGEEE-VTILLST---G--QQIVGQFL-IGSDG 160 (384)
Q Consensus 97 -~~~-------~g~~i~r~~L~~~L~~~~~~~~~-~~~~~~~v~~i~~~~~~-v~v~~~d---g--~~i~adlv-VgADG 160 (384)
.+. .|.-|.-..|-+.|.+.+.+.++ ...++++|.++....++ +.|+..| | .+++|++| |||-|
T Consensus 169 ~~e~vAaTr~~~GTDVnFGaLT~~l~~~l~~~~~~~l~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG 248 (499)
T PRK05257 169 PSEKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGG 248 (499)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCC
T ss_conf 89850058347875456899999999999758983899368875608889998799999878897279982569988881
Q ss_pred CCCCCCCCCCCC
Q ss_conf 543200037873
Q gi|254780842|r 161 RNSSVRRQMGYG 172 (384)
Q Consensus 161 ~~S~vR~~l~~~ 172 (384)
.-=.+-+..||+
T Consensus 249 ~aL~LLQksgI~ 260 (499)
T PRK05257 249 GALPLLQKSGIP 260 (499)
T ss_pred HHHHHHHHCCCC
T ss_conf 457889883992
No 190
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.11 E-value=3.5e-05 Score=56.94 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 00123664798323420565302687178983023201211123530375432000
Q gi|254780842|r 112 SFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 112 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~ 167 (384)
.+.+.+.+.+...+.+.++.+++..++++.+++.||+++++|.|+.|-|+..++..
T Consensus 224 ~~~~~l~~~gv~i~~~~~~~~v~~~~~~~~v~~~~g~~i~~d~vl~a~Gr~Pn~~~ 279 (467)
T PRK07845 224 VLEEVFARRGMTLLKRSRAESVTRTGDGVLVTLTDGRTVEGSHALMAVGSVPNTAG 279 (467)
T ss_pred HHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCC
T ss_conf 99999997690997288799999809826999889979987799995450255255
No 191
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.11 E-value=1.1e-05 Score=60.56 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=46.2
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCC-------------CCC--EEEEC-HHHHHHHHHCCCHHHHH
Q ss_conf 999979089999999999789--8599982885555-------------783--68887-88999999889947888
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQ-------------DLR--TTMLM-GEGIDFLKEINVWDFLQ 64 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~-------------~~r--~~~l~-~~s~~~L~~lGl~~~l~ 64 (384)
|+|||||++||++|..|++.+ ++++|+|+.+... |.+ +.... +..++.+++||+.+.+.
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCEEEEECHHHEECCHHHHHHHHHHHCCHHHHC
T ss_conf 99987828889999999985899867998348877865899831888875050440114088999999848177640
No 192
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=1.5e-05 Score=59.67 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=30.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+||||||+|+++|+.+++.|.+|+|+|+...
T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~ 34 (458)
T PRK06912 2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEADL 34 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 499990088999999999978595999958997
No 193
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.10 E-value=4.8e-06 Score=63.26 Aligned_cols=36 Identities=42% Similarity=0.707 Sum_probs=33.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|||+|||+|.|||++|+..+..|.+|+|+||.+..
T Consensus 5 e~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~ 40 (560)
T PRK07843 5 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 40 (560)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 657899896789999999999889988999699997
No 194
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=7.1e-05 Score=54.67 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC---CEEEEEEEEEECCCCCCCCC
Q ss_conf 0001236647983234205653026871789830232---01211123530375432000
Q gi|254780842|r 111 ESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG---QQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 111 ~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg---~~i~adlvVgADG~~S~vR~ 167 (384)
+.+.+.+++.+...+.+..+.+++.+++++.++++++ +++++|.|+.|-|+..++..
T Consensus 217 ~~l~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pn~~~ 276 (462)
T PRK06416 217 KLAERALKKRGIKIVTGAMAKKVEQTDDGVTVTLEAGGEEETIEADYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHHHHCCCCEECCCEEEEEEECCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCC
T ss_conf 899999996498514484699999729989999953985899963299999664016443
No 195
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.09 E-value=0.00031 Score=50.02 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=104.2
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCC-CCCCCCCCCCCCCCEEE
Q ss_conf 11000000001236647983234205653026871789830232012111235303754320-00378733222243047
Q gi|254780842|r 104 IPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSV-RRQMGYGENKWSYPQKA 182 (384)
Q Consensus 104 i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~v-R~~l~~~~~~~~y~~~~ 182 (384)
+.-..+.+.|.+.++ .+...+.+..|..++.+.+++++.+.+|+++++|.||.|-|..|.- -..++++..... +|
T Consensus 132 v~p~~~~~al~~~a~-~g~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~s~~l~~~~~lpl~p~r-Gq-- 207 (381)
T TIGR03197 132 LSPPQLCRALLAHAG-IRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTAHLPLRPVR-GQ-- 207 (381)
T ss_pred ECHHHHHHHHHHHHH-HCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCCHHHHHHHHCCCCCCEE-EE--
T ss_conf 478999999999997-29789936258999995998999989998897355898554203555665135677335-58--
Q ss_pred EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHH-HHHHHHHHHHHHHHHHCCCCCC--C--CCCCC
Q ss_conf 87641147886117887227875421000123201126750756732-4553223467887763067546--7--62111
Q gi|254780842|r 183 LVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEAD-FYYKLPVNEIARRLEQYLYPVI--G--KIEVV 257 (384)
Q Consensus 183 l~~~~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~--~--~~~~~ 257 (384)
+..+......... ...+...|+ +.|..++...+--+......+ ........+..+.+.+.++..- . +.+..
T Consensus 208 -~~~~~~~~~~~~~-~~~~~~~~y--~~p~~~g~~~iGat~e~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 283 (381)
T TIGR03197 208 -VSHLPATEALSAL-KTVLCYDGY--LTPANNGEHCIGASYDRNDDDLALREADHAENLERLAECLPALAWASEVDISAL 283 (381)
T ss_pred -EEEECCCCCCCCC-CEEEECCCE--EEECCCCEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCHHH
T ss_conf -9875477766788-469736988--955389869961133136889998978999999999985720001135772333
Q ss_pred EEEEEECCCCCCCHHHHHCCCCEEC-----------------CCCCCC------CC-------HHHHHHHHHHHHHHHHH
Q ss_conf 0223202233430456537942101-----------------100113------84-------45653211212389999
Q gi|254780842|r 258 TDVQIFQLSGMISHCFGKKRVVLVG-----------------EAAHAL------PP-------ICGQGLNLSMRDVIILL 307 (384)
Q Consensus 258 ~~~~~~pl~~~~~~~~~~~rv~liG-----------------DAAH~~------~P-------~~GqG~n~ai~Da~~L~ 307 (384)
..+..+ +....++.=+|| |..+.+ +| +.|.|+.+|=--+..|+
T Consensus 284 ~~w~G~-------Rp~tpD~lPiiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~a~G~g~~G~~~ap~~g~~lA 356 (381)
T TIGR03197 284 QGRVGV-------RCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILA 356 (381)
T ss_pred HCEEEE-------CCCCCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 103530-------3558977877076664677765433102321134556678889989998784139999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 998525799-079999999986
Q gi|254780842|r 308 NLFQSEHMS-FRAIGNRYHAMR 328 (384)
Q Consensus 308 ~~l~~~~~~-~~~~l~~Y~~~R 328 (384)
+.+...... ..++++.+.=.|
T Consensus 357 ~~I~g~~~~i~~~~l~~~~P~R 378 (381)
T TIGR03197 357 AQICGEPLPLERDLLHALHPAR 378 (381)
T ss_pred HHHCCCCCCCCHHHHHHCCHHH
T ss_conf 9974999999989985079200
No 196
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.09 E-value=3.4e-06 Score=64.42 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=41.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE---------EECHHHHHHHHHCCC
Q ss_conf 2999979089999999999789859998288555578368---------887889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTT---------MLMGEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~---------~l~~~s~~~L~~lGl 59 (384)
-|+|||||||||++|=.|+|+|++|.||||++..--.=+. ++...=.++|+.+|+
T Consensus 145 rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi 208 (480)
T TIGR01318 145 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGI 208 (480)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 7899778860257999875178559997477030760136888511027899999999975892
No 197
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.08 E-value=7.7e-05 Score=54.44 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=32.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCC
Q ss_conf 97002999979089999999999789--8599982885555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQ 39 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~ 39 (384)
|++ |+|||||+||+++|..|+|.+ .+|+|+|+.+...
T Consensus 1 M~k--iVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~ 39 (438)
T PRK13512 1 MPK--IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 980--999898499999999999439199999996899888
No 198
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=98.08 E-value=4.4e-06 Score=63.53 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=31.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
++-|+|||||||||++|.-|||.|++|+|||.=+.+
T Consensus 142 ~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKP 177 (462)
T TIGR01316 142 KKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKP 177 (462)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 877999846821468899997479869999714899
No 199
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.08 E-value=7.5e-05 Score=54.51 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=86.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC------CCEEE--EC-HH-HHH--HHHHC----CCHH----
Q ss_conf 700299997908999999999978985999828855557------83688--87-88-999--99988----9947----
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD------LRTTM--LM-GE-GID--FLKEI----NVWD---- 61 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~------~r~~~--l~-~~-s~~--~L~~l----Gl~~---- 61 (384)
+++||+|||+|.|||++|+.|..++.+|.|+-|+....+ .++|+ |. .. |++ +.+.| |+-|
T Consensus 1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~aV 80 (546)
T TIGR00551 1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEEAV 80 (546)
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 96359997520899999985332686378975875555675200011266303875585687789999844678868899
Q ss_pred ------------HHHHCCCCCCCEE------EEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCC
Q ss_conf ------------8886047123418------9942576554544434502228753120111000000001236647983
Q gi|254780842|r 62 ------------FLQDIAEPVSSFR------LVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLI 123 (384)
Q Consensus 62 ------------~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~ 123 (384)
.|-..|.+.+.-. .+..+....++....|++. -+.-| +.+...|.+++...+++
T Consensus 81 ~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS~~RI~HA~---GDaTG-----r~~~~~L~~~a~~~p~~ 152 (546)
T TIGR00551 81 EFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHSYRRILHAA---GDATG-----REVISTLLKKARSEPNV 152 (546)
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEC---CCCCH-----HHHHHHHHHHHHCCCCE
T ss_conf 99985368999999866922026779887443100133566777427735---76324-----89999999997437762
Q ss_pred CCCCE-EEEEECCC-------CEE---EEEECCCC---CEEEEEEEEEECCCCCCCCCC
Q ss_conf 23420-56530268-------717---89830232---012111235303754320003
Q gi|254780842|r 124 HCFDA-LANEIQIG-------EEE---VTILLSTG---QQIVGQFLIGSDGRNSSVRRQ 168 (384)
Q Consensus 124 ~~~~~-~v~~i~~~-------~~~---v~v~~~dg---~~i~adlvVgADG~~S~vR~~ 168 (384)
.++.. .+.++..+ +.. +.+.-.+. +++++|=||-|-|=-|.|=+.
T Consensus 153 ~~~~~~~A~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~g~ly~~ 211 (546)
T TIGR00551 153 EIIEGEVALDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGLGKLYSF 211 (546)
T ss_pred EECCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCCCHHHHH
T ss_conf 41012144444422502479888799999971678723776301000320773210031
No 200
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.07 E-value=1.2e-05 Score=60.38 Aligned_cols=111 Identities=24% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC----CCCE-EEECHH----------H----HHHHHHCCCHH
Q ss_conf 970029999790899999999997898599982885555----7836-888788----------9----99999889947
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ----DLRT-TMLMGE----------G----IDFLKEINVWD 61 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~----~~r~-~~l~~~----------s----~~~L~~lGl~~ 61 (384)
|..++|+|||||.||+-+|..++|.|++|.++|-++... ..-. ..++++ + ++-++.||=
T Consensus 1 ~m~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~emrp~~~tpah~~d~iaem~CnpSigg~~~~~akG~L~~EidaLgg-- 78 (434)
T PRK05335 1 MMMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDKFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS-- 78 (434)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--
T ss_conf 998856998986899999999996899679999335667776246663687356456888644420589999998469--
Q ss_pred HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 8886047123418994257655454443450222875312011100000000123664798323420565302687
Q gi|254780842|r 62 FLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGE 137 (384)
Q Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~ 137 (384)
+--....-..+ + + ... ..|.|....+.+.+.+.+.+++.+....|+++..++
T Consensus 79 -lm~~~aD~~~v------------P-----A----g~a--laVDR~~y~~~m~~~l~~~pni~i~~~eV~~i~~~~ 130 (434)
T PRK05335 79 -LIIEAADAHRV------------P-----A----GGA--LAVDREGFSAYVTEALKNHPLITVIREEVTEIPEDG 130 (434)
T ss_pred -HHHHHHHHHCC------------C-----C----CCH--HHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf -89999898667------------8-----7----217--899899999999999974999499984402557889
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=5.4e-05 Score=55.54 Aligned_cols=100 Identities=11% Similarity=0.222 Sum_probs=62.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+++|+.+.. |..+
T Consensus 176 ~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~l---------------L~~~--------------------------- 213 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI---------------CPGT--------------------------- 213 (466)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC---------------CCCC---------------------------
T ss_conf 7999958589999999998619847899833421---------------4343---------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECC-----CCCEEEEEEEEEEC
Q ss_conf 5444345022287531201110000000012366479832342056530268717898302-----32012111235303
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLS-----TGQQIVGQFLIGSD 159 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~-----dg~~i~adlvVgAD 159 (384)
-.++.+.+.+.+.+.+....++.++..+...++++.++++ +++++++|.|+.|-
T Consensus 214 ---------------------D~~~~~~l~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~ 272 (466)
T PRK06115 214 ---------------------DGETAKTLQKALAKQGMRFKLGSKVTQATAGADGVSLTLEPAAGGAAESLQADYVLVAI 272 (466)
T ss_pred ---------------------CCHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEE
T ss_conf ---------------------41236888889987694999589899999849969999997558850489716999941
Q ss_pred CCCCCCCC
Q ss_conf 75432000
Q gi|254780842|r 160 GRNSSVRR 167 (384)
Q Consensus 160 G~~S~vR~ 167 (384)
|+..++..
T Consensus 273 Gr~Pn~~~ 280 (466)
T PRK06115 273 GRRPYTQG 280 (466)
T ss_pred CCCCCCCC
T ss_conf 67657765
No 202
>PRK09897 hypothetical protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=60.63 Aligned_cols=144 Identities=10% Similarity=0.074 Sum_probs=77.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCC-------
Q ss_conf 97002999979089999999999789--859998288555578368887889999998899478886047123-------
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVS------- 71 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~------- 71 (384)
||+ |+|||+||+|+.+-..|-+.+ +.++|+|+.....-.--+.=..++-..|..+-- .++.+...++.
T Consensus 1 mkr--IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas-~EIPpi~~t~~~WL~~q~ 77 (535)
T PRK09897 1 MKK--IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIAS-IEIPPIYCTYLEWLQKQE 77 (535)
T ss_pred CCE--EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHCC
T ss_conf 950--79966786249999998646998269998215667789986854455888750310-558851356999987388
Q ss_pred --CEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCH-------HHHHHHHHHHCCCCC--CCCEEEEEECCCCEEE
Q ss_conf --41899425765545444345022287531201110000-------000012366479832--3420565302687178
Q gi|254780842|r 72 --SFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVL-------MESFAEKISQDPLIH--CFDALANEIQIGEEEV 140 (384)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L-------~~~L~~~~~~~~~~~--~~~~~v~~i~~~~~~v 140 (384)
....+.... ...+.. ..++|-.| ...|.+.+++.+... +.+++|+++..+.+++
T Consensus 78 ~~~L~~~~id~------------~~l~~r---qflPRiLlGeYl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv 142 (535)
T PRK09897 78 ASHLQRYGVKK------------ETLHDR---QFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGV 142 (535)
T ss_pred HHHHHHCCCCH------------HHCCCC---CEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCE
T ss_conf 87898719983------------226410---100488888999999999999998659669997576667644369955
Q ss_pred EEECCCC-CEEEEEEEEEECCCC
Q ss_conf 9830232-012111235303754
Q gi|254780842|r 141 TILLSTG-QQIVGQFLIGSDGRN 162 (384)
Q Consensus 141 ~v~~~dg-~~i~adlvVgADG~~ 162 (384)
++.+.++ +....|++|.|.|=.
T Consensus 143 ~l~~~~~~~~~~FD~vVIaTGH~ 165 (535)
T PRK09897 143 MLATNQDLPSETFDLAVIATGHV 165 (535)
T ss_pred EEEECCCCCCCCCEEEEEECCCC
T ss_conf 99833788764320799807987
No 203
>PRK02106 choline dehydrogenase; Validated
Probab=98.05 E-value=6.2e-06 Score=62.45 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=31.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCC
Q ss_conf 0029999790899999999997-898599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAK-KGFLTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~-~g~~v~iiE~~~ 36 (384)
+||++|||||+||+++|..|+. .+++|+|||+..
T Consensus 5 eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG~ 39 (555)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (555)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 12889989668999999998349898599986899
No 204
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.04 E-value=7.7e-05 Score=54.44 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=68.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+|+|+.+.. |..++ +++.
T Consensus 170 ~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~l---------------l~~~D--~~~~-------------------- 212 (453)
T PRK07846 170 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRL---------------LRHCD--DTIS-------------------- 212 (453)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCC---------------CCCCC--HHHH--------------------
T ss_conf 4999899757999999999529926899746532---------------44347--8999--------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
+.+.+.. +.+.....+..+..++.+++++.+++.||+++++|.|+.|-|+..+
T Consensus 213 --------------------------~~l~~~~-~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~i~~d~vl~a~GR~Pn 265 (453)
T PRK07846 213 --------------------------ERFTEIA-GKKWDLRLGRNVVGVSQDGSGVTLRLDDGSTVDADVLLVATGRVSN 265 (453)
T ss_pred --------------------------HHHHHHH-HCCEEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCC
T ss_conf --------------------------9999998-6485999576899999709835999479969985499997775666
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+-.
T Consensus 266 ~~~ 268 (453)
T PRK07846 266 GDL 268 (453)
T ss_pred CCC
T ss_conf 355
No 205
>KOG1335 consensus
Probab=98.02 E-value=3.1e-05 Score=57.37 Aligned_cols=37 Identities=51% Similarity=0.714 Sum_probs=33.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 7002999979089999999999789859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
+.|||+|||+||.|..+|+--++.|++...+|++...
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 6678899877872589999998715416887315753
No 206
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.02 E-value=0.00019 Score=51.52 Aligned_cols=99 Identities=12% Similarity=0.192 Sum_probs=61.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..+++.|.+|+|+++....+. +.
T Consensus 224 ~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~~L~~-----~D------------------------------------- 261 (541)
T PTZ00052 224 KTLVVGASYVALECAGFLNSLGFDVTVAVRSIVLRG-----FD------------------------------------- 261 (541)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-----CC-------------------------------------
T ss_conf 289989869999999999975985899953776756-----57-------------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
.++.+.|.+.+++.+.....+..+..++..++++.++++||++..+|.|+.|-|+..+
T Consensus 262 ----------------------~di~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~dg~~~~~d~vLvA~GR~Pn 319 (541)
T PTZ00052 262 ----------------------RQCAEKVKEYMEEQGVKFKVGVLPKKLEKVNDKIKVSFSDGTVELYDTVLYATGRKGD 319 (541)
T ss_pred ----------------------HHHHHHHHHHHHHCCCEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCC
T ss_conf ----------------------7799999999985074997454899999739826999768947881289992265564
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+-.
T Consensus 320 t~~ 322 (541)
T PTZ00052 320 IKG 322 (541)
T ss_pred CCC
T ss_conf 577
No 207
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.02 E-value=0.00011 Score=53.21 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=60.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||+.|+-+|..|++.|.+|+|+|+.+..-.. ..+
T Consensus 177 ~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~----~D~------------------------------------ 216 (464)
T PRK05976 177 SLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPT----YDA------------------------------------ 216 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----CCH------------------------------------
T ss_conf 5999899689999999999539869999853655433----388------------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC--EEEEEEEEEECCCC
Q ss_conf 5444345022287531201110000000012366479832342056530268717898302320--12111235303754
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQ--QIVGQFLIGSDGRN 162 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~--~i~adlvVgADG~~ 162 (384)
++.+.+.+.+++.+...+.+..+..+...++...+.+.+|+ ++++|.|+.|-|+.
T Consensus 217 -----------------------~~~~~~~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~g~~~~i~~D~vl~a~Gr~ 273 (464)
T PRK05976 217 -----------------------ELTKPVARLLKKLGVRVLTGAKVLGLTLDGGVLIVAEHNGEEKTLEADKVLVSVGRR 273 (464)
T ss_pred -----------------------HHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEECEEEEECCCC
T ss_conf -----------------------899999999997697998088899999439989999828977999836899914875
Q ss_pred CCCCC
Q ss_conf 32000
Q gi|254780842|r 163 SSVRR 167 (384)
Q Consensus 163 S~vR~ 167 (384)
.++..
T Consensus 274 Pn~~~ 278 (464)
T PRK05976 274 PNTEG 278 (464)
T ss_pred CCCCC
T ss_conf 56355
No 208
>KOG2665 consensus
Probab=98.01 E-value=4.5e-05 Score=56.13 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=82.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC------CCCE----EEECHHHHHH-HHHCC---CHHHHHHC
Q ss_conf 00299997908999999999978--98599982885555------7836----8887889999-99889---94788860
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ------DLRT----TMLMGEGIDF-LKEIN---VWDFLQDI 66 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~------~~r~----~~l~~~s~~~-L~~lG---l~~~l~~~ 66 (384)
+||.+|||||++||+.|..|.-+ +.+|.|+|+..... +.+. +...|+++.+ |.-=| +++.....
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~ 127 (453)
T KOG2665 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEK 127 (453)
T ss_pred CCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHHHHCEEECCCCCCEEEEEEEECCCCCCHHHHHCCHHHHHHHHHHC
T ss_conf 55479988843222556777631787257754000102155125666505643441776600011034299999985240
Q ss_pred CCC------------------------------CCCEEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHH
Q ss_conf 471------------------------------23418994257655454443450222875312011100000000123
Q gi|254780842|r 67 AEP------------------------------VSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEK 116 (384)
Q Consensus 67 ~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~ 116 (384)
..| +.+++.++..+-....+...-.. ....++-| ++.-+.+...+-+.
T Consensus 128 ~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvk-Al~sPhtG-IvD~~~v~ls~~ed 205 (453)
T KOG2665 128 KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVK-ALLSPHTG-IVDWGSVTLSFGED 205 (453)
T ss_pred CCCHHHCCEEEEEECHHHCCHHHHHHHHHHHCCCCCEEEECCCHHHHCCHHHHHHH-HHCCCCCC-EEEHHHHHHHHHHH
T ss_conf 79734506389971721150389999765225999706531211333173554446-54488766-04357899999888
Q ss_pred HHHCCCCCCCCEEEEEECCCCEE-----EEEECCCCCEEEEEEEEEECCCCCC-CCCCCCC
Q ss_conf 66479832342056530268717-----8983023201211123530375432-0003787
Q gi|254780842|r 117 ISQDPLIHCFDALANEIQIGEEE-----VTILLSTGQQIVGQFLIGSDGRNSS-VRRQMGY 171 (384)
Q Consensus 117 ~~~~~~~~~~~~~v~~i~~~~~~-----v~v~~~dg~~i~adlvVgADG~~S~-vR~~l~~ 171 (384)
.+..+.-...+-.+..+.++.+. ++|.-..++++++.++|.|-|..|- +....|.
T Consensus 206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665 206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred HHHHCCCCCCCCEECCCHHCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCHHHHHHHHCC
T ss_conf 9874541215641012010367888886699458552257767887336337678897489
No 209
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.99 E-value=2.5e-05 Score=57.98 Aligned_cols=35 Identities=43% Similarity=0.549 Sum_probs=32.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
-|+|||+|.|||++|+.....|-+|+|+||.+...
T Consensus 411 rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lG 445 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 68998975799999999997799579995789888
No 210
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.99 E-value=1.1e-05 Score=60.63 Aligned_cols=36 Identities=36% Similarity=0.563 Sum_probs=33.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.+||+|||+|.||+++|+..++.|.+|+||||.+..
T Consensus 11 e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~ 46 (584)
T PRK12835 11 TVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 538799896789999999999889958999699998
No 211
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.98 E-value=5.7e-05 Score=55.38 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=33.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 0029999790899999999997898599982885555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
.+||+|||||-+|+.+|+..++.+.+|+|+||....+
T Consensus 13 d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ikR 49 (894)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAHVRH 49 (894)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7787998897268899999760699589985456665
No 212
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.97 E-value=8.7e-05 Score=54.05 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=69.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+|+|+.+.. |..++ +++.
T Consensus 171 ~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~l---------------L~~~D--~~i~-------------------- 213 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL---------------LRHLD--EDIS-------------------- 213 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC---------------CCCCC--HHHH--------------------
T ss_conf 6999888689999999999619949999967622---------------33348--8999--------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
+.+.+ +.+.+.....+..+..++..++++.+++++|+++++|.|+.|-|+..+
T Consensus 214 --------------------------~~l~~-~~~~~~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~d~vl~a~GR~Pn 266 (452)
T TIGR03452 214 --------------------------DRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred --------------------------HHHHH-HHHCCEEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCC
T ss_conf --------------------------99999-975682999323899999739803999469979982289992487666
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+..
T Consensus 267 ~~~ 269 (452)
T TIGR03452 267 GDL 269 (452)
T ss_pred CCC
T ss_conf 366
No 213
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.97 E-value=0.00021 Score=51.18 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=79.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
++|||||+.|+=+|..+++.|.+|+|+|+.+..- ... |
T Consensus 176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iL---------------p~~---D------------------------ 213 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------------PGE---D------------------------ 213 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC---------------CCC---C------------------------
T ss_conf 9998988899999999998699789994688778---------------877---9------------------------
Q ss_pred CCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC--EEEEEEEEEECCCCC
Q ss_conf 444345022287531201110000000012366479832342056530268717898302320--121112353037543
Q gi|254780842|r 86 PDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQ--QIVGQFLIGSDGRNS 163 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~--~i~adlvVgADG~~S 163 (384)
.++.+.+.+.+.+.+.....+..+..++..++++.+.+++|+ ++++|.++.|-|+..
T Consensus 214 ---------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vL~AiGR~P 272 (454)
T COG1249 214 ---------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred ---------------------HHHHHHHHHHHHHCCEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf ---------------------99999999999858959983536999981698089999469776799849999327866
Q ss_pred CCCCCCCCCCCCCCCCE-EEEEEE
Q ss_conf 20003787332222430-478764
Q gi|254780842|r 164 SVRRQMGYGENKWSYPQ-KALVLN 186 (384)
Q Consensus 164 ~vR~~l~~~~~~~~y~~-~~l~~~ 186 (384)
++-. +|++..+..... .++..+
T Consensus 273 n~~~-LgLe~~Gv~~~~rg~I~VD 295 (454)
T COG1249 273 NTDG-LGLENAGVELDDRGFIKVD 295 (454)
T ss_pred CCCC-CCCHHCCCEECCCCCEEEC
T ss_conf 8888-7805329146799988768
No 214
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.95 E-value=1.2e-05 Score=60.24 Aligned_cols=55 Identities=33% Similarity=0.384 Sum_probs=39.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE-----E----CHHHHHHHHHCCC
Q ss_conf 29999790899999999997898599982885555783688-----8----7889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM-----L----MGEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~-----l----~~~s~~~L~~lGl 59 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+.-.=.+. | -..-+..|+++|+
T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV 497 (993)
T PRK12775 434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGV 497 (993)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 0899783788999999999779964897168889972684377767888999999999987894
No 215
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.93 E-value=1.4e-05 Score=59.86 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=39.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE-----EC----HHHHHHHHHCCC
Q ss_conf 29999790899999999997898599982885555783688-----87----889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM-----LM----GEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~-----l~----~~s~~~L~~lGl 59 (384)
-|+|||+|||||++|..|++.|++|+|||+.+.+.-.=.+. |. ..-++.|+++|+
T Consensus 308 kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV 371 (944)
T PRK12779 308 PIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGG 371 (944)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCE
T ss_conf 6799885768999999999779933999447878855895587666878999999999996783
No 216
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.91 E-value=0.00015 Score=52.35 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=67.0
Q ss_pred EEEEECCCHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 299997908999999999978---98599982885555783688878899999988994788860471234189942576
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK---GFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~---g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
+|+|||||.||+++|..|+++ +++|+|+|+++... ++|- | ..+... .
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~------y~~~----l------p~~~~g--------------~ 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP------YSGM----L------PGMIAG--------------H 50 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCE------ECCH----H------HHHHHC--------------C
T ss_conf 99999960999999999704178998399999988651------6251----6------999740--------------4
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 55454443450222875312011100000000123664798323420565302687178983023201211123530375
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGR 161 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~ 161 (384)
....+.. --+.+.+.+. .+.+...+|+.++..... |++++|+++..|+||-|-|.
T Consensus 51 --------~~~~~i~--------------~~~~~~~~~~-gv~~i~~~V~~ID~~~k~--V~~~~g~~l~YD~LViAtGs 105 (364)
T TIGR03169 51 --------YSLDEIR--------------IDLRRLARQA-GARFVIAEATGIDPDRRK--VLLANRPPLSYDVLSLDVGS 105 (364)
T ss_pred --------CCHHHEE--------------CCHHHHHHHC-CCEEEEEEEEEEECCCCE--EEECCCCEEECCEEEEECCC
T ss_conf --------7799922--------------1689999777-949996378999768898--99889988736889994367
Q ss_pred CCCCCCC
Q ss_conf 4320003
Q gi|254780842|r 162 NSSVRRQ 168 (384)
Q Consensus 162 ~S~vR~~ 168 (384)
....-..
T Consensus 106 ~~~~~~i 112 (364)
T TIGR03169 106 TTPLSGV 112 (364)
T ss_pred CCCCCCC
T ss_conf 7788999
No 217
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.90 E-value=9.7e-05 Score=53.70 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=46.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHC
Q ss_conf 70029999790899999999997898599982885555783688878---899999988994788860
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMG---EGIDFLKEINVWDFLQDI 66 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~---~s~~~L~~lGl~~~l~~~ 66 (384)
++||++||||||.|-.+|+--++.|++|.|+|-... ..+++.++- +|..+|..-+.+..++..
T Consensus 122 ~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd--~lGGTClNrGCIPSKALL~as~~~re~~~~ 187 (673)
T PTZ00153 122 EEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDED--CIGGTCVNVGCIPSKALLYATGKYRELKNL 187 (673)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC--CCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 357989999876289999999984986999936878--747724277732119999873579988614
No 218
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.90 E-value=1.9e-05 Score=58.91 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=33.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 002999979089999999999789859998288555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
..||+|||+|+|||.+|+.++++|.+|+|+||.+..
T Consensus 15 ~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~ 50 (533)
T PRK07804 15 AADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALT 50 (533)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 268899996499999999998679988999788999
No 219
>PRK13748 putative mercuric reductase; Provisional
Probab=97.89 E-value=0.00026 Score=50.58 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 420565302687178983023201211123530375432000
Q gi|254780842|r 126 FDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 126 ~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~ 167 (384)
.+..+..++..++.+.++..+| ++++|.|+.|-|+..++..
T Consensus 329 ~~~~v~~v~~~~~~~~v~~~~g-~i~~d~vLvA~GR~PNt~~ 369 (561)
T PRK13748 329 EHTQASQVAHDDGEFVLTTNHG-ELRADKLLVATGRTPNTRS 369 (561)
T ss_pred CCCEEEEEEECCCEEEEEECCC-EEEECEEEEECCCEEECCC
T ss_conf 6978999997299899996896-6985789996061034544
No 220
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=2.2e-05 Score=58.47 Aligned_cols=57 Identities=35% Similarity=0.370 Sum_probs=42.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC---------CCCE--EEE------CHHHHHHHHHCCCHHH
Q ss_conf 9999790899999999997898599982885555---------7836--888------7889999998899478
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ---------DLRT--TML------MGEGIDFLKEINVWDF 62 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~---------~~r~--~~l------~~~s~~~L~~lGl~~~ 62 (384)
|+|+|||+|||++|..|+..|++|+|+|.++... |.+- ..| =+|-+..|++++..+.
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~ 76 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDR 76 (485)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHCCCHHE
T ss_conf 89974627888999999868985399842676686131115599984211567842368999997662785110
No 221
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.86 E-value=2.4e-05 Score=58.19 Aligned_cols=37 Identities=38% Similarity=0.547 Sum_probs=33.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++.||+|||+|.+||++|..|.|.|++|+|+|-+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8888689989726888999987646818999864677
No 222
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.85 E-value=0.00045 Score=48.79 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=60.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+|+|+.+..-.. ..
T Consensus 172 ~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~----~d------------------------------------- 210 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG----ED------------------------------------- 210 (458)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCH----HH-------------------------------------
T ss_conf 5999899747999999999659879999844667830----56-------------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC-CEEEEEEEEEECCCCC
Q ss_conf 544434502228753120111000000001236647983234205653026871789830232-0121112353037543
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG-QQIVGQFLIGSDGRNS 163 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg-~~i~adlvVgADG~~S 163 (384)
.++.+.+.+.+++.+...+.+..+..++...+.+.++..++ +++++|.|+.|-|+..
T Consensus 211 ----------------------~~~~~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vl~a~Gr~P 268 (458)
T PRK06912 211 ----------------------EDIAHILREKLEEDGVEIFTGAALKGLNNYKKQASFEYEGSIQEVNPDFVLVAVGRKP 268 (458)
T ss_pred ----------------------HHHHHHHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCEEEEECCEEEEECCCCC
T ss_conf ----------------------7899999999986695998288799998669879999589638996479999048766
Q ss_pred CCCC
Q ss_conf 2000
Q gi|254780842|r 164 SVRR 167 (384)
Q Consensus 164 ~vR~ 167 (384)
++..
T Consensus 269 n~~~ 272 (458)
T PRK06912 269 RVQQ 272 (458)
T ss_pred CCCC
T ss_conf 4255
No 223
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.84 E-value=2.6e-05 Score=57.87 Aligned_cols=37 Identities=38% Similarity=0.564 Sum_probs=33.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 0029999790899999999997898599982885555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
.||++|||||++|+++|..+++.|.+|+|+||++...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9758998776268899999997598799996256678
No 224
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.83 E-value=0.00024 Score=50.75 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=65.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+|+|+.+.. |... |
T Consensus 160 ~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~i---------------l~~~---D----------------------- 198 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASLF---------------LPRE---D----------------------- 198 (441)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------------CCCC---H-----------------------
T ss_conf 7999898589999999999759878897046732---------------6631---1-----------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
.++.+.+.+.+++.+...+++..+..++..++.+.+..+++ ++.+|.|+.|-|+..+
T Consensus 199 ----------------------~~~~~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~-~~~~d~vlva~Gr~Pn 255 (441)
T PRK08010 199 ----------------------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred ----------------------HHHHHHHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCC-EEEEEEEEEECCCCCC
T ss_conf ----------------------46899999999878859973867999995399899997686-7866489994476655
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+-.
T Consensus 256 ~~~ 258 (441)
T PRK08010 256 TAS 258 (441)
T ss_pred CCC
T ss_conf 444
No 225
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.80 E-value=3.6e-05 Score=56.84 Aligned_cols=38 Identities=45% Similarity=0.582 Sum_probs=34.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 70029999790899999999997898599982885555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
.+|||+|||||.|||.+|+.++..|.+|.++||.+...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 11698998784888999999996699579997236889
No 226
>PRK06854 adenylylsulfate reductase; Validated
Probab=97.78 E-value=4.9e-05 Score=55.85 Aligned_cols=37 Identities=38% Similarity=0.516 Sum_probs=33.2
Q ss_pred EEEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCCCC
Q ss_conf 0029999790899999999997--898599982885555
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAK--KGFLTALVSPRSFLQ 39 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~--~g~~v~iiE~~~~~~ 39 (384)
++||+|||+|+|||.+|+.+++ .|.+|+|++|.....
T Consensus 11 ~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~~ 49 (610)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANIDR 49 (610)
T ss_pred ECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 769999997699999999998778999799998999996
No 227
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.77 E-value=0.00034 Score=49.72 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=59.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.|+|||||..|+-+|..|++.|.+|+|+|+.+..-.. ..+.
T Consensus 171 ~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~----~d~~----------------------------------- 211 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL----TDPE----------------------------------- 211 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC----CCHH-----------------------------------
T ss_conf 6999998678879999998469869999624754321----4999-----------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC---CEEEEEEEEEECCC
Q ss_conf 544434502228753120111000000001236647983234205653026871789830232---01211123530375
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG---QQIVGQFLIGSDGR 161 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg---~~i~adlvVgADG~ 161 (384)
+.+.+.+.+.+. ...+.+..+..++..++.+.+++.++ +++++|.|+.|=|.
T Consensus 212 ------------------------~~~~~~~~l~~~-i~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~i~~D~vl~aiG~ 266 (460)
T PRK06292 212 ------------------------ISDQAQKLLSKE-FKIKLGAKVTSVERKGDKVEVEYEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred ------------------------HHHHHHHHHHCC-CEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf ------------------------999999998609-8899287799999759979999954996289995289991375
Q ss_pred CCCCCC
Q ss_conf 432000
Q gi|254780842|r 162 NSSVRR 167 (384)
Q Consensus 162 ~S~vR~ 167 (384)
..++..
T Consensus 267 ~Pn~~~ 272 (460)
T PRK06292 267 RPNTDG 272 (460)
T ss_pred CCCCCC
T ss_conf 135556
No 228
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00048 Score=48.60 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC----EEEEEEEEEECCCCCCCCC
Q ss_conf 00012366479832342056530268717898302320----1211123530375432000
Q gi|254780842|r 111 ESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQ----QIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 111 ~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~----~i~adlvVgADG~~S~vR~ 167 (384)
+.+.+.+.+.+...+++.++.+++..++++.+.+.+++ ++++|.|+.|-|+..++..
T Consensus 228 ~~~~~~l~~~gi~i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~ 288 (475)
T PRK06327 228 KEALKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCC
T ss_conf 9999988736929970889999995487399999938998799998199993263614545
No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.76 E-value=0.00021 Score=51.27 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=66.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 9700299997908999999999978--98599982885555783688878899999988994788860471234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|| |+||||||||+++|..|+|. +.+|+++|+.+...-.++. + .. .+
T Consensus 1 Mk---vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~~-l-----p~--------~~--------------- 48 (443)
T PRK09564 1 MK---IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGACG-L-----PY--------FV--------------- 48 (443)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-H-----HH--------HH---------------
T ss_conf 96---99999609999999999814939999999488987776552-0-----34--------44---------------
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE-CCCCCE--EEEEEE
Q ss_conf 57655454443450222875312011100000000123664798323420565302687178983-023201--211123
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTIL-LSTGQQ--IVGQFL 155 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~-~~dg~~--i~adlv 155 (384)
.+. ... .. .+.....+...+.+.....+.++..++.....+.+. ..+++. ..+|-|
T Consensus 49 ~~~-~~~------~~--------------~~~~~~~~~~~~~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~L 107 (443)
T PRK09564 49 GGF-FDD------PN--------------NMIARTPEEFIKSGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKL 107 (443)
T ss_pred CCC-CCC------HH--------------HHHHHCHHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEE
T ss_conf 055-589------89--------------987419999998799999388899997468648998468761661346789
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 530375432000378
Q gi|254780842|r 156 IGSDGRNSSVRRQMG 170 (384)
Q Consensus 156 VgADG~~S~vR~~l~ 170 (384)
|-|.|++..+-..-|
T Consensus 108 iiATGs~p~~p~i~g 122 (443)
T PRK09564 108 MIATGARPIIPPIKN 122 (443)
T ss_pred EEECCCCCCCCCCCC
T ss_conf 996167523699887
No 230
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.76 E-value=3.4e-05 Score=57.02 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=33.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97002999979089999999999789859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|-+.||+|||+|+|||.+|+.+++. .+|+|+||.+..
T Consensus 1 m~~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~ 37 (510)
T PRK08071 1 MPSADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKR 37 (510)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCC
T ss_conf 9979999999659999999983658-987999798999
No 231
>KOG1276 consensus
Probab=97.71 E-value=1e-04 Score=53.60 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=54.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEE--EEEECCCCCC----C------------CCEE----EECHHHHHHHHHCCCHH
Q ss_conf 02999979089999999999789859--9982885555----7------------8368----88788999999889947
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLT--ALVSPRSFLQ----D------------LRTT----MLMGEGIDFLKEINVWD 61 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v--~iiE~~~~~~----~------------~r~~----~l~~~s~~~L~~lGl~~ 61 (384)
.+|+|||||++||++|..|++.+-++ +++|..+-.. . +|++ ....+.+..++.+|+.+
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~ 91 (491)
T KOG1276 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLED 91 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 66999888536889999998548995599984278666525632689854421377756768830457899998708631
Q ss_pred HHHH--CCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8886--047123418994257655454443
Q gi|254780842|r 62 FLQD--IAEPVSSFRLVDITDRLITAPDAI 89 (384)
Q Consensus 62 ~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (384)
++.. ..+|....+...+.++....|...
T Consensus 92 e~~~i~~~~paaknr~l~~~~~L~~vP~sl 121 (491)
T KOG1276 92 ELQPIDISHPAAKNRFLYVPGKLPTVPSSL 121 (491)
T ss_pred EEEECCCCCHHHHHEEECCCCCCCCCCCCC
T ss_conf 143358878224304623676435587433
No 232
>PRK06370 mercuric reductase; Validated
Probab=97.71 E-value=0.00052 Score=48.33 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=62.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+++|+.+.. |...
T Consensus 172 ~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~l---------------l~~~--------------------------- 209 (459)
T PRK06370 172 HLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRL---------------LPRE--------------------------- 209 (459)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCC---------------CCCC---------------------------
T ss_conf 4999898477999999999639889999965734---------------5554---------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECC---CCCEEEEEEEEEECCC
Q ss_conf 5444345022287531201110000000012366479832342056530268717898302---3201211123530375
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLS---TGQQIVGQFLIGSDGR 161 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~---dg~~i~adlvVgADG~ 161 (384)
-.++.+.+.+.+++.+...+++.++..++.+++++.+++. +++++++|.|+.|-|.
T Consensus 210 ---------------------d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr 268 (459)
T PRK06370 210 ---------------------DEDVAEAVREILEREGIDVRLDAKCLRVARDGDGIAVGLDCAGGAPEIAGSHILVAVGR 268 (459)
T ss_pred ---------------------CHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCEEEEEEEEEEEEECC
T ss_conf ---------------------75678999999985298620275789999829989999997997389997589996143
Q ss_pred CCCCCC
Q ss_conf 432000
Q gi|254780842|r 162 NSSVRR 167 (384)
Q Consensus 162 ~S~vR~ 167 (384)
..++-.
T Consensus 269 ~Pnt~~ 274 (459)
T PRK06370 269 VPNTDD 274 (459)
T ss_pred CCCCCC
T ss_conf 146555
No 233
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.70 E-value=6e-05 Score=55.20 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=32.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 29999790899999999997898599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
+++|||||+||+++|+-|++.|++|.++||++...
T Consensus 126 svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 35998684898999999997598089994178645
No 234
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.70 E-value=0.00033 Score=49.79 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=79.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
-++|||||-.|+=+|..+++.|.+|+|+|-.+.. |-. .
T Consensus 180 slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI---------------Lp~----------------------~----- 217 (481)
T TIGR01350 180 SLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI---------------LPG----------------------E----- 217 (481)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---------------CCC----------------------C-----
T ss_conf 6699878667788999998539808999457500---------------354----------------------3-----
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCC-CCCCCCEEEE--EECCCCEEEE--EECCCC---CEEEEEEEE
Q ss_conf 5444345022287531201110000000012366479-8323420565--3026871789--830232---012111235
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDP-LIHCFDALAN--EIQIGEEEVT--ILLSTG---QQIVGQFLI 156 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~-~~~~~~~~v~--~i~~~~~~v~--v~~~dg---~~i~adlvV 156 (384)
-.++-+.+.+.+++.+ .....+++|+ .++.+++.++ +..+++ +++++|.+.
T Consensus 218 ---------------------D~evSk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vL 276 (481)
T TIGR01350 218 ---------------------DAEVSKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVL 276 (481)
T ss_pred ---------------------CHHHHHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf ---------------------16899999999974498498548544233577528789999998799805889873999
Q ss_pred EECCCCCCCCC
Q ss_conf 30375432000
Q gi|254780842|r 157 GSDGRNSSVRR 167 (384)
Q Consensus 157 gADG~~S~vR~ 167 (384)
-|=|++.++-.
T Consensus 277 vavGR~pn~~~ 287 (481)
T TIGR01350 277 VAVGRKPNTEG 287 (481)
T ss_pred EEECCCCCCCC
T ss_conf 98424347676
No 235
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.69 E-value=0.00039 Score=49.24 Aligned_cols=69 Identities=16% Similarity=0.332 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE-EEEECCCCCEEEEEEEEEECCCCCC-----CCCCCCCCCCC
Q ss_conf 000000012366479832342056530268717-8983023201211123530375432-----00037873322
Q gi|254780842|r 107 HVLMESFAEKISQDPLIHCFDALANEIQIGEEE-VTILLSTGQQIVGQFLIGSDGRNSS-----VRRQMGYGENK 175 (384)
Q Consensus 107 ~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~i~adlvVgADG~~S~-----vR~~l~~~~~~ 175 (384)
....+.+++.+.+.+....++++|.+++..++. ..+++++|+++.+|.||-|=|..+. +-+++|+..+.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~ 247 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKMRA 247 (486)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 999999999998558289952078899815870799992578487327799904764678999999862941124
No 236
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=97.69 E-value=0.00023 Score=50.93 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=55.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-. .+.+
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~----~~d~------------------------------------- 40 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLR----GFDE------------------------------------- 40 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCH----HCCH-------------------------------------
T ss_conf 99999889999999999863927899812573302----2798-------------------------------------
Q ss_pred CCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 444345022287531201110000000012366479832342056530268717898302320
Q gi|254780842|r 86 PDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQ 148 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~ 148 (384)
++.+.+.+.+++.+...+++..+++++.++++..+++++|+
T Consensus 41 ----------------------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~gd 81 (82)
T pfam00070 41 ----------------------EIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLETGD 81 (82)
T ss_pred ----------------------HHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCC
T ss_conf ----------------------89999999998669999749999999996999999998899
No 237
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.67 E-value=5.3e-05 Score=55.59 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=32.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 70029999790899999999997898599982885
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.+||++|||+|.+|+++|.-|+..|.+|+|+|...
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 88998998987136899999857998289995788
No 238
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.65 E-value=0.0007 Score=47.38 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=62.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|-+|+++|+.+..- .+.
T Consensus 159 ~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll---------------~~~--------------------------- 196 (438)
T PRK07251 159 RLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFL---------------PRE--------------------------- 196 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC---------------CCC---------------------------
T ss_conf 69998886458899999983487689998461002---------------444---------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
-.++.+.+.+.+++.+.....+..+.++..+++.+.+.. +++++++|.|+.|-|+..+
T Consensus 197 ---------------------d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~v~~-~~~~~~~d~vl~a~Gr~Pn 254 (438)
T PRK07251 197 ---------------------EPSIAALAKQYMEEDGIEFLQNAHTTEVKNDGDQVVVVT-EDETYRFDALLYATGRKPN 254 (438)
T ss_pred ---------------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEE-ECCEEEEEEEEEECCCCCC
T ss_conf ---------------------636689999999866959996887999995699799998-2778986189992587666
Q ss_pred CCC
Q ss_conf 000
Q gi|254780842|r 165 VRR 167 (384)
Q Consensus 165 vR~ 167 (384)
+..
T Consensus 255 t~~ 257 (438)
T PRK07251 255 TEP 257 (438)
T ss_pred CCC
T ss_conf 665
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=5.8e-05 Score=55.32 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=73.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 002999979089999999999789859998-2885555783688878899999988994788860471234189942576
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALV-SPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~ii-E~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
-|||+||||||||.++|+.-+|+|++.-++ ||--- .+|+.+|+.+-+ +.|.
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGG--------------QvldT~~IENfI---sv~~----------- 262 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG--------------QVLDTMGIENFI---SVPE----------- 262 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC--------------EECCCCCHHHEE---CCCC-----------
T ss_conf 834999868863167899998612111001565188--------------200000333300---5654-----------
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECC---CCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 554544434502228753120111000000001236647983234205653026---87178983023201211123530
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQI---GEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~---~~~~v~v~~~dg~~i~adlvVgA 158 (384)
.+-..|...|.+++++..+-..--.+.+.++. ..+-..+++++|-..+++-+|-|
T Consensus 263 ----------------------teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIls 320 (520)
T COG3634 263 ----------------------TEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILA 320 (520)
T ss_pred ----------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCCCCCCEEEEECCCCEECCCEEEEE
T ss_conf ----------------------5466899999998764682455334342020157888607999547835113169984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 375432000378733222243047876
Q gi|254780842|r 159 DGRNSSVRRQMGYGENKWSYPQKALVL 185 (384)
Q Consensus 159 DG~~S~vR~~l~~~~~~~~y~~~~l~~ 185 (384)
.|++ -| .+++|-+. .|....+..
T Consensus 321 tGAr--WR-n~nvPGE~-e~rnKGVay 343 (520)
T COG3634 321 TGAR--WR-NMNVPGED-EYRNKGVAY 343 (520)
T ss_pred CCCC--HH-CCCCCCHH-HHHHCCEEE
T ss_conf 2764--20-08998568-873178266
No 240
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=9.5e-05 Score=53.74 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 02999979089999999999789---859998288555578368887889999998899478886047123418994257
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKG---FLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITD 80 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g---~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (384)
++|+|||+|++|+.+|..|.+.- -.+.|+|+++.. .++++.+...-. ..+++-..-.....|-..-.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~--G~GiaYs~~~p~--~~lNv~a~~mS~~~pD~p~~F~~--- 74 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF--GQGIAYSTEEPE--HLLNVPAARMSAFAPDIPQDFVR--- 74 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC--CCCCCCCCCCCH--HHHCCCCCCCCCCCCCCCHHHHH---
T ss_conf 51899788657999999998478877756785355545--787557888821--44216202354458998168999---
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCHHHHCCH-------HHHHHHHHHHCCCCCCCCEEEEEECCC--CEEEEEECCCCCEEE
Q ss_conf 65545444345022287531201110000-------000012366479832342056530268--717898302320121
Q gi|254780842|r 81 RLITAPDAIFHSSEIGLDAFGYNIPNHVL-------MESFAEKISQDPLIHCFDALANEIQIG--EEEVTILLSTGQQIV 151 (384)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~L-------~~~L~~~~~~~~~~~~~~~~v~~i~~~--~~~v~v~~~dg~~i~ 151 (384)
..........+..+...+...| .+|..+ ...|.+..+.. .+.....+.+++... ..+..++..||....
T Consensus 75 WL~~~~~~~~d~~~~~~d~~~y-~pR~lfG~Yl~e~l~~l~~~~~~~-~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ 152 (474)
T COG4529 75 WLQKQLQRYRDPEDINHDGQAY-PPRRLFGEYLREQLAALLARGRQT-RVRTIREEATSVRQDTNAGGYLVTTADGPSEI 152 (474)
T ss_pred HHHHCCCCCCCHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEEECCEECCCCCEEEEECCCCCEEE
T ss_conf 9974255657754437765346-615699999999999999736764-04677644430100457735789658887045
Q ss_pred EEEEEEECCC
Q ss_conf 1123530375
Q gi|254780842|r 152 GQFLIGSDGR 161 (384)
Q Consensus 152 adlvVgADG~ 161 (384)
+|.+|.|.|-
T Consensus 153 ad~~Vlatgh 162 (474)
T COG4529 153 ADIIVLATGH 162 (474)
T ss_pred EEEEEEECCC
T ss_conf 0179994368
No 241
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=97.55 E-value=0.00044 Score=48.84 Aligned_cols=313 Identities=15% Similarity=0.208 Sum_probs=154.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCC--------CCCCEEE-------ECH----HHHHHHHHCCC---
Q ss_conf 0299997908999999999978--9859998288555--------5783688-------878----89999998899---
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFL--------QDLRTTM-------LMG----EGIDFLKEINV--- 59 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~--------~~~r~~~-------l~~----~s~~~L~~lGl--- 59 (384)
.||+.|||||=-.||+.+|++. +++++||||-... ++.+++. .+| .++++-+.+||
T Consensus 1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~~A~ESS~pWNNAGTGHSALCELNYtP~~~dG~idi~kAv~ine~ 80 (487)
T TIGR01320 1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDAVALESSNPWNNAGTGHSALCELNYTPEVADGSIDIAKAVGINEQ 80 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 96788656166899999997309995389998607745466766001120136876422478876782653556220114
Q ss_pred -------H---------HHHHHCCCCCCCEEEEECCCCCCC--------CCCCCCCCHHCCC------------------
Q ss_conf -------4---------788860471234189942576554--------5444345022287------------------
Q gi|254780842|r 60 -------W---------DFLQDIAEPVSSFRLVDITDRLIT--------APDAIFHSSEIGL------------------ 97 (384)
Q Consensus 60 -------~---------~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~------------------ 97 (384)
| .+.+.--.|+.++.+.+..+.... .....|..-++..
T Consensus 81 F~VsrQFWa~lv~~G~L~dp~~FiNpVPH~Sfv~G~~~v~YLk~Ry~AL~~~~lF~~m~y~~d~~~~a~~lPLM~~gR~~ 160 (487)
T TIGR01320 81 FQVSRQFWAHLVEEGVLEDPKSFINPVPHVSFVRGSDGVAYLKKRYEALKKHPLFEGMEYSEDKATFAEWLPLMAKGRDF 160 (487)
T ss_pred CEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHCCCCCCCCCC
T ss_conf 11318889899836724685402278885202657066799999999861784313750005868998742545687688
Q ss_pred -CC--CCCH-----HHHCCHHHHHHHHHHHC-CCCCCCCEEEEEECCC-CEEEEEECCC----C--CEEEEEE-EEEECC
Q ss_conf -53--1201-----11000000001236647-9832342056530268-7178983023----2--0121112-353037
Q gi|254780842|r 98 -DA--FGYN-----IPNHVLMESFAEKISQD-PLIHCFDALANEIQIG-EEEVTILLST----G--QQIVGQF-LIGSDG 160 (384)
Q Consensus 98 -~~--~g~~-----i~r~~L~~~L~~~~~~~-~~~~~~~~~v~~i~~~-~~~v~v~~~d----g--~~i~adl-vVgADG 160 (384)
++ ..|+ |.-..|-+-|++.+... +....|+++|.++..+ |+.++|+..| | ++|+|++ .|||=|
T Consensus 161 ~~pvA~~~~~~GTDvdFGalt~Ql~~~~~~~PG~~~~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG 240 (487)
T TIGR01320 161 SEPVAANWVAEGTDVDFGALTKQLLKYLEQEPGTKIRYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGG 240 (487)
T ss_pred CCHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCEEECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCC
T ss_conf 63433212047840027789999999970289816763850001101058853788412208887626766778971574
Q ss_pred CCCCCCCCCCCCCCCCCC-----CEEEEEEE--------------------ECCCCCCCEEEE----------------E
Q ss_conf 543200037873322224-----30478764--------------------114788611788----------------7
Q gi|254780842|r 161 RNSSVRRQMGYGENKWSY-----PQKALVLN--------------------FQHSMPHNGRCV----------------E 199 (384)
Q Consensus 161 ~~S~vR~~l~~~~~~~~y-----~~~~l~~~--------------------~~~~~~~~~~a~----------------~ 199 (384)
--=.+=+..||+. .+.| ...++.+. -.+..||-++=. -
T Consensus 241 ~AL~lLq~SGIpe-vKGFaGFPvSG~fLR~~Npe~~~qH~AKVYG~A~vGAPPmSvpHLDtR~v~Gk~~LlFGPYAGf~~ 319 (487)
T TIGR01320 241 GALPLLQKSGIPE-VKGFAGFPVSGLFLRCSNPELVEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKSLLFGPYAGFSP 319 (487)
T ss_pred CHHHHHHHCCCCC-CCCCCCCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 1688988667987-665336575550001788799985056215778876488875400010255711210157788883
Q ss_pred ECCCCCCCCCCCC---CCCCEEEE---E---EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCEEEEEECCCC
Q ss_conf 2278754210001---23201126---7---507567324553223467887763067546762---1110223202233
Q gi|254780842|r 200 FHKSLGTITQIPL---RENFSSLV---W---IMESQEADFYYKLPVNEIARRLEQYLYPVIGKI---EVVTDVQIFQLSG 267 (384)
Q Consensus 200 ~f~~~G~~a~lP~---~~~~~~iv---w---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~pl~~ 267 (384)
-|.+.|.+.=||. +||-.++. | -+++.-..++. .++++=.+.|+++.|+..... +..+.+ +.-
T Consensus 320 kFLk~Gs~~DLP~SirpDNl~s~L~va~~~~~Lt~YLi~~l~-~~~~~R~~ALrey~PeA~~~DWel~vAGQR----VQv 394 (487)
T TIGR01320 320 KFLKHGSLLDLPLSIRPDNLLSMLGVALAEMDLTKYLIGELR-KSKEERLEALREYYPEARDEDWELIVAGQR----VQV 394 (487)
T ss_pred CHHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCEEEECCEE----EEE
T ss_conf 120176312065432676512378887752047888998760-693578999974064677988358753616----788
Q ss_pred CCCHHHHHC-----CCCEECCCCCCCCCHHH--HHHHHHHH-HHHHHHHHHHCCCCC--CHHHHH
Q ss_conf 430456537-----94210110011384456--53211212-389999998525799--079999
Q gi|254780842|r 268 MISHCFGKK-----RVVLVGEAAHALPPICG--QGLNLSMR-DVIILLNLFQSEHMS--FRAIGN 322 (384)
Q Consensus 268 ~~~~~~~~~-----rv~liGDAAH~~~P~~G--qG~n~ai~-Da~~L~~~l~~~~~~--~~~~l~ 322 (384)
..-+....+ +.-||+||=-++--+.| =|+..|.- =...|-+|+.+.... +.+-|+
T Consensus 395 Ik~d~~~~~G~L~FGT~~v~~~dGsiAaLLGASPGAS~Avs~Ml~ll~~CF~~r~~sPeW~~~LK 459 (487)
T TIGR01320 395 IKKDSEKGFGVLEFGTELVADADGSIAALLGASPGASTAVSIMLELLERCFPERARSPEWEDKLK 459 (487)
T ss_pred EECCCCCCCCCCCCHHEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 74177888830120011130567327887367984234589999999750546687876456420
No 242
>PRK04965 nitric oxide reductase; Provisional
Probab=97.55 E-value=0.0012 Score=45.67 Aligned_cols=113 Identities=20% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 97002999979089999999999789--8599982885555783688878899999988994788860471234189942
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDI 78 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 78 (384)
|++- |+|||+|+||.++|..|++.+ .+++|+++.+...-.|.. |+. .|.. ..
T Consensus 1 M~~~-IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~Y~rp~-Ls~----~~~~----------~~---------- 54 (378)
T PRK04965 1 MSNG-IVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPD-LSH----VFSQ----------GQ---------- 54 (378)
T ss_pred CCCC-EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CHH----HHCC----------CC----------
T ss_conf 9899-99998829999999999711949869999899998876781-669----8828----------99----------
Q ss_pred CCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 57655454443450222875312011100000000123664798323420565302687178983023201211123530
Q gi|254780842|r 79 TDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGS 158 (384)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgA 158 (384)
...+. +. ..-.+-..+.+...+.+.+|+.++.....+ + .+|+++.+|-||-|
T Consensus 55 ------------~~~~l--------~~-----~~~~~~~~~~~I~l~~~~~V~~ID~~~k~V--~-~~g~~~~YDkLVLA 106 (378)
T PRK04965 55 ------------RADDL--------TR-----QSAGEFAEQFNLRLFPHTWVTDIDAEAQVV--K-SQGNQWQYDKLVLA 106 (378)
T ss_pred ------------CHHHH--------HC-----CCHHHHHHHCCEEEECCCEEEEECCCCCEE--E-ECCCEEECCEEEEE
T ss_conf ------------96895--------31-----798999874897998698999984646379--9-58919846879993
Q ss_pred CCCCCCCCC
Q ss_conf 375432000
Q gi|254780842|r 159 DGRNSSVRR 167 (384)
Q Consensus 159 DG~~S~vR~ 167 (384)
-|+++..-.
T Consensus 107 TGa~p~~pp 115 (378)
T PRK04965 107 TGASAFVPP 115 (378)
T ss_pred CCCCCCCCC
T ss_conf 588755789
No 243
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.53 E-value=0.0012 Score=45.67 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 99997908999999999978985999828855557836888788999999889947888604712341899425765545
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITA 85 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (384)
++|||||..|+-+|..|++.|.+|+|+|+.+..-. ..
T Consensus 175 v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~---------------~~---------------------------- 211 (467)
T PRK07818 175 IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP---------------NE---------------------------- 211 (467)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC---------------CC----------------------------
T ss_conf 99999879999999999832987777621131354---------------42----------------------------
Q ss_pred CCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECC---CC--CEEEEEEEEEECC
Q ss_conf 444345022287531201110000000012366479832342056530268717898302---32--0121112353037
Q gi|254780842|r 86 PDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLS---TG--QQIVGQFLIGSDG 160 (384)
Q Consensus 86 ~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~---dg--~~i~adlvVgADG 160 (384)
-.++.+.+.+.+++.+...+.+..+..++.+++...+++. +| +++++|.|+.|-|
T Consensus 212 --------------------d~~~~~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~G 271 (467)
T PRK07818 212 --------------------DAEVSKEIEKQYKKLGVKILTGTKVESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIG 271 (467)
T ss_pred --------------------CHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCC
T ss_conf --------------------267899999999866988855976899998499399999988899469999525898116
Q ss_pred CCCCCCC
Q ss_conf 5432000
Q gi|254780842|r 161 RNSSVRR 167 (384)
Q Consensus 161 ~~S~vR~ 167 (384)
+..++..
T Consensus 272 r~Pn~~~ 278 (467)
T PRK07818 272 FAPNVEG 278 (467)
T ss_pred CCCCCCC
T ss_conf 7504443
No 244
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=97.53 E-value=0.00031 Score=49.99 Aligned_cols=119 Identities=27% Similarity=0.365 Sum_probs=73.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC------CCCEEEECHHHHH---HHHHCCCHHH-HHHCCCCCCCEE
Q ss_conf 29999790899999999997898599982885555------7836888788999---9998899478-886047123418
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ------DLRTTMLMGEGID---FLKEINVWDF-LQDIAEPVSSFR 74 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~------~~r~~~l~~~s~~---~L~~lGl~~~-l~~~~~~~~~~~ 74 (384)
.|.|||||+||.=+|=-||+.|++|.++|-+|... +.=+.-+=.||+. .=...|+++. ++... +.
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~----Sl- 76 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRPKKLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLD----SL- 76 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHH----HH-
T ss_conf 3689718853468999998489727997538765778766666022320210110101201236899988630----79-
Q ss_pred EEECCCCCCCCCCCCCCCHHCCCCCCC-CHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 994257655454443450222875312-011100000000123664798323420565302687178983
Q gi|254780842|r 75 LVDITDRLITAPDAIFHSSEIGLDAFG-YNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTIL 143 (384)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~ 143 (384)
+..-+.....+.-| .-|+|+.+-+.+-+++..+|+|.+...+|++|-. ++++|.
T Consensus 77 -------------iI~aAd~~~VPAGGALaVDR~iFs~s~Te~v~sHPnv~lireEV~EIPe--~~~tvi 131 (444)
T TIGR00137 77 -------------IIEAADEAAVPAGGALAVDRKIFSESVTEKVKSHPNVTLIREEVTEIPE--EEVTVI 131 (444)
T ss_pred -------------HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECC--CCEEEE
T ss_conf -------------9987653368988520112789999887764128845887164005159--970798
No 245
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=97.46 E-value=0.00031 Score=49.95 Aligned_cols=36 Identities=36% Similarity=0.414 Sum_probs=32.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 700299997908999999999978985999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
++||.+|||||+.||++|-.-|++|-+|.|+|-=.+
T Consensus 1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~P 36 (513)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKP 36 (513)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 964279985897346899999860991899963356
No 246
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.44 E-value=0.00013 Score=52.81 Aligned_cols=187 Identities=18% Similarity=0.306 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE-EEEECCCCCEEEEEEEEEE-----------CCCCCCCCCCC---CC
Q ss_conf 000000012366479832342056530268717-8983023201211123530-----------37543200037---87
Q gi|254780842|r 107 HVLMESFAEKISQDPLIHCFDALANEIQIGEEE-VTILLSTGQQIVGQFLIGS-----------DGRNSSVRRQM---GY 171 (384)
Q Consensus 107 ~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~i~adlvVgA-----------DG~~S~vR~~l---~~ 171 (384)
..+-+.|.+.+.+.+..+.+..+|++|..+++. |-|.++||++++++-||.- ||....-.+.+ .+
T Consensus 229 G~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~~~AvGV~L~~G~~~~~k~ivSNATRWDTF~g~~~g~~~~g~~L~~~~~~ 308 (506)
T TIGR02730 229 GQIAEKLVKGLEKHGGKIRYKARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGGQDDGSTRAGQKLLKEENL 308 (506)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 48999999888741640563002455452088455568648836521167631642345677643113566764200258
Q ss_pred CCCCCC----CCE--EEEEEE--ECCCCCCCE-EE--------EE-ECCCCCCC-CCCCC-------CCCCEEEEEEECH
Q ss_conf 332222----430--478764--114788611-78--------87-22787542-10001-------2320112675075
Q gi|254780842|r 172 GENKWS----YPQ--KALVLN--FQHSMPHNG-RC--------VE-FHKSLGTI-TQIPL-------RENFSSLVWIMES 225 (384)
Q Consensus 172 ~~~~~~----y~~--~~l~~~--~~~~~~~~~-~a--------~~-~f~~~G~~-a~lP~-------~~~~~~ivw~~~~ 225 (384)
|..+.. |.+ +++... |+.+.-+.+ .+ |+ .-.+.|.+ .-+|. ++++ .++...++
T Consensus 309 P~~E~~w~~~Y~~sPSFLSlHlGV~~d~lP~gT~CHH~~LEDdW~~l~~~~G~iFvSiPtlLDp~LAP~G~-HI~H~FTp 387 (506)
T TIGR02730 309 PKKEKKWRRNYVKSPSFLSLHLGVKADVLPEGTECHHILLEDDWDNLEKEQGTIFVSIPTLLDPSLAPEGY-HIIHTFTP 387 (506)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEECCCCCCCCCCCCCC-EEEEEECC
T ss_conf 63478999851378860330004200147888961378852670200678866999722202730277984-79985062
Q ss_pred HHHHHHHHHHHHH-----------HHHHHHH-CCCCCCCCCC--CCEEEE-----------EE-CCCCCCC--------H
Q ss_conf 6732455322346-----------7887763-0675467621--110223-----------20-2233430--------4
Q gi|254780842|r 226 QEADFYYKLPVNE-----------IARRLEQ-YLYPVIGKIE--VVTDVQ-----------IF-QLSGMIS--------H 271 (384)
Q Consensus 226 ~~~~~~~~~~~~~-----------~~~~l~~-~~~~~~~~~~--~~~~~~-----------~~-pl~~~~~--------~ 271 (384)
...+.|.++++++ +.++|++ .||..-..+. .++-+. .| |+..... +
T Consensus 388 s~~e~W~gLSp~dY~AKKE~~a~r~I~RLE~~ifPGL~~~~~~~EvGTPr~HRRfLgR~~GtYGPiPr~~l~GLL~MPFN 467 (506)
T TIGR02730 388 SSLEDWQGLSPKDYEAKKEADAERLIDRLEKTIFPGLDEALDYKEVGTPRTHRRFLGRESGTYGPIPRRKLKGLLPMPFN 467 (506)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 02655317884243323177899999987664065602415433247886202212568788588887778877658851
Q ss_pred HHHHCCCCEECCCCCCCCCHHHHHHHHH
Q ss_conf 5653794210110011384456532112
Q gi|254780842|r 272 CFGKKRVVLVGEAAHALPPICGQGLNLS 299 (384)
Q Consensus 272 ~~~~~rv~liGDAAH~~~P~~GqG~n~a 299 (384)
+-.-++.-++||++- =|||+|.-
T Consensus 468 ~Tai~gLYCVGDS~F-----PGQGl~AV 490 (506)
T TIGR02730 468 RTAIPGLYCVGDSCF-----PGQGLNAV 490 (506)
T ss_pred CCCCCCCEEECCCCC-----CCCCHHHH
T ss_conf 003576155046578-----87533676
No 247
>KOG3923 consensus
Probab=97.42 E-value=0.0021 Score=43.83 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC-------CEEEEEECCCCCC---CCCEEEECHH-----HHHHHHHCC-----CH
Q ss_conf 97002999979089999999999789-------8599982885555---7836888788-----999999889-----94
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG-------FLTALVSPRSFLQ---DLRTTMLMGE-----GIDFLKEIN-----VW 60 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g-------~~v~iiE~~~~~~---~~r~~~l~~~-----s~~~L~~lG-----l~ 60 (384)
|+.-+|+|||+|..||++|+.+.+.+ .+|.|++.+.+.. +..+..+.|. +.+.-.+++ -|
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l 80 (342)
T KOG3923 1 NKTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL 80 (342)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99760899747710156899999865412688622787457786555554346421114678970788999879999999
Q ss_pred HHHHH------CCC-CCCCEEEEECCCCCCC----CCCCCCCCH-----HC---------CCCCCCCHHHHCCHHHHHHH
Q ss_conf 78886------047-1234189942576554----544434502-----22---------87531201110000000012
Q gi|254780842|r 61 DFLQD------IAE-PVSSFRLVDITDRLIT----APDAIFHSS-----EI---------GLDAFGYNIPNHVLMESFAE 115 (384)
Q Consensus 61 ~~l~~------~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~---------~~~~~g~~i~r~~L~~~L~~ 115 (384)
..+.. .+. -++....++. ..... -.+...... +. +...-.|..+-..++.-|.+
T Consensus 81 ~~l~rs~~a~~aGV~l~sg~~ls~~-e~~~~~~~~w~diV~~fr~l~e~EL~~f~~~~~~G~~~Tt~~sE~~~ylpyl~k 159 (342)
T KOG3923 81 AHLARSEEAGEAGVCLVSGHILSDS-ESLDDQQRSWGDIVYGFRDLTERELLGFPDYSTYGIHFTTYLSEGPKYLPYLKK 159 (342)
T ss_pred HHHHCCCCCCCCCEEEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHH
T ss_conf 9986055566462588611674157-873123456877643332179888537888665636677640065456689999
Q ss_pred HHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 366479832342056530268717898302320121112353037543200037873
Q gi|254780842|r 116 KISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYG 172 (384)
Q Consensus 116 ~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~~l~~~ 172 (384)
.+.+++.. +...++.++++-. + -.+|+||.|.|..+. +..|-+
T Consensus 160 ~l~e~Gve-f~~r~v~~l~E~~--------~---~~~DVivNCtGL~a~--~L~gDd 202 (342)
T KOG3923 160 RLTENGVE-FVQRRVESLEEVA--------R---PEYDVIVNCTGLGAG--KLAGDD 202 (342)
T ss_pred HHHHCCCE-EEEEEECCHHHHC--------C---CCCCEEEECCCCCCC--CCCCCC
T ss_conf 99855848-9875605587742--------5---788689987764422--236886
No 248
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.42 E-value=0.00026 Score=50.59 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97002999979089999999999789859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|-.+||+|||||++||.+|..|+..|.+|+|+|+....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 66442799875279889999887267659997055545
No 249
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.0018 Score=44.46 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECCC
Q ss_conf 999979089999999999789--8599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKG--FLTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~ 36 (384)
++|||+|++|+.+|..|.+.+ .++.++...+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~ 33 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREP 33 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 989825599999999998507778859995235
No 250
>KOG2311 consensus
Probab=97.37 E-value=0.00036 Score=49.54 Aligned_cols=151 Identities=21% Similarity=0.307 Sum_probs=74.5
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC-CCC------CCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEE
Q ss_conf 0029999790899999999997898599982885-555------783688878899999988994788860471234189
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS-FLQ------DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRL 75 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~-~~~------~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 75 (384)
+|||+|||||-||+-+|.+-+|.|-+.+++-.+- ... .++++ ... .+..+.+..+.+-...+....++.
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGi--gKg--~LmrEVDALdGl~~rvcD~s~vq~ 103 (679)
T KOG2311 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGI--GKG--HLMREVDALDGLCSRVCDQSGVQY 103 (679)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC--CCC--EEEEEEHHHCCHHHHHHHHHHHHH
T ss_conf 5557998787520488898874187347863255610134457655876--653--024431200256765411555568
Q ss_pred EECCCCCCCCCCCCCCCHHCCCCCCC--CHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEC--CCCE----EEEEECCCC
Q ss_conf 94257655454443450222875312--011100000000123664798323420565302--6871----789830232
Q gi|254780842|r 76 VDITDRLITAPDAIFHSSEIGLDAFG--YNIPNHVLMESFAEKISQDPLIHCFDALANEIQ--IGEE----EVTILLSTG 147 (384)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~g--~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~--~~~~----~v~v~~~dg 147 (384)
.... ...|..-.| -.+.|+..-+.+.+++...++..+.+..|.++. ..++ ..-|.+.||
T Consensus 104 -----------k~LN--rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dg 170 (679)
T KOG2311 104 -----------KVLN--RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDG 170 (679)
T ss_pred -----------HHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEEEECC
T ss_conf -----------7750--257972237087651999999999875268760012200133363168887347778997557
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 0121112353037543200037873
Q gi|254780842|r 148 QQIVGQFLIGSDGRNSSVRRQMGYG 172 (384)
Q Consensus 148 ~~i~adlvVgADG~~S~vR~~l~~~ 172 (384)
+.+.|+-||-..|-. +|.++.+.
T Consensus 171 t~v~a~~VilTTGTF--L~~~I~iG 193 (679)
T KOG2311 171 TVVYAESVILTTGTF--LRGQINIG 193 (679)
T ss_pred CEECCCEEEEEECCC--EEEEEEEC
T ss_conf 273143499961321--22378504
No 251
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.34 E-value=0.00021 Score=51.21 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=40.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--------CCCE-EEECHHHHHHHHHCCC
Q ss_conf 29999790899999999997898599982885555--------7836-8887889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--------DLRT-TMLMGEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--------~~r~-~~l~~~s~~~L~~lGl 59 (384)
.|+||||||+||++|.-|++.|+.|+++|+.+..- +.+. -.+...-+++|++.|+
T Consensus 125 ~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred EEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCC
T ss_conf 7999888951555889998689879982666777447981484464642068999999987490
No 252
>KOG2852 consensus
Probab=97.31 E-value=0.00088 Score=46.64 Aligned_cols=153 Identities=12% Similarity=0.121 Sum_probs=80.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC------CEEEEEECCCCC--CCCCEEE-------------ECHHHHHHHHHCCCHHH
Q ss_conf 02999979089999999999789------859998288555--5783688-------------87889999998899478
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKG------FLTALVSPRSFL--QDLRTTM-------------LMGEGIDFLKEINVWDF 62 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g------~~v~iiE~~~~~--~~~r~~~-------------l~~~s~~~L~~lGl~~~ 62 (384)
-.|.|||||+.|..+|..|++++ +.++|+|++... ....+.+ |.+-+..+-++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~------ 84 (380)
T KOG2852 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEE------ 84 (380)
T ss_pred EEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH------
T ss_conf 07999888704664200344287667784159999603434355664104567663786532235777888887------
Q ss_pred HHHC--CCCCCCEEEEECCCC----CCCCCC------------CCCCCHHCCC-CCCCCHHHHCCHHHHHHHHHHHCCCC
Q ss_conf 8860--471234189942576----554544------------4345022287-53120111000000001236647983
Q gi|254780842|r 63 LQDI--AEPVSSFRLVDITDR----LITAPD------------AIFHSSEIGL-DAFGYNIPNHVLMESFAEKISQDPLI 123 (384)
Q Consensus 63 l~~~--~~~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~-~~~g~~i~r~~L~~~L~~~~~~~~~~ 123 (384)
+.+. +..-.+++....+.- ....+. ..-+....+. ...+ .|+-..+.+.+++++.+.+++
T Consensus 85 LsdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~tta-qvhP~lFc~~i~sea~k~~~V 163 (380)
T KOG2852 85 LSDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTA-QVHPYLFCHFILSEAEKRGGV 163 (380)
T ss_pred HHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCC-EECHHHHHHHHHHHHHHHCCE
T ss_conf 7776268444452243279999602447866677652555567751000136877530-117899999999998862676
Q ss_pred CCCCEEEEEECCCCEEEE-EECC----CCCEEEEEEEEEECCCCC
Q ss_conf 234205653026871789-8302----320121112353037543
Q gi|254780842|r 124 HCFDALANEIQIGEEEVT-ILLS----TGQQIVGQFLIGSDGRNS 163 (384)
Q Consensus 124 ~~~~~~v~~i~~~~~~v~-v~~~----dg~~i~adlvVgADG~~S 163 (384)
.+.-..|.++......+. +..+ ....+..+-+|.|-|-.+
T Consensus 164 ~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT 208 (380)
T KOG2852 164 KLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWT 208 (380)
T ss_pred EEEEEEEEEEECCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCC
T ss_conf 899866688632446121540233048437834238999527873
No 253
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.27 E-value=0.0037 Score=42.07 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=32.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCC
Q ss_conf 97002999979089999999999789--859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~~ 38 (384)
|..-.|+|||||-+|+.+|..|.++. .+++++|+++..
T Consensus 1 ~~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 1 MMKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 9975699989867999999976416788718999188766
No 254
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.24 E-value=0.0034 Score=42.32 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.++|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 176 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ 208 (472)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 599995647289999999852986899960455
No 255
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=97.24 E-value=0.00073 Score=47.26 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=75.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 70029999790899999999997898599982885555783688878899999988994788860471234189942576
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDR 81 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (384)
++||.++||||=.|++.|.--+.+|-+++|+|.+.. +++.++=..+. ++. .|..- ..+..+.. +..+.
T Consensus 1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~L----GGTCVNVGCVP--KKv-MW~aa-~~~e~~~~----~~~~Y 68 (475)
T TIGR01421 1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKL----GGTCVNVGCVP--KKV-MWYAA-SLAETMHR----DAADY 68 (475)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCC----CCEEEEECEEC--CHH-HCCHH-HHHHHHHH----HHCCC
T ss_conf 975469983686157888988850760787620004----88068501137--623-20056-77788752----21027
Q ss_pred CC------CCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCC--CCEEEEE
Q ss_conf 55------454443450222875312011100000000123664798323420565302687178983023--2012111
Q gi|254780842|r 82 LI------TAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLST--GQQIVGQ 153 (384)
Q Consensus 82 ~~------~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~d--g~~i~ad 153 (384)
.. ......|+-..+....-.|+ + .++..|+.-.+...+.+...-..-..+..-.|.|.=++ -+.++|.
T Consensus 69 Gf~~~lPld~~~l~F~f~~l~~~RdaYv-~---rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nttevy~A~ 144 (475)
T TIGR01421 69 GFKSELPLDKENLKFNFKELKEKRDAYV-D---RLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENTTEVYTAP 144 (475)
T ss_pred CCCCCCCCCCCCCEECHHHHHHHHHHHH-H---HHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEECC
T ss_conf 8543364100366007799987667899-9---98887524865055438986788748889634773642430257627
Q ss_pred EEEEECCCCCCCCCCCCCC
Q ss_conf 2353037543200037873
Q gi|254780842|r 154 FLIGSDGRNSSVRRQMGYG 172 (384)
Q Consensus 154 lvVgADG~~S~vR~~l~~~ 172 (384)
-++.|.|.+...=..-+||
T Consensus 145 HIliATGG~p~~phe~~IP 163 (475)
T TIGR01421 145 HILIATGGKPSIPHEENIP 163 (475)
T ss_pred EEEEECCCCCCCCCCCCCC
T ss_conf 0589448724787546778
No 256
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.24 E-value=0.00061 Score=47.80 Aligned_cols=73 Identities=7% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHHH-CCCCCCCCE-EEEEECCC-CEEEEEECCCC---CEEEEEEEEEECCCCCCCCCCCC-CCCCCCCCCEEE-EE
Q ss_conf 0123664-798323420-56530268-71789830232---01211123530375432000378-733222243047-87
Q gi|254780842|r 113 FAEKISQ-DPLIHCFDA-LANEIQIG-EEEVTILLSTG---QQIVGQFLIGSDGRNSSVRRQMG-YGENKWSYPQKA-LV 184 (384)
Q Consensus 113 L~~~~~~-~~~~~~~~~-~v~~i~~~-~~~v~v~~~dg---~~i~adlvVgADG~~S~vR~~l~-~~~~~~~y~~~~-l~ 184 (384)
..+.+.+ ++....... .+..++.. .+.+.++++.+ .+++||-|..|.|+.+++-- || ++..+..++... ++
T Consensus 228 V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~g-L~GLe~~GVk~~~~G~I~ 306 (494)
T TIGR02053 228 VEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPNTDG-LNGLEKAGVKLDERGGIL 306 (494)
T ss_pred HHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCC-CCCHHHCCCEECCCCCEE
T ss_conf 9998414787799804403554445279818999855898745743112555278756666-774234583466885478
Q ss_pred EE
Q ss_conf 64
Q gi|254780842|r 185 LN 186 (384)
Q Consensus 185 ~~ 186 (384)
.+
T Consensus 307 Vd 308 (494)
T TIGR02053 307 VD 308 (494)
T ss_pred EC
T ss_conf 72
No 257
>KOG2844 consensus
Probab=97.20 E-value=0.00055 Score=48.18 Aligned_cols=173 Identities=18% Similarity=0.220 Sum_probs=88.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC----EE---EECH--HHHHHHH--HCCCHHHHH-HCCC---
Q ss_conf 029999790899999999997898599982885555783----68---8878--8999999--889947888-6047---
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLR----TT---MLMG--EGIDFLK--EINVWDFLQ-DIAE--- 68 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r----~~---~l~~--~s~~~L~--~lGl~~~l~-~~~~--- 68 (384)
-||+|||||.+|+.+|..|++.|.+..+++......... ++ .+-| -.++.+. +.-+..+++ ..+.
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~tG 119 (856)
T KOG2844 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLHTG 119 (856)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 55799857850478999999714652478764110366563330103203689603999887889999999986199763
Q ss_pred --CCCCEEEEECCCCCCC-----------CC-CCCCCCHHC-------CCCC-C-C-C-----HHHHCCHHHHHHHHHHH
Q ss_conf --1234189942576554-----------54-443450222-------8753-1-2-0-----11100000000123664
Q gi|254780842|r 69 --PVSSFRLVDITDRLIT-----------AP-DAIFHSSEI-------GLDA-F-G-Y-----NIPNHVLMESFAEKISQ 119 (384)
Q Consensus 69 --~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~-------~~~~-~-g-~-----~i~r~~L~~~L~~~~~~ 119 (384)
+..++.+...+.+... .. ....+.++. +.+. . + | ++.-..+..+|...+++
T Consensus 120 wiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~ 199 (856)
T KOG2844 120 WIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASA 199 (856)
T ss_pred EECCCCEEEECCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 24278168704777899999999764331531055389999886756566674012035887644889999999999985
Q ss_pred CCCCCCCCEEEEEECCCCEE-EEEECCCCCEEEEEEEEEECCCC-CCCCCCCCCCCCCCC
Q ss_conf 79832342056530268717-89830232012111235303754-320003787332222
Q gi|254780842|r 120 DPLIHCFDALANEIQIGEEE-VTILLSTGQQIVGQFLIGSDGRN-SSVRRQMGYGENKWS 177 (384)
Q Consensus 120 ~~~~~~~~~~v~~i~~~~~~-v~v~~~dg~~i~adlvVgADG~~-S~vR~~l~~~~~~~~ 177 (384)
.+.....++-|+++....++ +-|.+.-|. |++..+|.|-|.. +.|-+..+.+..-..
T Consensus 200 ~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~gvkvPL~p 258 (856)
T KOG2844 200 LGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAREVGAMAGVKVPLVP 258 (856)
T ss_pred CCCEEEECCCCCEEEEECCCCCCEECCCCC-EECCEEEECHHHHHHHHHHHCCCCCCCEE
T ss_conf 384798148742577503775543046764-44352785222779876563078546355
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.16 E-value=0.00095 Score=46.41 Aligned_cols=95 Identities=11% Similarity=0.212 Sum_probs=61.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.|+|||||..|+=+|..|++.|.+|+|+|+.+.... .+.+.-.+.
T Consensus 150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~----~~d~~~~~~------------------------------- 194 (438)
T PRK13512 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK----LMDADMNQP------------------------------- 194 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC----CCCHHHHHH-------------------------------
T ss_conf 799989558999999999972990899993573120----049999999-------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
+.+.+.+.+.....+..+..++. + .+++++|+.+.+|+||.|-|+..+
T Consensus 195 ----------------------------~~~~l~~~gv~~~~~~~v~~i~~--~--~v~~~~g~~~~~D~vi~a~G~~Pn 242 (438)
T PRK13512 195 ----------------------------ILDELDKREIPYRLNEEIDAING--N--EITFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred ----------------------------HHHHHHHCCCEEEECCEEEEEEC--C--EEEEEECCEEEECEEEEEEECCCC
T ss_conf ----------------------------99999868999995877999979--7--999932889740789996710027
Q ss_pred CC
Q ss_conf 00
Q gi|254780842|r 165 VR 166 (384)
Q Consensus 165 vR 166 (384)
+.
T Consensus 243 ~~ 244 (438)
T PRK13512 243 SK 244 (438)
T ss_pred HH
T ss_conf 36
No 259
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.06 E-value=0.0011 Score=45.96 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=41.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC----------CCCCE-------EEE----CHHHHHHHHHCCCHHH
Q ss_conf 02999979089999999999789859998288555----------57836-------888----7889999998899478
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL----------QDLRT-------TML----MGEGIDFLKEINVWDF 62 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~----------~~~r~-------~~l----~~~s~~~L~~lGl~~~ 62 (384)
-+|+|||+|++||++|-.|+++ ++|+++|..... .|... +.. =|+-.++++.||+-.+
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~ 87 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK 87 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCEEECCCCCCCEEECCEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 6168972562014457753235-524788606624675310110246873353120488547775029999998099875
No 260
>KOG0042 consensus
Probab=97.05 E-value=0.00023 Score=50.89 Aligned_cols=54 Identities=39% Similarity=0.684 Sum_probs=45.6
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCEEEECHHHHHHHHH
Q ss_conf 0029999790899999999997898599982885555--78368887889999998
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRTTMLMGEGIDFLKE 56 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~~~l~~~s~~~L~~ 56 (384)
.|||+|||||-+|.-+|+--+-+|+++.++|+.++.. ..+..-|-..+++.|++
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLek 122 (680)
T KOG0042 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEK 122 (680)
T ss_pred CCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHH
T ss_conf 55379988886675412120114521477742664577655402544045999999
No 261
>KOG1800 consensus
Probab=97.00 E-value=0.0011 Score=45.81 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=30.9
Q ss_pred EEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCCCCC
Q ss_conf 29999790899999999997--8985999828855557
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAK--KGFLTALVSPRSFLQD 40 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~--~g~~v~iiE~~~~~~~ 40 (384)
-|+|||+||||..+|..|-+ .+++|.|+|+.+.+--
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 59998888368899999972589970675415776653
No 262
>KOG1238 consensus
Probab=96.95 E-value=0.00095 Score=46.40 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.2
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCC
Q ss_conf 700299997908999999999978-9859998288555
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKK-GFLTALVSPRSFL 38 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~-g~~v~iiE~~~~~ 38 (384)
..||.+|||||-||+.+|..|++. .++|+++|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred CCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 57998998987312788876513887349999568997
No 263
>KOG0399 consensus
Probab=96.93 E-value=0.0011 Score=45.98 Aligned_cols=35 Identities=34% Similarity=0.317 Sum_probs=32.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 02999979089999999999789859998288555
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.-|+|||.||+||++|-.|.|.|+.|+|+||++..
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 47999746841466899986447679999715776
No 264
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=96.92 E-value=0.015 Score=37.56 Aligned_cols=154 Identities=22% Similarity=0.312 Sum_probs=87.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCC------CCCCCEEEEC--HHH-----------HHHHHHCCCHH
Q ss_conf 002999979089999999999789--85999828855------5578368887--889-----------99999889947
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKG--FLTALVSPRSF------LQDLRTTMLM--GEG-----------IDFLKEINVWD 61 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~~~------~~~~r~~~l~--~~s-----------~~~L~~lGl~~ 61 (384)
+.||+|||||=|||=+|++.++.+ .+|.|+.|--+ ..+.++-++. ..| -+.|.+=++-+
T Consensus 3 ~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSKVYPMRSHTVaAEGGsAAV~~D~DSld~H~~DTV~GGDWLC~QD~Ve 82 (585)
T TIGR01176 3 QADIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTKDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (585)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEECCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 32367883784468999999840898537898511577641111355311210564124541445345664322021899
Q ss_pred H-----------HHHCCCCCCCE-----EEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 8-----------88604712341-----8994257655454443450222875312011100000000123664798323
Q gi|254780842|r 62 F-----------LQDIAEPVSSF-----RLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHC 125 (384)
Q Consensus 62 ~-----------l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~ 125 (384)
. ++..++|.+.- .+...++- +...++.+.|. -|| .|++.|++..-+.+.+.+
T Consensus 83 ~FV~~ap~E~~QlE~WGCPWSRk~dG~V~VR~FGGM---K~~RTWFAADK----TGF-----H~LHTLFQ~~l~y~~i~R 150 (585)
T TIGR01176 83 YFVAEAPKELVQLEHWGCPWSRKPDGRVNVRRFGGM---KVERTWFAADK----TGF-----HLLHTLFQTSLKYPQIKR 150 (585)
T ss_pred HHHHHCCHHHHHHHCCCCCCCCCCCCCEEEECCCCC---CCCCEEECCCC----CCH-----HHHHHHHHHHCCCCCCEE
T ss_conf 987413345664312788877478985776226881---22100101122----342-----688999986305633100
Q ss_pred CCE-EEEEECCCCEEE----EEECCCCC--EEEEEEEEEECCCCCCCCCC
Q ss_conf 420-565302687178----98302320--12111235303754320003
Q gi|254780842|r 126 FDA-LANEIQIGEEEV----TILLSTGQ--QIVGQFLIGSDGRNSSVRRQ 168 (384)
Q Consensus 126 ~~~-~v~~i~~~~~~v----~v~~~dg~--~i~adlvVgADG~~S~vR~~ 168 (384)
++. -+.++-.++..| -+.+.+|+ +|+|+-||-|.|--.+|=+.
T Consensus 151 ~DE~F~~~lLVDdG~v~GLvAi~~~~G~l~~I~A~aVvlaTGGaGRVy~~ 200 (585)
T TIGR01176 151 YDEYFVVDLLVDDGRVRGLVAIELAEGRLVTIKADAVVLATGGAGRVYRF 200 (585)
T ss_pred HHCEEEEEEEEECCEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCEEE
T ss_conf 01013555575177355578886336706888742789930898730331
No 265
>KOG0685 consensus
Probab=96.85 E-value=0.0018 Score=44.35 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCC
Q ss_conf 2999979089999999999789-85999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~ 37 (384)
-|+|||||+|||++|..|-..| .+++|+|..+.
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dR 56 (498)
T KOG0685 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDR 56 (498)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 4999898567799999999828964899970466
No 266
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.84 E-value=0.0024 Score=43.42 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=43.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-C------CCCEEEECHHHHHHHHHCCCH
Q ss_conf 97002999979089999999999789859998288555-5------783688878899999988994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-Q------DLRTTMLMGEGIDFLKEINVW 60 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~------~~r~~~l~~~s~~~L~~lGl~ 60 (384)
|| |+|+|||=.|..+|-.|...|++|+++|+.+.. . |..++.=.+.....|++.|+.
T Consensus 1 M~---IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~ 64 (455)
T PRK09496 1 MK---IIILGAGQVGGTLAERLVGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAE 64 (455)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCC
T ss_conf 97---99999888999999999868997999989999999988625868999668999999965998
No 267
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.82 E-value=0.0021 Score=43.94 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=31.2
Q ss_pred EEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCCC
Q ss_conf 029999790899999999997-898599982885555
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAK-KGFLTALVSPRSFLQ 39 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~-~g~~v~iiE~~~~~~ 39 (384)
+-|+|||+||||..+|..|-+ .+++|.++||-|.+-
T Consensus 40 lRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~Pf 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 5799988883899999999638997798882689887
No 268
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.79 E-value=0.0023 Score=43.57 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCEEEECHHHHH--HHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 97002999979089999999999789-85999828855557836888788999--9998899478886047123418994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSFLQDLRTTMLMGEGID--FLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~~~~~r~~~l~~~s~~--~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|+-||++.||-||+-|.+|++|...+ ++++.+||++...---+..|...++. +|+. +-....|.+.+.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkD------LVTl~~PTs~ySFLN 76 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKD------LVTLVDPTSPYSFLN 76 (436)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH------HCCCCCCCCCHHHHH
T ss_conf 76402688704832789998735025752578734788876787555786444500563------255358998307999
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCC--CEEEE--EECCCCCEEEEE
Q ss_conf 25765545444345022287531201110000000012366479832342056530268--71789--830232012111
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIG--EEEVT--ILLSTGQQIVGQ 153 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~--~~~v~--v~~~dg~~i~ad 153 (384)
.-. ..+....| +..+. +.++|....+-+.=.+...+.+ .++..|..|..- +..+. +...+++.++|+
T Consensus 77 YL~--~h~RLy~F----l~~e~--f~i~R~Ey~dY~~Waa~~l~~~-rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar 147 (436)
T COG3486 77 YLH--EHGRLYEF----LNYET--FHIPRREYNDYCQWAASQLPSL-RFGEEVTDISSLDGDAVVRLFVVTANGTVYRAR 147 (436)
T ss_pred HHH--HCCHHHHH----HHHHC--CCCCHHHHHHHHHHHHHHCCCC-CCCCEECCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 998--70657655----42002--3555888999999998408723-368701221024776305899982788478860
Q ss_pred EEEEECCCCCCCC
Q ss_conf 2353037543200
Q gi|254780842|r 154 FLIGSDGRNSSVR 166 (384)
Q Consensus 154 lvVgADG~~S~vR 166 (384)
-||..-|....+=
T Consensus 148 ~lVlg~G~~P~IP 160 (436)
T COG3486 148 NLVLGVGTQPYIP 160 (436)
T ss_pred EEEECCCCCCCCC
T ss_conf 3798259976787
No 269
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.71 E-value=0.017 Score=37.28 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=13.6
Q ss_pred CCCEEEEEEEEEECCCCCCCCC
Q ss_conf 3201211123530375432000
Q gi|254780842|r 146 TGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 146 dg~~i~adlvVgADG~~S~vR~ 167 (384)
+.+++++|.++.|-|+...+..
T Consensus 418 ~~k~leaD~vLVAvGR~PnT~~ 439 (673)
T PTZ00153 418 DIKELHVDSCLVATGRKPNTNN 439 (673)
T ss_pred CCCEEECCEEEECCCCCCCCCC
T ss_conf 6516871899985265027788
No 270
>pfam00996 GDI GDP dissociation inhibitor.
Probab=96.71 E-value=0.0035 Score=42.23 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=35.4
Q ss_pred CC-EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 97-0029999790899999999997898599982885555
Q gi|254780842|r 1 MN-HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 1 M~-~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
|. +|||+|+|-|+.=+.+|.+|++.|.+|+.+|+++...
T Consensus 1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYG 40 (439)
T pfam00996 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYG 40 (439)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 9985029997998799999999973699899977998778
No 271
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0049 Score=41.21 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=43.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-----C---CCCEEEECHHHHHHHHHCCCHH
Q ss_conf 999979089999999999789859998288555-----5---7836888788999999889947
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-----Q---DLRTTMLMGEGIDFLKEINVWD 61 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-----~---~~r~~~l~~~s~~~L~~lGl~~ 61 (384)
|+|+|+|..|.++|..|.+.|+.|+++|+.+.. . +.+++.........|+++|+.+
T Consensus 3 iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 3 IIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCC
T ss_conf 9998985788999999987899089997688999986320004499992688989998679863
No 272
>KOG3851 consensus
Probab=96.60 E-value=0.0055 Score=40.80 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=60.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHC-C-CEEEEEECCCC--CCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 700299997908999999999978-9-85999828855--5578368887889999998899478886047123418994
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKK-G-FLTALVSPRSF--LQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~-g-~~v~iiE~~~~--~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|||.|+|||||-+|+..|.-+.++ | =+|.|+|+... .++. ..|...++.-|+. .
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPg--fTLvGgGl~~l~~---------s----------- 95 (446)
T KOG3851 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPG--FTLVGGGLKSLDS---------S----------- 95 (446)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC--EEEECCCHHHHHH---------C-----------
T ss_conf 03489998678630578999986568985577552153245765--1786430444655---------3-----------
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEE
Q ss_conf 25765545444345022287531201110000000012366479832342056530268717898302320121112353
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIG 157 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVg 157 (384)
|+.. .+-+++ ...+...+|.+.+.+. -+|.+++|++|+.|++|.
T Consensus 96 ----------------------------rr~~----a~liP~--~a~wi~ekv~~f~P~~--N~v~t~gg~eIsYdylvi 139 (446)
T KOG3851 96 ----------------------------RRKQ----ASLIPK--GATWIKEKVKEFNPDK--NTVVTRGGEEISYDYLVI 139 (446)
T ss_pred ----------------------------CCCC----CCCCCC--CCHHHHHHHHHCCCCC--CEEECCCCCEEEEEEEEE
T ss_conf ----------------------------6741----111567--7589998887508776--747705996776656766
Q ss_pred ECCCCCCCCCC
Q ss_conf 03754320003
Q gi|254780842|r 158 SDGRNSSVRRQ 168 (384)
Q Consensus 158 ADG~~S~vR~~ 168 (384)
|-|+.-.--+.
T Consensus 140 A~Giql~y~~I 150 (446)
T KOG3851 140 AMGIQLDYGKI 150 (446)
T ss_pred EEECEECCCHH
T ss_conf 54024440200
No 273
>KOG2404 consensus
Probab=96.56 E-value=0.0098 Score=38.98 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=74.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCE-EEECHHHHHHHHHCCCHHHHHH-----------CCCC-
Q ss_conf 29999790899999999997898599982885555--7836-8887889999998899478886-----------0471-
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ--DLRT-TMLMGEGIDFLKEINVWDFLQD-----------IAEP- 69 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~--~~r~-~~l~~~s~~~L~~lGl~~~l~~-----------~~~~- 69 (384)
.|+|||+|+|||++++-+-..|-.|+++|+..... ...+ ..|+....+.-+.+++.|..+- .+.|
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 07998774032356777874487599982467767752010257677761456531656676777640243203478689
Q ss_pred -CCCEE-----EEECCCC-----------CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHH----HHCCCC--CCC
Q ss_conf -23418-----9942576-----------554544434502228753120111000000001236----647983--234
Q gi|254780842|r 70 -VSSFR-----LVDITDR-----------LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKI----SQDPLI--HCF 126 (384)
Q Consensus 70 -~~~~~-----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~----~~~~~~--~~~ 126 (384)
+.... .+++-.. ..-.+.... ....+..+-|+ .+...|.+++ .+++.. ...
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRT-Hr~s~plppgf-----ei~~~L~~~l~k~as~~pe~~ki~~ 164 (477)
T KOG2404 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRT-HRSSGPLPPGF-----EIVKALSTRLKKKASENPELVKILL 164 (477)
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCC-CCCCCCCCCCH-----HHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99998736887899986330626689987258787753-45689999960-----8999999998876531807773231
Q ss_pred CEEEEEECCCCEEEE---EECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 205653026871789---8302320--12111235303754320
Q gi|254780842|r 127 DALANEIQIGEEEVT---ILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 127 ~~~v~~i~~~~~~v~---v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
+++++++..+++.|+ ..-.+|+ .+.++-||-|.|-.+.-
T Consensus 165 nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ys 208 (477)
T KOG2404 165 NSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYS 208 (477)
T ss_pred CCEEEEEECCCCEEEEEEEECCCCCCCCEECCCEEEECCCCCCC
T ss_conf 36245644278807779997578972501047369952776757
No 274
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=96.55 E-value=0.0036 Score=42.14 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=43.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCEEEE----------CHHHHHHHHHCCCHHHHHH
Q ss_conf 99997908999999999978985999828855557-------836888----------7889999998899478886
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD-------LRTTML----------MGEGIDFLKEINVWDFLQD 65 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~-------~r~~~l----------~~~s~~~L~~lGl~~~l~~ 65 (384)
|+|||+|++|+++|..|...|++|.|+|.+++..- ..+-.+ -.+-.+++++.|..+.+..
T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GGkvGs~~d~~Gnh~emGlhvff~~y~~lf~l~~kvGa~~~l~~ 78 (474)
T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGGKVGSWVDKDGNHIEMGLHVFFGCYANLFKLLKKVGALDNLLL 78 (474)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 57872567789999999738972788524332375200015178887630588889989999999985141555443
No 275
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0019 Score=44.22 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=68.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC------CCCEEEECHHH---HHHHHHCCCHHH-HHHCCCCC
Q ss_conf 970029999790899999999997898599982885555------78368887889---999998899478-88604712
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ------DLRTTMLMGEG---IDFLKEINVWDF-LQDIAEPV 70 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~------~~r~~~l~~~s---~~~L~~lGl~~~-l~~~~~~~ 70 (384)
|.+-.|.|||||+||.-+|.-++++|++|.++|-++... +.-+.-+-.|| -..-..-|+.+. .+..+.-+
T Consensus 1 ~~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgSli 80 (439)
T COG1206 1 MMQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGSLI 80 (439)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98772589756544519999998769837999704566897544565243021255464034444578899999721178
Q ss_pred CCEEEEECCCCCCCCCCCCCCCHHCCCCCC-CCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 341899425765545444345022287531-201110000000012366479832342056530268717898
Q gi|254780842|r 71 SSFRLVDITDRLITAPDAIFHSSEIGLDAF-GYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTI 142 (384)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v 142 (384)
+ ..+.....+.- ..-|.|..+.+.+-+.+.+++++.+...+++++-. ++++|
T Consensus 81 -----i-------------~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~iP~--dg~~v 133 (439)
T COG1206 81 -----I-------------EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEIPP--DGITV 133 (439)
T ss_pred -----H-------------HHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCCEE
T ss_conf -----6-------------64154068887604661767789999998539977987110146899--88579
No 276
>KOG0404 consensus
Probab=96.50 E-value=0.017 Score=37.14 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=79.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 02999979089999999999789859998288555578368887889999998899478886047123418994257655
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLI 83 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~ 83 (384)
-.|+|||.||++-++|+.++|..++-+++|---... +.|.+ +.....+-..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~------i~pGG-----------------------QLtTTT~veN 59 (322)
T KOG0404 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG------IAPGG-----------------------QLTTTTDVEN 59 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCC------CCCCC-----------------------EEEEEECCCC
T ss_conf 038998358067778999765026756881111168------68886-----------------------3456520134
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC
Q ss_conf 45444345022287531201110000000012366479832342056530268717898302320121112353037543
Q gi|254780842|r 84 TAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNS 163 (384)
Q Consensus 84 ~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S 163 (384)
.+.|.--+.-.+|...+++...+-+.. ++...|++++.......+.+ |.+.+++|-||-|.|+..
T Consensus 60 -------------fPGFPdgi~G~~l~d~mrkqs~r~Gt~-i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404 60 -------------FPGFPDGITGPELMDKMRKQSERFGTE-IITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred -------------CCCCCCCCCCHHHHHHHHHHHHHHCCE-EEEEEHHHCCCCCCCEEEEE-CCCCEEEEEEEEECCCCE
T ss_conf -------------899975456688999999888751646-54100222223689769884-377245306999216301
Q ss_pred CCCCCCCCCCCCCC-CCEEEEEE
Q ss_conf 20003787332222-43047876
Q gi|254780842|r 164 SVRRQMGYGENKWS-YPQKALVL 185 (384)
Q Consensus 164 ~vR~~l~~~~~~~~-y~~~~l~~ 185 (384)
+.+.++-++.. |.|..+.+
T Consensus 125 ---kRl~~pg~ge~~fWqrGiSa 144 (322)
T KOG0404 125 ---KRLHLPGEGEGEFWQRGISA 144 (322)
T ss_pred ---EEEECCCCCCCHHHHCCCCH
T ss_conf ---24654787752577636405
No 277
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.48 E-value=0.013 Score=38.18 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC--CCCCCCCCCCC
Q ss_conf 012366479832342056530268717898302320121112353037543--20003787332
Q gi|254780842|r 113 FAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNS--SVRRQMGYGEN 174 (384)
Q Consensus 113 L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S--~vR~~l~~~~~ 174 (384)
|...+.+.+.....++...++...+.-..+.++||..+.+|+||-|+|++. .+.+..|+...
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavn 256 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVN 256 (793)
T ss_pred HHHHHHHHCCEEECCCHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCCCCC
T ss_conf 9999886060453132024564576403676056873442069996230466176786176658
No 278
>KOG4254 consensus
Probab=96.42 E-value=0.0024 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=32.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 0029999790899999999997898599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.||++|||+|.-||++|..|+|.|.+|+++|++.
T Consensus 14 ~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEE
T ss_conf 5466996588663447899975386069999863
No 279
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=96.40 E-value=0.0057 Score=40.70 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|||.|=.||.+|..|+++|++|..+|..+
T Consensus 1 Mk---I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~ 33 (185)
T pfam03721 1 MR---IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33 (185)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 97---9998978748999999994899399997998
No 280
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.38 E-value=0.0067 Score=40.20 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=69.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.|+|||||..|+-+|..|++.|.+|+|+|+.+.+-. | .+.+..-
T Consensus 146 ~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~-r--~~~~~~~--------------------------------- 189 (400)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-R--NAPPPVQ--------------------------------- 189 (400)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC-C--CCCHHHH---------------------------------
T ss_conf 399988558999999999975994899953463410-0--2698999---------------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 54443450222875312011100000000123664798323420565302687178983023201211123530375432
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSS 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~ 164 (384)
+.+.+...+.++..+.+..+..+. +.+.+.+.++||+++.||+||.+-|+..+
T Consensus 190 --------------------------~~l~~~~~~~GV~~~~~~~v~~~~-~g~~~~v~l~~G~~l~aD~VivaiGv~Pn 242 (400)
T PRK09754 190 --------------------------RYLLQRHQQAGVRILLNNAIEHVV-DGEKVELTLQSGETLQADVVIYGIGISAN 242 (400)
T ss_pred --------------------------HHHHHHHHHCCCEEEECCEEEEEE-CCCEEEEEECCCCEEECCEEEECCCCCCC
T ss_conf --------------------------999999997898999587589997-89779999868999985899989767537
Q ss_pred CC--CCCCCC
Q ss_conf 00--037873
Q gi|254780842|r 165 VR--RQMGYG 172 (384)
Q Consensus 165 vR--~~l~~~ 172 (384)
+. +..|+.
T Consensus 243 t~la~~agL~ 252 (400)
T PRK09754 243 DQLAREANLD 252 (400)
T ss_pred HHHHHHCCCC
T ss_conf 5899877997
No 281
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.34 E-value=0.057 Score=33.37 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=17.5
Q ss_pred HHCCCCEECCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 537942101100113---844565321121238999999852
Q gi|254780842|r 274 GKKRVVLVGEAAHAL---PPICGQGLNLSMRDVIILLNLFQS 312 (384)
Q Consensus 274 ~~~rv~liGDAAH~~---~P~~GqG~n~ai~Da~~L~~~l~~ 312 (384)
..++|..+||+|... .|-+|| .|.+-|..+++.|.+
T Consensus 270 ~~~~VfAiGD~a~~~~~p~pk~g~---~A~~qa~~~a~Ni~~ 308 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGV---YAVRQAPILAANLRA 308 (364)
T ss_pred CCCCEEEECCEECCCCCCCCCCCH---HHHHHHHHHHHHHHH
T ss_conf 999999971543688999997438---899999999999999
No 282
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=96.28 E-value=0.013 Score=37.95 Aligned_cols=62 Identities=34% Similarity=0.323 Sum_probs=48.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC-------C--C---CEE-----EECHHHHHHHHHCCCHHHHHHCC
Q ss_conf 9999790899999999997898599982885555-------7--8---368-----88788999999889947888604
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ-------D--L---RTT-----MLMGEGIDFLKEINVWDFLQDIA 67 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~-------~--~---r~~-----~l~~~s~~~L~~lGl~~~l~~~~ 67 (384)
|+|.|+|++||++|..|...|+.-+|+|++.... | . .++ .--|+-.++|++|++.+.+.-..
T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~dGdW~etGlh~ffGayPn~~~l~~el~i~drlqWk~ 80 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNILQLLKELNIEDRLQWKE 80 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 5772274556778878763589626863210035502332247886113104554314578999998615022222211
No 283
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.27 E-value=0.0044 Score=41.53 Aligned_cols=36 Identities=44% Similarity=0.635 Sum_probs=31.4
Q ss_pred EEEEECCCHHHHHHHHHHH----HCCCEEEEEECCCCCCC
Q ss_conf 2999979089999999999----78985999828855557
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAA----KKGFLTALVSPRSFLQD 40 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~----~~g~~v~iiE~~~~~~~ 40 (384)
||+|||||.+|+=+|..-+ +.|++|+|+||...-+.
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~~eRS 40 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAAVERS 40 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 9478717855202789999874068837999611465422
No 284
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.26 E-value=0.0085 Score=39.40 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=32.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 97002999979089999999999789859998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|++ |.|||+|.-|...|..++++|++|.++|.++..
T Consensus 2 i~~--VaViGaG~mG~giA~~~a~~G~~V~l~D~~~~~ 37 (308)
T PRK06129 2 MGS--IAIVGAGLIGRAWAIVFARAGHRVRLWDADPAA 37 (308)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 987--999777899999999998589938999898899
No 285
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.018 Score=37.00 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|+|+|.|.+|+++|..|.+.|.+|.++|..+
T Consensus 16 ~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 47 (481)
T PRK01438 16 RVVVAGLGVSGFPAADALHELGASVTVVADGD 47 (481)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999575889999999996799899997998
No 286
>KOG1336 consensus
Probab=96.20 E-value=0.04 Score=34.46 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=26.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 029999790899999999997898--599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~ 36 (384)
-.|+|||+|++|..++..+.+.|. +.+++-+..
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~ 109 (478)
T KOG1336 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY 109 (478)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 44999768820335576677528876607874233
No 287
>PRK06116 glutathione reductase; Validated
Probab=96.17 E-value=0.013 Score=38.08 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=64.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCCCCCC
Q ss_conf 29999790899999999997898599982885555783688878899999988994788860471234189942576554
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLIT 84 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (384)
.++|||||..|+-+|..|++.|.+|+++|+.+.. |..++
T Consensus 169 ~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~---------------l~~~D-------------------------- 207 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAP---------------LRGFD-------------------------- 207 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCH---------------HHHCC--------------------------
T ss_conf 7999999666999999999609848999944840---------------12048--------------------------
Q ss_pred CCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-EEEEECCCCCEEEEEEEEEECCCCC
Q ss_conf 544434502228753120111000000001236647983234205653026871-7898302320121112353037543
Q gi|254780842|r 85 APDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEE-EVTILLSTGQQIVGQFLIGSDGRNS 163 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~v~v~~~dg~~i~adlvVgADG~~S 163 (384)
.++.+.|.+.+.+.+...+++..+..++.+++ .+.+++++|+++++|.|+.|-|+..
T Consensus 208 ----------------------~~~~~~l~~~l~~~gi~i~~~~~v~~v~~~~~g~~~v~~~~g~~~~~d~vl~a~Gr~P 265 (450)
T PRK06116 208 ----------------------PDIRETLVEEMEKKGIQLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred ----------------------HHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCC
T ss_conf ----------------------7777999999986497896398899999859962899987997999708999178420
Q ss_pred CCCC
Q ss_conf 2000
Q gi|254780842|r 164 SVRR 167 (384)
Q Consensus 164 ~vR~ 167 (384)
++-.
T Consensus 266 nt~~ 269 (450)
T PRK06116 266 NTDN 269 (450)
T ss_pred CCCC
T ss_conf 5565
No 288
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.17 E-value=0.0098 Score=38.98 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|.|||||.-|...|..++++|++|.++|+++.
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDE 37 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 899989788999999999957993899979989
No 289
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.16 E-value=0.0083 Score=39.49 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=31.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |+|+|+|-.|+.+|..|++.|.+|+++.|.+.
T Consensus 1 Mk---I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~ 34 (307)
T PRK06522 1 MK---IAILGAGAIGGLFGARLAQAGHDVTLVARGAT 34 (307)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 98---99999149999999999848998899978888
No 290
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.014 Score=37.93 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=29.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|+|.|.+|+++|..|.+.|.+|.+.|.++
T Consensus 9 ~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~ 40 (501)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGCRLRVADTRE 40 (501)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 39998336889999999997898499998999
No 291
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.08 E-value=0.0065 Score=40.29 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=42.0
Q ss_pred HHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 1100000000123664798323420565302687178983023201211123530375432000
Q gi|254780842|r 104 IPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 104 i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgADG~~S~vR~ 167 (384)
++...+.--+.+-++..+++.+.-.+|++|+.+...| +++++..+..|+||.|-|.....=.
T Consensus 54 l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V--~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 54 LSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKV--TLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred CCHHHEECCHHHHHCCCCCEEEEEEEEEEECCCCCEE--EECCCCCCCCCEEEEECCCCCCCCC
T ss_conf 7756521308998423574489997899971567989--9578870236389994587667689
No 292
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.06 E-value=0.012 Score=38.25 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|||||.-|...|..++++|++|+++|.++.
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~ 37 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAFKGFDVTIYDISEE 37 (288)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 899989788999999999957992899989889
No 293
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.04 E-value=0.013 Score=38.11 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|||+|.-|..-|..++.+|++|.++|+.+.
T Consensus 5 VAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~pe 36 (489)
T PRK07531 5 AACIGGGVIGGGWAARFLLNGWDVAVFDPHPE 36 (489)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99987188689999999957996999948878
No 294
>PTZ00318 NADH dehydrogenase; Provisional
Probab=96.04 E-value=0.0093 Score=39.12 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|-+-.|+|+|||-+|+.+|..|.+...+|+|+++++.
T Consensus 8 ~~KprVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny 44 (514)
T PTZ00318 8 LLKPNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH 44 (514)
T ss_pred CCCCEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 7888589999769999999973868982899999998
No 295
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.01 E-value=0.0095 Score=39.07 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHCCCCCCCEEEEE
Q ss_conf 970029999790899999999997898599982885555783688878---89999998899478886047123418994
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMG---EGIDFLKEINVWDFLQDIAEPVSSFRLVD 77 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~---~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 77 (384)
|++|||+||||||+|+++|+.+++.|.+|+|+|+.+.. ++..+.. ++..+++........+.. + ..
T Consensus 4 m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~---GG~Cln~GCIPsK~L~~~a~~~~~~~~~--~-----~~- 72 (465)
T PRK05249 4 MYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV---GGGCTHWGTIPSKALREAVLRIIGFNQN--P-----LY- 72 (465)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---CCEEEEECCHHHHHHHHHHHHHHHHHHC--C-----CC-
T ss_conf 77789899997789999999999789929999769997---6653444617679999999999998755--4-----24-
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCC--CEEEEEEE
Q ss_conf 2576554544434502228753120111000000001236647983234205653026871789830232--01211123
Q gi|254780842|r 78 ITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTG--QQIVGQFL 155 (384)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg--~~i~adlv 155 (384)
........ ++..+.-. ..-.++. .+.+.+.+.+.+++ +.++.....-+ +++.+.+...|| ++++++-+
T Consensus 73 --~~~~~~~~--~~~~~~~~-~~~~~v~--~~~~~~~~~l~~~g-v~~i~G~a~f~--~~~~v~V~~~dg~~~~i~a~~i 142 (465)
T PRK05249 73 --RDYRVKLR--ITFADLLA-RADRVIN--KQVEVRRGFYARNR-VEVIQGRASFV--DPHTVEVECPDGSVETLTAEKI 142 (465)
T ss_pred --CCCCCCCC--CCHHHHHH-HHHHHHH--HHHHHHHHHHHHCC-CEEEEEEEEEC--CCCCEEEECCCCCEEEEEEEEE
T ss_conf --65566686--28999999-9999998--88789999998689-78998478972--7984044348996289984279
Q ss_pred EEECCCCCCC
Q ss_conf 5303754320
Q gi|254780842|r 156 IGSDGRNSSV 165 (384)
Q Consensus 156 VgADG~~S~v 165 (384)
|-|-|.+...
T Consensus 143 IIATGs~p~~ 152 (465)
T PRK05249 143 VIATGSRPYR 152 (465)
T ss_pred EEECCCCCCC
T ss_conf 9953752456
No 296
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=95.96 E-value=0.013 Score=37.97 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|.|||||.-|...|..++++|++|.++|+++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 33 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISEE 33 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 89999788999999999967993999979989
No 297
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.94 E-value=0.012 Score=38.20 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |+|||.|=.||.+|..|+..|++|+.+|..+.
T Consensus 1 Mk---I~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~~ 34 (411)
T TIGR03026 1 MK---IAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 97---99989787799999999948994899989999
No 298
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.93 E-value=0.014 Score=37.78 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=30.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|||||.-|...|..++++|++|.++|+.+.
T Consensus 7 ~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~~ 39 (310)
T PRK06130 7 NLAIIGAGAMGSGIAALFASKGLDVVLIDPMPG 39 (310)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 898978779999999999858998899979999
No 299
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.88 E-value=0.014 Score=37.90 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 9999790899999999997898599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|+|+|+|-.|+..|..|++.|++|+++.+..
T Consensus 5 I~IiGaGAvG~~~a~~L~~aG~~V~lv~r~~ 35 (341)
T PRK08229 5 ICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 9998967999999999985899879995678
No 300
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.85 E-value=0.016 Score=37.36 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
||+ |+|||||.-|.-.|..++++|++|.++|.++.
T Consensus 2 Ikk--V~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~e 36 (289)
T PRK09260 2 MEK--IVVVGAGVMGRGIAYVFASSGFQTTLVDISQE 36 (289)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 676--99979688789999999968998899979989
No 301
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.022 Score=36.46 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=30.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|+|-|.+|.++|..|.+.|.+|.++|+++.
T Consensus 16 kv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~~ 48 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 699997878899999999978897999989884
No 302
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.83 E-value=0.016 Score=37.50 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||+ |+|+|.|.+|.++|..|.+.|..|.++|.+.
T Consensus 3 ~Kk--vlV~GlG~SG~s~a~~L~~~g~~v~~~D~~~ 36 (418)
T PRK00683 3 LQR--VVVLGLGVTGKSVARFLAQKGVYVIGVDNSL 36 (418)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCEEEEECCCH
T ss_conf 866--9998088879999999997829899982981
No 303
>PRK09117 consensus
Probab=95.80 E-value=0.018 Score=37.05 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
||+ |+|||||.-|...|..++++|++|.++|+.+.
T Consensus 2 I~~--VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 36 (282)
T PRK09117 2 IQT--VGIIGAGTMGNGIAQACAVAGLDVVMVDISDA 36 (282)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 177--99989779999999999967996899989889
No 304
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=95.74 E-value=0.0093 Score=39.12 Aligned_cols=30 Identities=43% Similarity=0.645 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 999979089999999999789859998288
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
|+|||+|+||+++|+.|+..|.+|..|-=.
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~~~ 30 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFSYQ 30 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 968556534789999998648851254405
No 305
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.021 Score=36.53 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=30.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|||||.-|...|..++++|++|.++|.++.
T Consensus 6 ~VaViGAG~MG~giA~~~a~~G~~V~l~D~~~e 38 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 899989669999999999967996899979889
No 306
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.69 E-value=0.022 Score=36.40 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|.|||||.-|...|..++++|++|.++|..+.
T Consensus 5 V~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~~ 36 (284)
T PRK07819 5 VGVVGAGQMGSGIAEVCARAGVDVLVFETTEE 36 (284)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99989778999999999957990899979889
No 307
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.61 E-value=0.018 Score=37.04 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|+|+|-.|...|-.|++.|.+|+++.+.+
T Consensus 3 Mk---I~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~ 35 (305)
T PRK05708 3 MT---WHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEEECH
T ss_conf 88---9998823999999999984899739999478
No 308
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.54 E-value=0.025 Score=35.93 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=29.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|||.|=.||.+|..|+..|++|+-+|..+
T Consensus 5 kI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 79998868778999999996889489998999
No 309
>KOG2960 consensus
Probab=95.50 E-value=0.0029 Score=42.80 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=29.4
Q ss_pred EEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCCC
Q ss_conf 29999790899999999997--89859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAK--KGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~--~g~~v~iiE~~~~~ 38 (384)
||+|||+|-+||++|...++ -.++|.|+|.+-.+
T Consensus 78 DvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960 78 DVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred CEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECC
T ss_conf 569987786654146663036998469999700369
No 310
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.48 E-value=0.14 Score=30.47 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE-EECC---CCC--EEEEEEEEEECCCC-CCCCCCCCCCCCC
Q ss_conf 000001236647983234205653026871789-8302---320--12111235303754-3200037873322
Q gi|254780842|r 109 LMESFAEKISQDPLIHCFDALANEIQIGEEEVT-ILLS---TGQ--QIVGQFLIGSDGRN-SSVRRQMGYGENK 175 (384)
Q Consensus 109 L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~-v~~~---dg~--~i~adlvVgADG~~-S~vR~~l~~~~~~ 175 (384)
|.-.+...+.+++......++|+++..+++.+. +.+. +|+ .++|++||-|-|.. ..++++.+.+..-
T Consensus 130 l~~a~a~~A~~~Ga~i~~~~~V~~i~~~~g~v~gv~v~d~~tg~~~~i~ak~VVNAaG~wad~i~~mag~~~~i 203 (516)
T TIGR03377 130 LVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLDIRM 203 (516)
T ss_pred HHHHHHHHHHHCCHHHHCCCEEEEEEEECCEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCCEE
T ss_conf 99999999997365644073688999889999999999868897899995389976773568898746998346
No 311
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.42 E-value=0.025 Score=36.04 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|+|+|-.|+.+|..|++.|++|+++-+..
T Consensus 1 Mk---I~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~ 33 (306)
T PRK12921 1 MK---IAVVGAGAVGGTFGARLLEAGRDVTFLGRSA 33 (306)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 98---9999924999999999983699889997000
No 312
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.035 Score=34.94 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=30.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-|+|+|.|.+|+++|..|.+.|.+|.+.|.++.
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~~ 51 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGCDVVVADDNET 51 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 889992278899999999978997999989987
No 313
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.038 Score=34.67 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+=--|.|||||.-|...|..++++|++|.++|.++.
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~ 37 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 9958899988768899999999958998899989989
No 314
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.24 E-value=0.04 Score=34.44 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=36.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 2999979089999999999789859998288555578368887889999998899
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINV 59 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl 59 (384)
.|+|||+|.-|..-|..++.+|++|.++|+.+...+ +....-.+.+..|++.|+
T Consensus 9 ~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~~a~~-~~~~~i~~~~~~l~~~~~ 62 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEA-ALRANVANAWPALERQGL 62 (321)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 799988878889999999947985999969888999-999999999999986689
No 315
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.034 Score=34.99 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |.|+|.|=+||+.|..|++.|++|+.+|..+
T Consensus 1 Mk---I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MK---ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CC---EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 91---5898885568878999987098489995788
No 316
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.047 Score=33.99 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=30.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|+|.|.+|+++|..|.+.|.+|.+.|.++.
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~~ 43 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 43 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 899997789999999999988698999848866
No 317
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.04 Score=34.45 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=34.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 00299997908999999999978985999828855557
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD 40 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~ 40 (384)
.|||+|.|-|+.-+.++.+|+..|.+|+.+|+++...+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 00189962668999998886226751799707876675
No 318
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=95.18 E-value=0.041 Score=34.44 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=30.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|+|||--|.++|..|++.|++|.++.+++.
T Consensus 3 I~IiGaG~wGtAla~~la~n~~~V~l~~r~~~ 34 (159)
T pfam01210 3 IAVLGAGSWGTALAKVLARNGHEVRLWGRDEE 34 (159)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECCH
T ss_conf 99999699999999999987998999990436
No 319
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.18 E-value=0.034 Score=35.03 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|||-|+.|-++|+.|++.|++|.-+++++
T Consensus 2 mk---I~IiGlGLIGgSla~al~~~~~~V~g~d~~~ 34 (280)
T PRK07417 2 MN---IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 34 (280)
T ss_pred CE---EEEEECCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 78---9999318579999999996899799997999
No 320
>PRK07660 consensus
Probab=95.14 E-value=0.044 Score=34.16 Aligned_cols=37 Identities=24% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+==.|+|||||.-|...|..++++|++|+++|.++.
T Consensus 1 M~Ik~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~~ 37 (283)
T PRK07660 1 MGVQKIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQE 37 (283)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 9978899989698999999999966981899979889
No 321
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.06 E-value=0.045 Score=34.10 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=10.1
Q ss_pred HHCCCCEECCCCC
Q ss_conf 5379421011001
Q gi|254780842|r 274 GKKRVVLVGEAAH 286 (384)
Q Consensus 274 ~~~rv~liGDAAH 286 (384)
..++|..+||.|.
T Consensus 262 s~~~VyA~GDva~ 274 (277)
T pfam07992 262 SVPGIYAAGDVAE 274 (277)
T ss_pred CCCCEEEEEECCC
T ss_conf 9999999886889
No 322
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=95.05 E-value=0.046 Score=34.00 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=37.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC-C---C--CCEEEECHHHHHHHHHCCC
Q ss_conf 999979089999999999789859998288555-5---7--8368887889999998899
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-Q---D--LRTTMLMGEGIDFLKEINV 59 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~-~---~--~r~~~l~~~s~~~L~~lGl 59 (384)
|+|+|.|-.|..+|..|.+.| +|+++|+.+.. . + ..++.-.+.....|+++|+
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 59 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGI 59 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCC
T ss_conf 999878889999999998089-99999998799877886698699995688667876192
No 323
>KOG1346 consensus
Probab=94.99 E-value=0.11 Score=31.24 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=63.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHH--HCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 7002999979089999999999--78985999828855557836888788999999889947888604712341899425
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAA--KKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDIT 79 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~--~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 79 (384)
+|...+|+|+|.+..+.+.+.. ..+-.|+++...+..+-.|- |-+ ++ +|=.-. ..+...+++-.+.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRP----PLS----KE--LW~~~d--pn~~k~lrfkqws 244 (659)
T KOG1346 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRP----PLS----KE--LWWYGD--PNSAKKLRFKQWS 244 (659)
T ss_pred CCCCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCC----CCC----HH--CEECCC--CCHHHHEEECCCC
T ss_conf 45855677377344320456656788735886036767765689----744----21--135699--9715404301047
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76554544434502228753120111000000001236647983234205653026871789830232012111235303
Q gi|254780842|r 80 DRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSD 159 (384)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~i~adlvVgAD 159 (384)
++.- ++.| ..+ ++.|+-.+|-++. +-++....+.+++.+...+.. |++.||.+|..|-...|.
T Consensus 245 GkeR---siff-----epd--~FfvspeDLp~~~-----nGGvAvl~G~kvvkid~~d~~--V~LnDG~~I~YdkcLIAT 307 (659)
T KOG1346 245 GKER---SIFF-----EPD--GFFVSPEDLPKAV-----NGGVAVLRGRKVVKIDEEDKK--VILNDGTTIGYDKCLIAT 307 (659)
T ss_pred CCCC---EEEE-----CCC--CCEECHHHCCCCC-----CCCEEEEECCCEEEEECCCCE--EEECCCCEEEHHHEEEEC
T ss_conf 8643---1575-----588--5044857774002-----685689734504786100076--882278572121046532
Q ss_pred CCCCC
Q ss_conf 75432
Q gi|254780842|r 160 GRNSS 164 (384)
Q Consensus 160 G~~S~ 164 (384)
|....
T Consensus 308 G~~Pk 312 (659)
T KOG1346 308 GVRPK 312 (659)
T ss_pred CCCCC
T ss_conf 77766
No 324
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=94.94 E-value=0.041 Score=34.40 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 9999790899999999997898599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|+|+|+|-.|+.+|..|++.|.+|+++.|.+
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999668999999999997799289997563
No 325
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=94.91 E-value=0.046 Score=34.01 Aligned_cols=52 Identities=35% Similarity=0.392 Sum_probs=39.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCEE--EECH-HHHHHHHHCCC
Q ss_conf 02999979089999999999789---859998288555578368--8878-89999998899
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKG---FLTALVSPRSFLQDLRTT--MLMG-EGIDFLKEINV 59 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g---~~v~iiE~~~~~~~~r~~--~l~~-~s~~~L~~lGl 59 (384)
||++|||+|=||.++|+.-.+.| -+|+++|+-+. +++ -+-+ +|..+|...-+
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~----GGTCVNVGCVPSK~llraa~~ 58 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPL----GGTCVNVGCVPSKILLRAAEV 58 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCC----CCEEEEECCCHHHHHHHHHHH
T ss_conf 9189982768999999999854887159999637897----761585232745899999988
No 326
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=94.84 E-value=0.033 Score=35.11 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=72.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC--CCC-CC---CEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEE
Q ss_conf 0029999790899999999997898599982885--555-78---36888788999999889947888604712341899
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS--FLQ-DL---RTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLV 76 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~--~~~-~~---r~~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 76 (384)
.||.=|||||=.|+.+|.+-|.+|-+|.|-|..- ... +. +++.+-- +|-.+++-++
T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViR------------------GCVPKKl~VY 63 (478)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIR------------------GCVPKKLMVY 63 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEE------------------CCCCCEEEEE
T ss_conf 7630687067166899999987299089821567873512237746747882------------------4407503572
Q ss_pred EC------CCCCCCCCCCCCCCHHCCCCCCCCHHH--HCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEC----
Q ss_conf 42------576554544434502228753120111--000000001236647983234205653026871789830----
Q gi|254780842|r 77 DI------TDRLITAPDAIFHSSEIGLDAFGYNIP--NHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILL---- 144 (384)
Q Consensus 77 ~~------~~~~~~~~~~~~~~~~~~~~~~g~~i~--r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~---- 144 (384)
-. .+......... ...++.+..|=.... =.-| +-||....++..+.+++.+..-+ +++.|.|.-
T Consensus 64 aS~f~~~ledA~gYGW~i~-e~~~f~W~~l~~~k~~Ei~RL-~~lY~~~L~~AGv~Ll~GrA~~v--d~~tVev~~~dGs 139 (478)
T TIGR01424 64 ASEFAEELEDAKGYGWTIV-EKARFDWKKLLAKKDKEIARL-SGLYKKLLAKAGVELLEGRAELV--DPNTVEVLEKDGS 139 (478)
T ss_pred CCCCHHHHHHHHCCCCEEE-ECCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHCEEEEECCEEEE--CCCEEEEEEECCC
T ss_conf 1223023355524884687-211157789876577888866-68889988853304430433783--6815797410378
Q ss_pred CCCC--EEEEEEEEEECCCCCCCCCCC
Q ss_conf 2320--121112353037543200037
Q gi|254780842|r 145 STGQ--QIVGQFLIGSDGRNSSVRRQM 169 (384)
Q Consensus 145 ~dg~--~i~adlvVgADG~~S~vR~~l 169 (384)
+||+ +++|+=++.|-|-|..+|-.+
T Consensus 140 ddg~ki~yTA~kIliA~Ggrps~kP~l 166 (478)
T TIGR01424 140 DDGKKITYTAKKILIAVGGRPSVKPEL 166 (478)
T ss_pred CCCCEEEEEEEEEEEEECCCCCCCCCC
T ss_conf 788316787759999877878788885
No 327
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.05 Score=33.79 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=29.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|+|.|.+|+++|..|.+.|.+|.+.|.++
T Consensus 14 ~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~ 45 (487)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (487)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999156838999999997869799998982
No 328
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.75 E-value=0.064 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 029999790899999999997898599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
--|+|+|+|-.|+.+|..|++.|.+|+++-|..
T Consensus 6 ~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~ 38 (313)
T PRK06249 6 PRIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 889999914999999999996699569996755
No 329
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.73 E-value=0.061 Score=33.12 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=29.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|+|.|.+|+++|.+|.+.|.+|.+.|.+.
T Consensus 8 ~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~~ 39 (438)
T PRK03806 8 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 39 (438)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999457888999999997899699998999
No 330
>KOG4716 consensus
Probab=94.61 E-value=0.041 Score=34.43 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=31.3
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 7002999979089999999999789859998288
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
..||.+|||||-+||++|-.-++.|-+|.++|--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 7744799868851366779988608707999612
No 331
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59 E-value=0.059 Score=33.22 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=29.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.++|+|.|.+|+++|.+|.+.|.+|.+.|.+.
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~~ 40 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGYQFAVTDTRE 40 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 58999989999999999997889599991899
No 332
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.51 E-value=0.15 Score=30.32 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-+|+|.|.+|+++|..|.+.|.+|.+.|.++.
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSERNDS 34 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 99995489999999999978995999989899
No 333
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.40 E-value=0.076 Score=32.42 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|.|||+|.-|.-.|..++++|++|+++|.++.
T Consensus 6 VaViGaGtMG~gIA~~~a~aG~~V~l~D~~~~ 37 (503)
T PRK08268 6 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 37 (503)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 99979688999999999938990899979989
No 334
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.34 E-value=0.092 Score=31.83 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=30.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|.+ |.|+|+|-=|.++|..|++.|++|.++.+++
T Consensus 1 Mmk--I~ViGaGawGtAlA~~la~n~~~V~lw~r~~ 34 (325)
T PRK00094 1 MMK--IAVLGAGSWGTALAILLARNGHDVVLWGRDP 34 (325)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCEEEEEEECH
T ss_conf 988--9998989999999999997899789998389
No 335
>KOG0405 consensus
Probab=94.27 E-value=0.28 Score=28.22 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=71.0
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHH---------HHHHHHHCCCHHHHHHCCCCCCC
Q ss_conf 700299997908999999999978985999828855557836888788---------99999988994788860471234
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGE---------GIDFLKEINVWDFLQDIAEPVSS 72 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~---------s~~~L~~lGl~~~l~~~~~~~~~ 72 (384)
+.||.++||||-.|+..|..-+.+|.++.++|..-. .++....-. +-..-.++ ++-...+.+++.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~---lGGTCVn~GCVPKKvm~~~a~~~~~~---~da~~yG~~~~~ 92 (478)
T KOG0405 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFG---LGGTCVNVGCVPKKVMWYAADYSEEM---EDAKDYGFPINE 92 (478)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC---CCCEEEEECCCCCEEEEEHHHHHHHH---HHHHHCCCCCCC
T ss_conf 423669984786136776778753853799863778---67447860456413677444556775---456642985344
Q ss_pred EEEEECCCCCCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCCE--E
Q ss_conf 18994257655454443450222875312011100000000123664798323420565302687178983023201--2
Q gi|254780842|r 73 FRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDPLIHCFDALANEIQIGEEEVTILLSTGQQ--I 150 (384)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~v~v~~~dg~~--i 150 (384)
...|+=..+....-.|+ .| ++.+|+...+...+.++.....-+ .+..+.|...||++ +
T Consensus 93 --------------~~~fdW~~ik~krdayi-~R---LngIY~~~L~k~~V~~i~G~a~f~--~~~~v~V~~~d~~~~~Y 152 (478)
T KOG0405 93 --------------EGSFDWKVIKQKRDAYI-LR---LNGIYKRNLAKAAVKLIEGRARFV--SPGEVEVEVNDGTKIVY 152 (478)
T ss_pred --------------CCCCCHHHHHHHHHHHH-HH---HHHHHHHHCCCCCEEEEEEEEEEC--CCCCEEEEECCCEEEEE
T ss_conf --------------46776799875116899-98---878988542315406996267875--89944799538815787
Q ss_pred EEEEEEEECCCCCCCCC
Q ss_conf 11123530375432000
Q gi|254780842|r 151 VGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 151 ~adlvVgADG~~S~vR~ 167 (384)
+++.+..|-|-+...-+
T Consensus 153 tak~iLIAtGg~p~~Pn 169 (478)
T KOG0405 153 TAKHILIATGGRPIIPN 169 (478)
T ss_pred ECCEEEEEECCCCCCCC
T ss_conf 21408997378467899
No 336
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.26 E-value=0.09 Score=31.90 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
+|+|||||-+|+-.|+.|++.+-+|+|+.+++.
T Consensus 145 ~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 699983888999999999974890899997875
No 337
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.20 E-value=0.091 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=29.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|+|.|.+|+++|..|.+.|.+|.+.|.++
T Consensus 11 ~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (457)
T PRK01390 11 TVALFGLGGSGLATARALKAGGAEVIAWDDNP 42 (457)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999436999999999997899799993992
No 338
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.15 E-value=0.11 Score=31.17 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=28.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHC----CCEEEEEECCCC
Q ss_conf 0299997908999999999978----985999828855
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKK----GFLTALVSPRSF 37 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~----g~~v~iiE~~~~ 37 (384)
-+.-|||+|+|+|++|..|-|- |-++.|+|..+.
T Consensus 23 ~~AyiiGsGiasLAaA~~LIrDa~~pg~~IhIlE~~~~ 60 (577)
T PRK13977 23 KKAYLIGSGLASLAAAVFLIRDGHMPGENITILEELPI 60 (577)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 75899887789999999998606879652289756888
No 339
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.094 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=29.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|+|+|.|.+|+++|..|.+.|.+|.+.|.++
T Consensus 7 ~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999989999999999997899199997999
No 340
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.11 E-value=0.046 Score=34.05 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=29.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 00299997908999999999978985999828
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSP 34 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~ 34 (384)
.+.|+|||-||||-++|+.|-+.|+.|+-+|-
T Consensus 401 g~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDG 432 (1048)
T PRK06567 401 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 432 (1048)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 96489992486520188998747872898654
No 341
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=94.10 E-value=0.49 Score=26.49 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEECCCCEE-EEEECC--CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000012366479832342056530268717-898302--3201211123530375432000378733222243
Q gi|254780842|r 108 VLMESFAEKISQDPLIHCFDALANEIQIGEEE-VTILLS--TGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYP 179 (384)
Q Consensus 108 ~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-v~v~~~--dg~~i~adlvVgADG~~S~vR~~l~~~~~~~~y~ 179 (384)
++...|.+.+.+.+.-.+....+++++..+++ ..++++ +++++-||.|.-|-|+..++.. ||++.-+.+.+
T Consensus 227 d~R~~~~~~le~~Gi~i~~~~~~~~i~~~~~GR~~~~~sGe~~~~~vAd~vl~AtGR~Pn~~G-LgLE~aGV~~~ 300 (478)
T TIGR01424 227 DMRAELAEELEERGIRIVPKDSVTSIEKVDDGRLKVTLSGEKDEEIVADVVLFATGRVPNVKG-LGLEAAGVELN 300 (478)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCC-CCCHHCCCEEE
T ss_conf 999999998752973895010443642078987899974689981654332320088776576-36101150651
No 342
>KOG4405 consensus
Probab=94.10 E-value=0.063 Score=33.01 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=36.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCE
Q ss_conf 00299997908999999999978985999828855557836
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRT 43 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~ 43 (384)
+|||+|||-|..-..+|.+.+|.|.+|+-+|++++....-+
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~wa 48 (547)
T KOG4405 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWA 48 (547)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 34389981798489999986003770586068655577640
No 343
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.07 E-value=0.09 Score=31.91 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=30.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
-|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 9 kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 9 KVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 7999926651099999999779869998389876
No 344
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.04 E-value=0.079 Score=32.32 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=26.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCCC
Q ss_conf 2999979089999999999789-8599982885555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRSFLQ 39 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~~~~ 39 (384)
||+|+|+||.||+++..-+..| .+|++.|++.+..
T Consensus 164 ~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~neyRl 199 (341)
T TIGR00692 164 DVLVIGAGPIGLMAVAVAKAAGARNVIVIDKNEYRL 199 (341)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 189985774789999998772784059965864799
No 345
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.1 Score=31.41 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=26.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 970029999790899999999997898--599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~ 36 (384)
||+ |+|+|.|.+|.++|..|.+.|. .|.++|.+.
T Consensus 7 ~Kk--vlV~GlG~sG~s~a~~L~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 7 IKN--VVVVGLGITGLSVVKHLRKTQPQLTVKVIDTRE 42 (438)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 974--999906785899999999669984699963988
No 346
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.76 E-value=0.27 Score=28.36 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHH
Q ss_conf 29999790899999999997898--59998288555578368887889999998899478
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDF 62 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~ 62 (384)
.|+|||-|+.|-++|..|.+.|. +|.-+|+++ .+.....++|+-+.
T Consensus 8 ~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~------------~~l~~A~~~g~id~ 55 (307)
T PRK07502 8 RVALIGLGLIGSSLARAIRRQGLAGEIVGAARSA------------ETRARARELGLGDR 55 (307)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCH------------HHHHHHHHCCCCCH
T ss_conf 6899927879999999998549985799984999------------99999998699751
No 347
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.74 E-value=0.14 Score=30.58 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=30.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 970029999790899999999997898--59998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~~ 38 (384)
|| |.|||+|-.|.++|+.|...++ ++.++|.....
T Consensus 1 mK---I~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~~ 37 (308)
T cd05292 1 MK---VAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAK 37 (308)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 97---99999488899999999867998879999188984
No 348
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=93.72 E-value=0.13 Score=30.61 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=30.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|+|+|.+|+.+|....+.|.+|.++|.+..
T Consensus 22 ~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~ 54 (150)
T pfam01262 22 KVVVIGGGVVGLGAAATAKGLGAPVTILDVRPE 54 (150)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 799989878999999999867998999729999
No 349
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.70 E-value=0.12 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=26.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 97002999979089999999999789859998288
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
|| |+|+|.|.+|.++|..|.+.|. +.+++.+
T Consensus 1 mK---i~V~GlG~sG~s~a~~L~~~g~-~~i~dD~ 31 (401)
T PRK03815 1 MK---ISLFGYGKTTKALARFFVKNGG-VDIYDDK 31 (401)
T ss_pred CE---EEEEEECHHHHHHHHHHHHCCC-EEEEECC
T ss_conf 93---9998477718999999994879-7999899
No 350
>KOG2018 consensus
Probab=93.64 E-value=0.13 Score=30.76 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=39.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 70029999790899999999997898-59998288555578368887889999998899
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSFLQDLRTTMLMGEGIDFLKEINV 59 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl 59 (384)
++| |+|||+|=+|.-.+.+|.|.|. ++.|+|-.... -..|+..++..|...|.
T Consensus 74 ~sy-VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVS----lsSLNrHs~Atl~DVG~ 127 (430)
T KOG2018 74 NSY-VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVS----LSSLNRHSCATLADVGT 127 (430)
T ss_pred CCE-EEEEECCCHHHHHHHHHHHHCCCEEEEECHHHCC----HHHHHHHHHHHHHHCCC
T ss_conf 767-9999168522999999998268638995310145----75632235246765388
No 351
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.63 E-value=0.1 Score=31.50 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=29.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|+|+|-.|+.+|..|++.|..|+++-|.+
T Consensus 1 mk---I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MK---ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 95---9998787899999999985899579981089
No 352
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.59 E-value=0.14 Score=30.40 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 97002999979089999999999789-8599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~ 36 (384)
|++ |+|+|+|-.|.+.|..|+++| .+|+|-+|..
T Consensus 1 m~~--ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMK--ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCC--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 972--89989866679999999857896299984888
No 353
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.58 E-value=0.15 Score=30.32 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=30.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 970029999790899999999997898--5999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|| |.|||+|-.|.++|..|...|+ ++.++|....
T Consensus 1 mK---I~IiGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (312)
T PRK06223 1 MK---ISIIGAGNVGATLAHLLALKELGKDVVLFDIPEG 36 (312)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 97---9999969899999999985799874899769997
No 354
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.48 E-value=0.14 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 97002999979-0899999999997898--599982885
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGF--LTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~--~v~iiE~~~ 36 (384)
|| |.|||| |-.|.++|.+|...|+ ++.++|-+.
T Consensus 1 mK---V~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (310)
T cd01337 1 VK---VAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN 36 (310)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 98---9999999818999999997299977699982774
No 355
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.46 E-value=0.15 Score=30.25 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 321121238999999
Q gi|254780842|r 295 GLNLSMRDVIILLNL 309 (384)
Q Consensus 295 G~n~ai~Da~~L~~~ 309 (384)
|.|.|++.|..|++.
T Consensus 360 GGnsA~eeAl~La~~ 374 (515)
T TIGR03140 360 GGNSGIEAAIDLAGI 374 (515)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 977999999999841
No 356
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.45 E-value=0.19 Score=29.46 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCC
Q ss_conf 970029999790899999999997898-59998288555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSFL 38 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~~ 38 (384)
|++ |.|||+|-.|.++|.+|...++ ++.++|..+..
T Consensus 1 M~K--V~IIGaG~VG~~~A~~l~~~~~~eivLiDi~~~~ 37 (313)
T PTZ00117 1 MKK--ISIIGSGQIGAIVGLLLLQENLGDVYLYDVIEGV 37 (313)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 978--9998979899999999970899879999588983
No 357
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=93.44 E-value=0.13 Score=30.82 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEECC
Q ss_conf 999979089999999999789--859998288
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKG--FLTALVSPR 35 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g--~~v~iiE~~ 35 (384)
|+|+|+|=.|+..|..|++.| .+|+++-|.
T Consensus 2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68995178899999998731899518999887
No 358
>PTZ00318 NADH dehydrogenase; Provisional
Probab=93.31 E-value=0.096 Score=31.67 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=27.1
Q ss_pred CCCCEEEEEECCCCEEEEEEC---C--------CCCEEEEEEEEEECCCCCCCC
Q ss_conf 234205653026871789830---2--------320121112353037543200
Q gi|254780842|r 124 HCFDALANEIQIGEEEVTILL---S--------TGQQIVGQFLIGSDGRNSSVR 166 (384)
Q Consensus 124 ~~~~~~v~~i~~~~~~v~v~~---~--------dg~~i~adlvVgADG~~S~vR 166 (384)
.++...+.+++.....+.+.. . +..++..|+||-|-|..++.-
T Consensus 81 ~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~F 134 (514)
T PTZ00318 81 RFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTF 134 (514)
T ss_pred EEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCC
T ss_conf 599999988712107899974012466544445663642887898678655678
No 359
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.18 E-value=0.2 Score=29.31 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 29999790899999999997898--5999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
-|.|||+|-.|.++|..|...|+ ++.++|..+.
T Consensus 5 Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 39 (312)
T cd05293 5 KVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 69998978889999999996699887999938898
No 360
>KOG1439 consensus
Probab=93.16 E-value=0.044 Score=34.15 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=35.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 700299997908999999999978985999828855557
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD 40 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~ 40 (384)
..|||+|.|-|+.-+.++.+|+..|-+|+.+||++....
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~ 41 (440)
T KOG1439 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGG 41 (440)
T ss_pred CCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCC
T ss_conf 751499973773641000002576958999707887776
No 361
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=93.07 E-value=0.17 Score=29.86 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 970029999790-899999999997898--5999828855
Q gi|254780842|r 1 MNHFDVIIIGSG-LAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG-~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|| |.|||+| -.|.++|..|...|+ ++.++|....
T Consensus 1 mK---V~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~ 37 (142)
T pfam00056 1 VK---VAVVGAGGGVGSSLAFALALQGLADELVLVDINKD 37 (142)
T ss_pred CE---EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 98---99989877899999999974796634788505776
No 362
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=93.04 E-value=0.088 Score=31.96 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.7
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CEEEEEEC
Q ss_conf 999979089999999999789--85999828
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKG--FLTALVSP 34 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g--~~v~iiE~ 34 (384)
|-|||||-+|.|+|..||++- -++.++|=
T Consensus 4 isvIGAGfvGaTTAf~lA~KeLard~VLlDi 34 (308)
T TIGR01763 4 ISVIGAGFVGATTAFLLAEKELARDVVLLDI 34 (308)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 8997068612589999986740671689850
No 363
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=92.99 E-value=0.22 Score=29.07 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=28.1
Q ss_pred EEEEECCCHHHHHHHHHHHHC----CCEEEEEECCCC
Q ss_conf 299997908999999999978----985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKK----GFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~----g~~v~iiE~~~~ 37 (384)
+.-|||+|+|+|++|..|-|- |-++.|+|..+.
T Consensus 4 ~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~ 40 (500)
T pfam06100 4 SAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPL 40 (500)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 5999897689999889886427878641389855888
No 364
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.95 E-value=0.26 Score=28.45 Aligned_cols=34 Identities=38% Similarity=0.433 Sum_probs=29.0
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 97002999979-0899999999997898--5999828855
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|| |.|||| |-.|.++|..|...++ ++.++|....
T Consensus 1 mK---V~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 37 (309)
T cd05294 1 MK---VSIIGASGRVGSATALLLAKEDVVKEINLISRPKS 37 (309)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 98---99999997699999999983799875999605564
No 365
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.79 E-value=0.2 Score=29.33 Aligned_cols=13 Identities=31% Similarity=0.289 Sum_probs=7.4
Q ss_pred HCCCCEECCCCCC
Q ss_conf 3794210110011
Q gi|254780842|r 275 KKRVVLVGEAAHA 287 (384)
Q Consensus 275 ~~rv~liGDAAH~ 287 (384)
.|+++++|=....
T Consensus 262 gG~v~~vGv~~~~ 274 (350)
T COG1063 262 GGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEEEECCCCC
T ss_conf 9899999515886
No 366
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.73 E-value=0.79 Score=24.96 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEECCCCE-EE----EEECCCCC--EEEEEEEEEECCCCCCC
Q ss_conf 0000001236647983234205653026871-78----98302320--12111235303754320
Q gi|254780842|r 108 VLMESFAEKISQDPLIHCFDALANEIQIGEE-EV----TILLSTGQ--QIVGQFLIGSDGRNSSV 165 (384)
Q Consensus 108 ~L~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-~v----~v~~~dg~--~i~adlvVgADG~~S~v 165 (384)
.+.+.|++++.+.+++.+.+..+.++-.+.+ .+ .+...+|+ .+.|+-||-|.|--+.+
T Consensus 127 ~i~~~L~~~~~~~~i~~~~~~~~~~li~~~dg~v~Gv~~~d~~~g~~~~i~AkaVVLATGG~g~l 191 (570)
T PRK05675 127 ALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCC
T ss_conf 99999999987179889996898765574798299999997589978999834699916988665
No 367
>PRK08507 prephenate dehydrogenase; Validated
Probab=92.69 E-value=0.2 Score=29.31 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHH
Q ss_conf 970029999790899999999997898--5999828855557836888788999999889947
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWD 61 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~ 61 (384)
|| |+|||-|.-|-++|.+|++.|. +|.-+|+++ .+.+...++|+-+
T Consensus 1 M~---I~IiGlGLiGgSla~alk~~~~~~~V~g~d~~~------------~~~~~A~~~g~id 48 (275)
T PRK08507 1 MK---IGIIGLGLMGGSLGLALKENKLISCVYGYDHNE------------EHEKDALDLGLVD 48 (275)
T ss_pred CE---EEEEECCHHHHHHHHHHHHCCCCCEEEEEECCH------------HHHHHHHHCCCCC
T ss_conf 98---999900878999999999509986799995999------------9999999869986
No 368
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=92.69 E-value=0.13 Score=30.78 Aligned_cols=32 Identities=50% Similarity=0.679 Sum_probs=29.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 02999979089999999999789859998288
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
||++|||+|-+|+-+|...++.|.++.++...
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~ 32 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLN 32 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEEC
T ss_conf 90688617620035677765417513455404
No 369
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=92.53 E-value=0.25 Score=28.66 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=31.9
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|++ |.+||-|.-|...|..|.++|++|.++++.+.
T Consensus 1 M~~--Ig~IGlG~MG~~ma~~L~~~g~~v~v~d~~~~ 35 (163)
T pfam03446 1 MAK--IGFIGLGVMGSPMALNLLKAGYTVTVYNRTPE 35 (163)
T ss_pred CCE--EEEEEEHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 988--99983679899999999977996999979788
No 370
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=0.24 Score=28.74 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=26.3
Q ss_pred CCEE---EEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9700---29999790899999999997898599982
Q gi|254780842|r 1 MNHF---DVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 (384)
Q Consensus 1 M~~~---DV~IvGaG~aGl~lA~~L~~~g~~v~iiE 33 (384)
|+.| .|+|+|.|.+|.++|..|++.+..+++-|
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~~~~~~~dd 36 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNKYDLIVYDD 36 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEC
T ss_conf 976689908999587879999999971999899989
No 371
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.41 E-value=0.28 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECC
Q ss_conf 97002999979-0899999999997898--59998288
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGF--LTALVSPR 35 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~--~v~iiE~~ 35 (384)
|.+ |.|||| |-.|.++|.+|...|+ +..++|-+
T Consensus 1 m~K--V~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~ 36 (313)
T PTZ00325 1 MFK--VAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIV 36 (313)
T ss_pred CCE--EEEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 938--999899986999999999838997779998089
No 372
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=92.31 E-value=0.27 Score=28.36 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|||+|-+|+=.|..|++..-+|.+.-|+..
T Consensus 185 rVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~ 217 (532)
T pfam00743 185 RVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGS 217 (532)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCEEEEEEECCC
T ss_conf 499978889841059999852786899970685
No 373
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.14 E-value=0.34 Score=27.65 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.6
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 7002999979089999999999789859998288
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
++..|+|||||-+++-=+..|-+.|-.|+|+-+.
T Consensus 23 ~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVSP~ 56 (222)
T PRK05562 23 NKIKVLVIGGGKAAFIKGKTFLKKGCYVEILSKE 56 (222)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 6766999998799999999998789989998786
No 374
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.11 E-value=0.54 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCEEEEEEECCCHHHHH-HHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 97002999979089999-999999789859998288555578368887889999998899
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSV-AAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINV 59 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~-lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl 59 (384)
||+ |-+||.|=+|++ +|.+|++.|++|+.-|.... +. .+.|++.|+
T Consensus 8 ~k~--ih~iGigG~GmsalA~~l~~~G~~V~gsD~~~~----------~~-~~~L~~~Gi 54 (459)
T PRK00421 8 IKR--IHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES----------AV-TQRLLELGA 54 (459)
T ss_pred CCE--EEEEEECHHHHHHHHHHHHHCCCEEEEECCCCC----------HH-HHHHHHCCC
T ss_conf 788--999986688899999999968993999889899----------78-999997879
No 375
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.80 E-value=0.27 Score=28.40 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-|.|||||.-|.-.|..++++|++|+++|.++.
T Consensus 315 ~v~ViGaG~MG~GIA~~~a~aG~~V~l~D~~~e 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 799978771079999999957995799978999
No 376
>KOG2755 consensus
Probab=91.61 E-value=0.17 Score=29.93 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.0
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCCC
Q ss_conf 99997908999999999978--98599982885555
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKK--GFLTALVSPRSFLQ 39 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~--g~~v~iiE~~~~~~ 39 (384)
.+||||||||.++|-.|++. .-+++++-.+++..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 599857614325899997538887389996417888
No 377
>PRK10262 thioredoxin reductase; Provisional
Probab=91.58 E-value=0.38 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=17.9
Q ss_pred HHCCCCEECCCCCCCCC---H-HHHHHHHHH
Q ss_conf 53794210110011384---4-565321121
Q gi|254780842|r 274 GKKRVVLVGEAAHALPP---I-CGQGLNLSM 300 (384)
Q Consensus 274 ~~~rv~liGDAAH~~~P---~-~GqG~n~ai 300 (384)
.-++|..+||..+.... . .|+|...|+
T Consensus 278 sipGifAaGDv~~~~~~qv~~Avg~G~~Aa~ 308 (321)
T PRK10262 278 SIPGVFAAGDVMDHIYRQAITSAGTGCMAAL 308 (321)
T ss_pred CCCCEEEEEECCCCCCCEEEEEHHHHHHHHH
T ss_conf 9899899994778988768780785899999
No 378
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.55 E-value=0.33 Score=27.78 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=8.3
Q ss_pred HCCCCEECCCCC
Q ss_conf 379421011001
Q gi|254780842|r 275 KKRVVLVGEAAH 286 (384)
Q Consensus 275 ~~rv~liGDAAH 286 (384)
+|.-+..|||++
T Consensus 459 ~g~~v~~GDa~~ 470 (558)
T PRK10669 459 RGIRAVLGNAAN 470 (558)
T ss_pred CCCEEEEECCCC
T ss_conf 899799978998
No 379
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=91.51 E-value=0.33 Score=27.78 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=5.8
Q ss_pred HCCCCEECCC
Q ss_conf 3794210110
Q gi|254780842|r 275 KKRVVLVGEA 284 (384)
Q Consensus 275 ~~rv~liGDA 284 (384)
.++++++|=.
T Consensus 253 ~G~iv~~G~~ 262 (347)
T PRK10309 253 RAQLALVGTL 262 (347)
T ss_pred CEEEEEEECC
T ss_conf 7499998057
No 380
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=91.45 E-value=0.12 Score=30.88 Aligned_cols=30 Identities=37% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEEC
Q ss_conf 2999979089999999999789-85999828
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSP 34 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~ 34 (384)
|.+|||+|=||.+||.-|.-=+ -+|+|||-
T Consensus 1 DyiIIG~GSAGsvLa~RLsED~~nsVlvLEa 31 (540)
T TIGR01810 1 DYIIIGAGSAGSVLATRLSEDVSNSVLVLEA 31 (540)
T ss_pred CEEEECCCCHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 9588637714666130001358766799824
No 381
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=91.38 E-value=0.57 Score=26.02 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=29.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|.|+|||--|.++|...++.|+++.++++.+.
T Consensus 15 IgIlGgGQLg~Mla~aA~~LG~~vivld~~~d 46 (395)
T PRK09288 15 VMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN 46 (395)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99989889999999999987998999848995
No 382
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.29 E-value=0.43 Score=26.90 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=29.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
--|+|||+|=-|..+|..|++.|+ ++.|+|...
T Consensus 25 s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~ 58 (337)
T PRK12475 25 KHVLIIGAGALGAANAEALVRAGIGKLTIADRDY 58 (337)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 9699997777789999999982898699984998
No 383
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.15 E-value=0.37 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=32.8
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 700299997908999999999978985999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
++.||-|||=|.-|.-+|+-|+++|++|.+++|...
T Consensus 4 ~~~~IGiIGLGvMG~nmA~Nl~~~G~~V~vynrt~~ 39 (474)
T PTZ00142 4 GESDIGLIGLAVMGQNLSLNMYSRGFKVSVYNRTTE 39 (474)
T ss_pred CCCCEEEEEEHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 767466873638679999999978987999779879
No 384
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.58 Score=25.96 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=11.3
Q ss_pred HHCCCCEECCCCCCCC
Q ss_conf 5379421011001138
Q gi|254780842|r 274 GKKRVVLVGEAAHALP 289 (384)
Q Consensus 274 ~~~rv~liGDAAH~~~ 289 (384)
.-.+|..+||.+....
T Consensus 264 svpGifAaGDv~~~~~ 279 (305)
T COG0492 264 SVPGIFAAGDVADKNG 279 (305)
T ss_pred CCCCEEECHHHCCCCC
T ss_conf 4588898623315632
No 385
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.00 E-value=0.39 Score=27.20 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=29.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
.|+|+|||.+||.++..-.+.|-.|..+|.++.
T Consensus 167 kVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~ 199 (510)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (510)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 289974647779999999627978999658788
No 386
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.98 E-value=0.46 Score=26.66 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
--|+|||+|=-|..+|..|++.|+ ++.|+|...
T Consensus 25 a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 9789987777779999999984898299980999
No 387
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.94 E-value=0.43 Score=26.94 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=29.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|.|+|+|-=|.++|..|+++|++|.+.-+++.
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 89981783799999999966984699962899
No 388
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=90.87 E-value=0.5 Score=26.42 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=29.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 29999790899999999997898-5999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
-|+|||+|-.|..+|..|++.|+ +++++|....
T Consensus 3 kVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~v 36 (134)
T pfam00899 3 RVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTV 36 (134)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 8999898889999999999938974999989567
No 389
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.79 E-value=0.47 Score=26.60 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=30.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-|+|+|.|.-|-.+|..|+..|+.+.++.+...
T Consensus 5 ~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 5 KVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 899987746779999999976984799724774
No 390
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.78 E-value=0.54 Score=26.18 Aligned_cols=32 Identities=34% Similarity=0.279 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 9999790899999999997898-5999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
|+|||+|=-|+.+|..|++.|+ +..++|....
T Consensus 2 V~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~V 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 899876788999999999818973999989946
No 391
>PRK05086 malate dehydrogenase; Provisional
Probab=90.67 E-value=0.42 Score=27.01 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=26.6
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHC-CC--EEEEEECCC
Q ss_conf 97002999979-08999999999978-98--599982885
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKK-GF--LTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~-g~--~v~iiE~~~ 36 (384)
|| |.|||| |-.|.++|.+|+.. .. ++.++|-.+
T Consensus 1 mK---V~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~ 37 (312)
T PRK05086 1 MK---VAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP 37 (312)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 98---99998998699999999982898777499975888
No 392
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.50 E-value=0.46 Score=26.72 Aligned_cols=32 Identities=28% Similarity=0.206 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 9999790899999999997898-5999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
|.|||+|-.|.++|..|...|+ ++.++|....
T Consensus 1 V~IIGaG~VG~~~a~~l~~~~~~el~L~D~~~~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 989896888999999998579967999809998
No 393
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.34 E-value=0.64 Score=25.66 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 970029999790899999999997898-5999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
|++--|.|||+|-.|.++|..|...++ ++.++|....
T Consensus 5 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~eivLiDi~~~ 42 (322)
T PTZ00082 5 IPRKKISLIGSGNIGGVMAYLIQLKNLADVVLFDIVPN 42 (322)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 17982999896989999999996389977999978898
No 394
>KOG2304 consensus
Probab=90.31 E-value=0.31 Score=27.94 Aligned_cols=32 Identities=38% Similarity=0.433 Sum_probs=30.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|.|||||.-|.-.|...+..|+.|.++++..
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEECCCH
T ss_conf 24787566432039999885199469854777
No 395
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.30 E-value=0.71 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=30.1
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 0029999790899999999997898--5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
+--|.|||+|=.|.++|..|...|+ ++.++|....
T Consensus 6 ~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9849999979889999999986699888999808987
No 396
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=90.26 E-value=0.65 Score=25.61 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 97002999979-089999999999789859998288
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
|| |+|-|| |-.|..++..|...|++|.++++-
T Consensus 1 Mk---vLVTGg~GFIGs~l~~~Ll~~g~~V~~~d~~ 33 (338)
T PRK10675 1 MR---VLVTGGSGYIGSHTCVQLLQNGHDVVILDNL 33 (338)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 91---9998987679999999999784989999889
No 397
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.22 E-value=0.45 Score=26.79 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=34.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHH
Q ss_conf 299997908999999999978985999828855557836888788999999889947
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWD 61 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~ 61 (384)
.|+|||-|+.|-++|++|++.|..+.|+.-... ..+...-.+.|+-+
T Consensus 2 ~V~IiGlGLIGgSlalalk~~g~~~~i~~~d~~----------~~~l~~A~~~g~id 48 (357)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS----------GAQLARALGFGVID 48 (357)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCCEEEEEECCC----------HHHHHHHHHCCCCC
T ss_conf 799997787899999999854997699996699----------99999998689977
No 398
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=90.19 E-value=0.36 Score=27.43 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=31.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 00299997908999999999978985999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
...|+|||+|-=|.=.|-.-+++||+|.+||-++.
T Consensus 5 ~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r~e 39 (508)
T TIGR02279 5 VVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIRAE 39 (508)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHH
T ss_conf 10689964685210389999825984887228889
No 399
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.13 E-value=0.69 Score=25.40 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=29.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 0029999790899999999997898-5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
+--|+|||+|=.|..+|..|++.|+ ++.++|....
T Consensus 32 ~s~VlivG~GGlG~~~~~~La~aGvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAAAQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 197899877777899999999859965999968867
No 400
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=89.88 E-value=0.49 Score=26.49 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=29.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 29999790899999999997898-5999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
.|+|||+|==|...+..|+.+|+ ++.|+|....
T Consensus 23 ~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V 56 (210)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHV 56 (210)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEE
T ss_conf 6599972614568999998288837899851677
No 401
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=89.87 E-value=0.77 Score=25.06 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=36.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCEEEECHHHHHHHHHCC
Q ss_conf 0029999790899999999997898-5999828855557836888788999999889
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSFLQDLRTTMLMGEGIDFLKEIN 58 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lG 58 (384)
+-.|+|||.|=+|.-++-+|+|.|+ +.+++|.....- ..++......+..+|
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v----TN~NRQi~A~~~~iG 82 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV----TNTNRQIHALLGDIG 82 (263)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECHHCCC----CCCCHHHHHHHHHCC
T ss_conf 09489994584539999999981888189971201022----232126677662314
No 402
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.61 E-value=0.72 Score=25.26 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=27.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 029999790899999999997898599982
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE 33 (384)
..|+||||=.=-+.++..|++.|.+|.++-
T Consensus 3 ~~iaviGGD~Rq~~l~~~L~~~g~~V~~~g 32 (296)
T PRK08306 3 MHIAVIGGDARQLELIRKLVELGAKVSLVG 32 (296)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 489997875899999999997799799983
No 403
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.61 E-value=0.58 Score=25.95 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=30.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 299997908999999999978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
-|.|||||.-|.-.|..++..|++|.++|.+..
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~ 37 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE 37 (307)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 799972460209999999734995699958989
No 404
>PRK07232 malic enzyme; Reviewed
Probab=89.37 E-value=0.8 Score=24.93 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=33.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCCCCCCCE
Q ss_conf 00299997908999999999978985---999828855557836
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFL---TALVSPRSFLQDLRT 43 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~---v~iiE~~~~~~~~r~ 43 (384)
...|+|.|||-||.+++.+|...|.+ ++++|++-.....|.
T Consensus 186 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~ 229 (753)
T PRK07232 186 DVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRT 229 (753)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCC
T ss_conf 71899978868889999999984998010799957786568887
No 405
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.30 E-value=0.81 Score=24.89 Aligned_cols=35 Identities=37% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+. +.|+|.|=.|.++|..|++.|++|.|--++.+
T Consensus 1 m~~--~~i~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMI--IAIIGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 917--99962571878999999967973999647880
No 406
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.27 E-value=0.91 Score=24.50 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCCCC
Q ss_conf 9999790899999999997898--59998288555
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSFL 38 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~~ 38 (384)
|.|||+|-.|.++|..|...|+ ++.++|.....
T Consensus 2 I~IIGaG~VG~~~A~~l~~~~~~~elvL~Di~~~~ 36 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGV 36 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 89999698999999999856998879999288982
No 407
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.17 E-value=0.65 Score=25.59 Aligned_cols=35 Identities=31% Similarity=0.290 Sum_probs=30.4
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 0029999790899999999997898-5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
+-.|+|||+|=-|..+|..|++.|+ ++.++|....
T Consensus 27 ~s~VlivG~GGLG~~~a~~La~aGVG~i~lvD~D~V 62 (209)
T PRK08644 27 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 62 (209)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCEE
T ss_conf 296899888788999999999938981899889990
No 408
>PRK10083 putative dehydrogenase; Provisional
Probab=89.13 E-value=0.6 Score=25.86 Aligned_cols=10 Identities=40% Similarity=0.660 Sum_probs=6.9
Q ss_pred HCCCCEECCC
Q ss_conf 3794210110
Q gi|254780842|r 275 KKRVVLVGEA 284 (384)
Q Consensus 275 ~~rv~liGDA 284 (384)
.++++++|=.
T Consensus 252 gG~iv~~G~~ 261 (339)
T PRK10083 252 AARIVLMGFS 261 (339)
T ss_pred CEEEEEEECC
T ss_conf 8099999258
No 409
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=89.12 E-value=0.53 Score=26.23 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.7
Q ss_pred EEEECCCHHHH--HHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999--999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGS--VAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl--~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|+|-|.+|. ++|..|.++|..+.+.+.++.
T Consensus 2 i~i~GlG~tG~G~a~a~~L~~~g~~~~~~D~~~~ 35 (476)
T TIGR01087 2 ILILGLGKTGRGVAVARFLKKKGAEVTVTDDDPE 35 (476)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 7899867510789999999972987999984522
No 410
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.08 E-value=0.95 Score=24.39 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=29.1
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790-899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSG-LAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG-~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||+ |+|.||+ =.|..+|..|++.|.+|.+..|+.
T Consensus 1 MK~--vlITGassGIG~a~A~~la~~G~~v~l~~R~~ 35 (243)
T PRK07102 1 MKK--ILIIGATSDIARACARRYAAAGARLYLAARDT 35 (243)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 997--99915745999999999998799899998988
No 411
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.08 E-value=0.69 Score=25.38 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=31.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 70029999790899999999997898-5999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
++-.|+|||.|=.|..+|.+|++.|+ +.+++|....
T Consensus 10 ~~s~V~v~G~GGvGs~~a~~LarsGVG~l~lvD~D~v 46 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEE
T ss_conf 5497899888636899999999809975999719990
No 412
>PRK12862 malic enzyme; Reviewed
Probab=88.95 E-value=1.4 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=33.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCCCCCCCE
Q ss_conf 00299997908999999999978985---999828855557836
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFL---TALVSPRSFLQDLRT 43 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~---v~iiE~~~~~~~~r~ 43 (384)
..-|+|.|+|-||.+++.+|...|++ ++++|++-.....|.
T Consensus 192 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~ 235 (761)
T PRK12862 192 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRT 235 (761)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC
T ss_conf 71899978878899999999983998101799946787778877
No 413
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=88.94 E-value=1 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 97002999979-08999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |+|.|| |-.|..++..|.+.|++|.++.+...
T Consensus 1 Mr---iLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~ 35 (328)
T TIGR03466 1 MK---VLVTGATGFVGSAVVRLLLERGEEVRVLVRPTS 35 (328)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 94---999867779999999999978498999989998
No 414
>PRK08328 hypothetical protein; Provisional
Probab=88.92 E-value=0.81 Score=24.88 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=29.8
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 0029999790899999999997898-599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
+-.|+|||+|=-|..+|..|++.|+ +..++|...
T Consensus 27 ~s~VlvvG~GGlGs~~~~~La~~GvG~i~lvD~D~ 61 (230)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGTVLLIDEQT 61 (230)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCE
T ss_conf 59789988787899999999984898689874878
No 415
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=88.77 E-value=1.2 Score=23.68 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 970029999790899999999997898599982885555
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQ 39 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~ 39 (384)
|+. |-|+|||=-|-++|.+-.+.|+++.++|+.+..+
T Consensus 1 ~~t--vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~P 37 (375)
T COG0026 1 MKT--VGILGGGQLGRMMALAAARLGIKVIVLDPDADAP 37 (375)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 976--9997686999999999986497799956999996
No 416
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=88.69 E-value=0.76 Score=25.07 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=30.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 70029999790899999999997898-5999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
++-.|+|||+|-.|..+|..|+..|+ +++++|....
T Consensus 20 ~~s~VlvvG~GGLG~~v~~~La~aGvg~i~ivD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6095999887889999999999837986999989918
No 417
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=88.65 E-value=0.78 Score=25.01 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 9999790899999999997898--5999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|.|||+|=.|.++|+.|...++ ++.++|....
T Consensus 1 V~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~~ 34 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEE 34 (300)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9898968899999999986799887999818998
No 418
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.62 E-value=1 Score=24.09 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=29.9
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 0029999790899999999997898-5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
+--|+|||.|=.|..+|..|++.|+ ++.++|....
T Consensus 21 ~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 497899887788999999999839975899978745
No 419
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.53 E-value=1.3 Score=23.36 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.0
Q ss_pred EEEECC-CHHHHHHHHHHHHC---C----CEEEEEECCC
Q ss_conf 999979-08999999999978---9----8599982885
Q gi|254780842|r 6 VIIIGS-GLAGSVAAIGAAKK---G----FLTALVSPRS 36 (384)
Q Consensus 6 V~IvGa-G~aGl~lA~~L~~~---g----~~v~iiE~~~ 36 (384)
|+|+|| |..|.++|..|++. | +...++|-..
T Consensus 5 V~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~ 43 (322)
T cd01338 5 VAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ 43 (322)
T ss_pred EEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCC
T ss_conf 999899968999999999711130799726999975757
No 420
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.52 E-value=1.1 Score=23.85 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=29.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 002999979089999999999789859998288
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
.-.|+|||||.++.-=+..|.+.|-.|+|+-+.
T Consensus 10 gk~vLVVGGG~vA~rK~~~Ll~~gA~VtVvsp~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHITVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 986999889899999999998689969998699
No 421
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.50 E-value=1 Score=24.18 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 9999790899999999997898--5999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|.|||+|=.|.++|..|...++ ++.++|..+.
T Consensus 3 I~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9999969889999999985799877999818987
No 422
>KOG0024 consensus
Probab=88.41 E-value=1.7 Score=22.48 Aligned_cols=11 Identities=55% Similarity=0.631 Sum_probs=5.6
Q ss_pred CCCCEECCCCC
Q ss_conf 79421011001
Q gi|254780842|r 276 KRVVLVGEAAH 286 (384)
Q Consensus 276 ~rv~liGDAAH 286 (384)
|-++++|=-++
T Consensus 267 Gt~vlvg~g~~ 277 (354)
T KOG0024 267 GTVVLVGMGAE 277 (354)
T ss_pred CEEEEECCCCC
T ss_conf 78999654787
No 423
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.11 E-value=1.2 Score=23.51 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=28.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 2999979089999999999789859998288
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
.|+|||||..+.-=+..|.+.|-+|+|+-+.
T Consensus 15 ~vLVvGGG~VA~rK~~~Ll~~ga~VtVvsp~ 45 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 7999889899999999998787969999998
No 424
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.10 E-value=0.84 Score=24.78 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |-+||-|.=|.-+|.-|.++|++|.++++.+.
T Consensus 1 Mk---IGfIGLG~MG~~mA~nL~~~G~~V~v~dr~~~ 34 (301)
T PRK09599 1 MQ---LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPE 34 (301)
T ss_pred CE---EEEECHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 97---99983458799999999968990799769999
No 425
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.06 E-value=1 Score=24.18 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 9999790899999999997898-599982
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVS 33 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE 33 (384)
|+++..|--...+|..|.+.|+ +|.-++
T Consensus 62 vvyC~sG~RS~~Aa~~L~~~Gy~~V~~l~ 90 (379)
T PRK08762 62 VLICQSGKRSAHAAADLRELGYRRVASVA 90 (379)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCEECC
T ss_conf 99999987999999999976996608865
No 426
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.01 E-value=1.1 Score=24.04 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=28.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
--|+|||+|=-|+.+|..|+..|+ ++.|+|...
T Consensus 43 a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9789987875789999999982897599987899
No 427
>pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function.
Probab=87.99 E-value=1.5 Score=22.88 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 97002999979089999999999789-8599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~ 36 (384)
|++ |+|+|.||++.-+|..|.+.| -+|-+.-|.+
T Consensus 1 ~~~--vLi~GtGPvaIQLAv~~~~~~~~~vgi~~R~S 35 (429)
T pfam10100 1 MSK--VLILGTGPVAIQLAVDLKLHGDARLGIAGRPS 35 (429)
T ss_pred CCC--EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 973--69963777999999999852374554532753
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.95 E-value=1.2 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 9999790899999999997898-5999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
|+|||+|=.|..+|..|++.|+ +++++|....
T Consensus 2 VlivG~GglG~~va~~L~~~Gv~~i~ivD~D~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 999997989999999999937971999978987
No 429
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.91 E-value=0.97 Score=24.31 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |-+||-|.=|...|..|.+.|++|.++++.+.
T Consensus 2 Mk---IgfIGlG~MG~~ma~~L~~~G~~v~v~dr~~~ 35 (295)
T PRK11559 2 MK---VGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE 35 (295)
T ss_pred CE---EEEECCHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 78---99984057699999999978995899929999
No 430
>PRK08223 hypothetical protein; Validated
Probab=87.84 E-value=1.1 Score=23.78 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=29.3
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 0029999790899999999997898-5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
+--|+|||+|=.|..+|..|++.|+ ++.|+|....
T Consensus 27 ~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~v 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVF 62 (287)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 596899936755799999999828975999749984
No 431
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=87.79 E-value=1.4 Score=23.25 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=29.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908999999999978985999828855
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|-|+|||==|-++|.+..+.|++|.++++.+.
T Consensus 10 IGIlGgGQLgrMla~aA~~lG~~v~vldp~~~ 41 (377)
T PRK06019 10 IGIIGGGQLGRMLALAAAPLGYKVIVLDPDAD 41 (377)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99987868999999999978998999848984
No 432
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=87.77 E-value=1.4 Score=23.04 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=7.1
Q ss_pred HHHHHC-CCCEECCCCC
Q ss_conf 456537-9421011001
Q gi|254780842|r 271 HCFGKK-RVVLVGEAAH 286 (384)
Q Consensus 271 ~~~~~~-rv~liGDAAH 286 (384)
..|..| .++.-|-+-.
T Consensus 312 ~~~~~~aaivaTGrsd~ 328 (432)
T COG0281 312 KEWGDGAAIVATGRSDY 328 (432)
T ss_pred HHCCCCCEEEEECCCCC
T ss_conf 64588978998289898
No 433
>KOG1335 consensus
Probab=87.62 E-value=0.29 Score=28.16 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCE-EEEEECCC---C--CEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 01236647983234205653026871-78983023---2--0121112353037543200037873
Q gi|254780842|r 113 FAEKISQDPLIHCFDALANEIQIGEE-EVTILLST---G--QQIVGQFLIGSDGRNSSVRRQMGYG 172 (384)
Q Consensus 113 L~~~~~~~~~~~~~~~~v~~i~~~~~-~v~v~~~d---g--~~i~adlvVgADG~~S~vR~~l~~~ 172 (384)
..+-+.+.+.-...+.++...+.+.| .+.+++++ + +++++|.+..|-|++..+.. ||++
T Consensus 258 ~qr~L~kQgi~F~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~G-Lgle 322 (506)
T KOG1335 258 FQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG-LGLE 322 (506)
T ss_pred HHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCC-CCHH
T ss_conf 9999986382367232788751068885799997557785068884289998066445466-8804
No 434
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.54 E-value=0.79 Score=24.97 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=28.0
Q ss_pred EEEEECCCHHHHHHHH-HHHHCCCEEEEEECCCC
Q ss_conf 2999979089999999-99978985999828855
Q gi|254780842|r 5 DVIIIGSGLAGSVAAI-GAAKKGFLTALVSPRSF 37 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~-~L~~~g~~v~iiE~~~~ 37 (384)
-|.|||||.-|.-.|. .+++.|++|+++|.++.
T Consensus 311 kv~ViGaG~MG~gIA~~~a~~aG~~V~l~D~~~e 344 (706)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (706)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 7999864732389999999986987999979999
No 435
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=87.44 E-value=1.3 Score=23.49 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=30.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 0029999790899999999997898-5999828855
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
+--|+|||+|=-|+.+|..|+..|+ ++.|+|....
T Consensus 41 ~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~V 76 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 197899888757899999999828974898738982
No 436
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.27 E-value=1.3 Score=23.41 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=29.7
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 0029999790899999999997898-599982885
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
.-+|+|+|+|=++-+.+..|.+.|. ++.|+.|..
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~~~I~i~nR~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 99999986758999999999971998228860899
No 437
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.24 E-value=1.1 Score=24.05 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9700299997908999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|| |-+||=|.=|.-+|.-|.++|++|.++++.+.
T Consensus 1 Mk---IGfIGLG~MG~~mA~nL~~~G~~V~v~d~~~~ 34 (298)
T PRK12490 1 MK---LGLIGLGKMGGNMAERLREDGHEVVGYDVNQE 34 (298)
T ss_pred CE---EEEECHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 97---99983467689999999977994899849989
No 438
>PRK07411 hypothetical protein; Validated
Probab=87.23 E-value=1.3 Score=23.46 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
--|+|||+|=-|+.+|..|+.+|+ ++.|+|...
T Consensus 39 a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDI 72 (390)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9789988872379999999983897599974899
No 439
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=87.23 E-value=1.3 Score=23.45 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
-.|+|||+|-.|-.++..|.+.|. +++|.-|..
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~g~~~i~v~nRt~ 46 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSKGAKKITIANRTL 46 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 9899999609999999999975998899954757
No 440
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.21 E-value=1.1 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=24.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2999979089999999999789859998
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV 32 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~ii 32 (384)
-|+|+|.|.+|.++|..|.+.|..+.+.
T Consensus 10 kv~V~GlG~sG~aaa~~L~~~g~~~~v~ 37 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAQLPAQPLT 37 (468)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEE
T ss_conf 7999834787999999999669904999
No 441
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=87.08 E-value=1.1 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=27.6
Q ss_pred CCEEEEEEECCCHHH-----HHHHHHHHHCCCEEEEEE
Q ss_conf 970029999790899-----999999997898599982
Q gi|254780842|r 1 MNHFDVIIIGSGLAG-----SVAAIGAAKKGFLTALVS 33 (384)
Q Consensus 1 M~~~DV~IvGaG~aG-----l~lA~~L~~~g~~v~iiE 33 (384)
||+ |+|+|||-+| +++|-.|.+.|++|..+-
T Consensus 1 mkk--I~i~~GGTGGHi~Palala~~L~~~g~ev~~ig 36 (359)
T PRK00726 1 MKK--ILLAGGGTGGHVFPALALAEELKKRGWEVLWLG 36 (359)
T ss_pred CCE--EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 988--999958868999999999999983879899997
No 442
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.02 E-value=1.1 Score=23.85 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=30.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Q ss_conf 70029999790899999999997898-5999828855
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRSF 37 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~~ 37 (384)
++-.|+|||+|=-|+.+|..|+..|+ ++.|+|....
T Consensus 18 ~~s~VlVvG~GGLG~~v~~~La~aGVg~i~ivD~D~V 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred HHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 7098999877889999999999749986999959963
No 443
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=86.99 E-value=1.2 Score=23.74 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.9
Q ss_pred EEEECC-CHHHHHHHHHHHHCCC----EEEEEECCCC
Q ss_conf 999979-0899999999997898----5999828855
Q gi|254780842|r 6 VIIIGS-GLAGSVAAIGAAKKGF----LTALVSPRSF 37 (384)
Q Consensus 6 V~IvGa-G~aGl~lA~~L~~~g~----~v~iiE~~~~ 37 (384)
|.|||| |-.|.++|..|...+. ++.++|....
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~ 37 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEE 37 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 9898779779999999998289999988999958987
No 444
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.70 E-value=1.7 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=29.9
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 999979-089999999999789859998288555
Q gi|254780842|r 6 VIIIGS-GLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 6 V~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
|+|.|| |-.|..++..|...|++|..+.+....
T Consensus 3 iLVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDG 36 (314)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999288777999999998589979999178754
No 445
>PRK06483 short chain dehydrogenase; Provisional
Probab=86.54 E-value=1.7 Score=22.59 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=29.6
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790-899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSG-LAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG-~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|++. |+|-||+ =.|..+|..|++.|.+|++..++.
T Consensus 1 M~kt-VlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~ 36 (236)
T PRK06483 1 MSAP-ILITGAGQRIGLALAKHLLAQGQPVIVSYRSH 36 (236)
T ss_pred CCCE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9987-99978998899999999998899899995984
No 446
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=86.53 E-value=0.67 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.0
Q ss_pred EECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 99790899999999997898599982885
Q gi|254780842|r 8 IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 8 IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|||+|-.|..++.+|.+.|++|.=+-..+
T Consensus 2 iIGaGrvG~~L~~al~~aGh~v~gv~srs 30 (111)
T pfam10727 2 IISAGRVGVALGEALERAGHVVHAISAIS 30 (111)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 43765779999999997898289998389
No 447
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.25 E-value=1.6 Score=22.66 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 029999790899999999997898-599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
--|+|||+|=-|+.+|..|+..|+ ++.|+|...
T Consensus 29 s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~ 62 (355)
T PRK05597 29 AKVSVIGAGGLGSPALLYLAGAGVGHITIIDDDV 62 (355)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9689987776689999999984997599972999
No 448
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.21 E-value=1.2 Score=23.74 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCC-------EEEEEECCC
Q ss_conf 97002999979-0899999999997898-------599982885
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGF-------LTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~-------~v~iiE~~~ 36 (384)
|| |+|+|| |..|.++|..|++..+ .+.++|...
T Consensus 1 ~K---V~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~ 41 (323)
T cd00704 1 LH---VLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CE---EEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
T ss_conf 98---999899978999999999728636998600899975888
No 449
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.69 E-value=0.87 Score=24.66 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=6.4
Q ss_pred HHHHCCCEEEEEE
Q ss_conf 9997898599982
Q gi|254780842|r 21 GAAKKGFLTALVS 33 (384)
Q Consensus 21 ~L~~~g~~v~iiE 33 (384)
.|.++|++|+|=+
T Consensus 25 ~l~~~GheVlVe~ 37 (371)
T COG0686 25 ELVNHGHEVLVET 37 (371)
T ss_pred HHHHCCCEEEEEC
T ss_conf 9973795899965
No 450
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=85.68 E-value=1.7 Score=22.53 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 9999790899999999997898-599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
|+|||+|=-|+-++..|+..|+ ++.|+|...
T Consensus 2 VlvvGaGglGce~~k~La~~Gvg~i~iiD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCE
T ss_conf 89994888799999999983998699975990
No 451
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase; InterPro: IPR004572 Protoporphyrinogen oxidase (1.3.3.4 from EC) oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll, in the penultimate step in heme and porphyrin biosynthesis. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.; GO: 0004729 protoporphyrinogen oxidase activity, 0006118 electron transport, 0006779 porphyrin biosynthetic process.
Probab=85.65 E-value=1.2 Score=23.56 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=29.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCC
Q ss_conf 0299997908999999999978------985999828855
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKK------GFLTALVSPRSF 37 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~------g~~v~iiE~~~~ 37 (384)
-+++|+|+|++|++.+..+.+. +.+++++|..+.
T Consensus 3 ~~~~~~ggg~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (556)
T TIGR00562 3 KEVVVVGGGISGLCAAYFLSKERPDKNLGVELTLFEADDR 42 (556)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 4168861761357888887652221247730588724665
No 452
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=85.44 E-value=1.2 Score=23.55 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=63.3
Q ss_pred EEEECC--CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCC-CCCCC-EEEEECCCC
Q ss_conf 999979--08999999999978985999828855557836888788999999889947888604-71234-189942576
Q gi|254780842|r 6 VIIIGS--GLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIA-EPVSS-FRLVDITDR 81 (384)
Q Consensus 6 V~IvGa--G~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl~~~l~~~~-~~~~~-~~~~~~~~~ 81 (384)
|+|-|| |..|-.|+..|.+.|++|+++-|++........ .......-+.++|.- +.+.. ....+ -.+++.-+.
T Consensus 1 ~litGgnTGfiG~~L~~~L~~~g~~V~~l~R~~~~~~~~~~-~~~~~~~~~~~~g~~--~~~~~W~~l~~~DaviNLAG~ 77 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTKSGHEVTILTRSPQAESNTKK-VGYKNWLAEGKLGIV--IAESGWSALEGADAVINLAGE 77 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHC-CCCCCCCCCCCCCCC--CCHHCCCCCCCCCEEEECCCC
T ss_conf 96415330237899999998479989999616864320002-554455552212452--072205667886279855688
Q ss_pred CCCCCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHHCC-----CCCCCCEEEEEECCCCEEEEEE
Q ss_conf 5545444345022287531201110000000012366479-----8323420565302687178983
Q gi|254780842|r 82 LITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQDP-----LIHCFDALANEIQIGEEEVTIL 143 (384)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~g~~i~r~~L~~~L~~~~~~~~-----~~~~~~~~v~~i~~~~~~v~v~ 143 (384)
.+..| ..++ .+.+.. + .=+|=..-+.|.+.+++.+ --.+.+...+.+..+.+.-.++
T Consensus 78 ~i~~P-~RWt-~~~K~~-i--~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~t 139 (307)
T TIGR01777 78 PIADP-KRWT-EERKQE-I--RDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFT 139 (307)
T ss_pred CCCCC-CCCC-HHHHHH-H--HHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEE
T ss_conf 85778-8878-777575-6--5233478999999998465667887168850166630689982151
No 453
>KOG2495 consensus
Probab=85.24 E-value=2.7 Score=21.05 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEECCCCEEEEEE--CCCC----CEEEEEEEEEECCCCCCCCC
Q ss_conf 8323420565302687178983--0232----01211123530375432000
Q gi|254780842|r 122 LIHCFDALANEIQIGEEEVTIL--LSTG----QQIVGQFLIGSDGRNSSVRR 167 (384)
Q Consensus 122 ~~~~~~~~v~~i~~~~~~v~v~--~~dg----~~i~adlvVgADG~~S~vR~ 167 (384)
.+.++...+..++.+...+.+. ++++ -.+..|+||.|-|+.+++=.
T Consensus 123 ~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg 174 (491)
T KOG2495 123 EVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG 174 (491)
T ss_pred CCEEEECCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCC
T ss_conf 7169862607606666679876412688861266026689996267777789
No 454
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=85.07 E-value=1.9 Score=22.09 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 9999790899999999997898-599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
|+|||+|-.|+-++..|+..|+ ++.|+|...
T Consensus 2 VlvvGaGglG~e~lk~La~~Gvg~i~ivD~D~ 33 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 89988888899999999982898599971992
No 455
>PRK06101 short chain dehydrogenase; Provisional
Probab=84.97 E-value=2.3 Score=21.53 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=28.5
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790-899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSG-LAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG-~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||+ |+|.||+ =.|..+|..|++.|.+|.+..|+.
T Consensus 1 Mkt--vlITGassGIG~a~A~~la~~G~~Vi~~~R~~ 35 (241)
T PRK06101 1 MTS--VLITGATSGIGKQLALDYAKAGWKVIACGRNE 35 (241)
T ss_pred CCE--EEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 998--99922404999999999998799899998999
No 456
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=84.93 E-value=1.6 Score=22.67 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 9999790899999999997898--599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--LTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~ 36 (384)
|+|+|+|-.|-.++..|++++. +|+|.++..
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~~~i~vad~~~ 33 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDVDEITVADRSL 33 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 989897787999999997289988699998988
No 457
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.76 E-value=2 Score=22.08 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 02999979089999999999789859998288
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~ 35 (384)
--|+|+|||-=|.++|..|++.|..|. +-+.
T Consensus 7 ~KI~ViGaGawGTALA~~la~n~~~v~-w~r~ 37 (340)
T PRK12439 7 PKVVVLGGGSWGTTVASICARRGPTLQ-WVRS 37 (340)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEE-EECC
T ss_conf 928998969999999999995899899-9689
No 458
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=84.71 E-value=2.1 Score=21.82 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.4
Q ss_pred HCCCCEECCCC
Q ss_conf 37942101100
Q gi|254780842|r 275 KKRVVLVGEAA 285 (384)
Q Consensus 275 ~~rv~liGDAA 285 (384)
.++++++|...
T Consensus 248 ~G~iv~~G~~~ 258 (332)
T PRK13771 248 GGKIVLIGNVD 258 (332)
T ss_pred CCEEEEEECCC
T ss_conf 96999993457
No 459
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=84.68 E-value=1.9 Score=22.11 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=24.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--------EEEEEECC
Q ss_conf 9999790899999999997898--------59998288
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--------LTALVSPR 35 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--------~v~iiE~~ 35 (384)
|.|+|||-=|.++|..|++.|. +|.+.-+.
T Consensus 2 I~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~ 39 (342)
T TIGR03376 2 VAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
T ss_conf 89987799999999999974886545578637999723
No 460
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=84.54 E-value=1.8 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=27.0
Q ss_pred CCEEEEEEECCCHHH-----HHHHHHHHHCCCEEEEEEC
Q ss_conf 970029999790899-----9999999978985999828
Q gi|254780842|r 1 MNHFDVIIIGSGLAG-----SVAAIGAAKKGFLTALVSP 34 (384)
Q Consensus 1 M~~~DV~IvGaG~aG-----l~lA~~L~~~g~~v~iiE~ 34 (384)
||+ |+|+|||-.| +++|-.|.+.|++|..+-.
T Consensus 1 Mkk--Iii~~GGTGGHi~Palala~~L~~~~~~v~~ig~ 37 (352)
T PRK12446 1 MKK--IVFTGGGSAGHVTPNLAIIPKLIEDNWDISYIGS 37 (352)
T ss_pred CCE--EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 987--9999587588899999999999848995999988
No 461
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.51 E-value=2.2 Score=21.69 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=28.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 299997-90899999999997898599982885
Q gi|254780842|r 5 DVIIIG-SGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvG-aG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.++|+| .|+.|..+|..|++.|-+|+++-|+.
T Consensus 30 ~~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~~ 62 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 899985885789999999998399799995878
No 462
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.32 E-value=1.9 Score=22.13 Aligned_cols=15 Identities=7% Similarity=-0.186 Sum_probs=6.3
Q ss_pred EECHHHHH-HHHHCCC
Q ss_conf 88788999-9998899
Q gi|254780842|r 45 MLMGEGID-FLKEINV 59 (384)
Q Consensus 45 ~l~~~s~~-~L~~lGl 59 (384)
++||.=.. +++.+|+
T Consensus 18 S~SP~ihn~~f~~~gl 33 (275)
T PRK00258 18 SKSPFIHNAAAKQLGL 33 (275)
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 3079999999998699
No 463
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=84.32 E-value=1.4 Score=23.05 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 9999790899999999997898-599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
|+|+|+|--|+..|..|.+.|+ +++++|...
T Consensus 2 vLllGaGtLGc~var~L~~~GV~~it~VD~~~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEECCE
T ss_conf 79985775206999999983698589984998
No 464
>PRK06849 hypothetical protein; Provisional
Probab=84.32 E-value=2.4 Score=21.42 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=28.4
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2999979-0899999999997898599982885
Q gi|254780842|r 5 DVIIIGS-GLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
-|+|-|| =|.+|.+|..|++.|++|.+.|..+
T Consensus 6 tvLiTg~r~~~aL~laR~l~~~Gh~V~~aD~~~ 38 (387)
T PRK06849 6 TVLITGARAPAALQLARSFHNAGHTVILADSLK 38 (387)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 799958860789999999987899799984898
No 465
>PRK09422 alcohol dehydrogenase; Provisional
Probab=84.27 E-value=2.1 Score=21.85 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=7.5
Q ss_pred HCCCCEECCCCC
Q ss_conf 379421011001
Q gi|254780842|r 275 KKRVVLVGEAAH 286 (384)
Q Consensus 275 ~~rv~liGDAAH 286 (384)
.|+++++|-...
T Consensus 254 gG~~v~vG~~~~ 265 (338)
T PRK09422 254 GGRVVAVGLPPE 265 (338)
T ss_pred CCEEEEECCCCC
T ss_conf 999999877898
No 466
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=83.95 E-value=2.5 Score=21.30 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=11.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 99997-90899999999997898599982
Q gi|254780842|r 6 VIIIG-SGLAGSVAAIGAAKKGFLTALVS 33 (384)
Q Consensus 6 V~IvG-aG~aGl~lA~~L~~~g~~v~iiE 33 (384)
|+||| +.+.|.-+|.+|.+.|-.|++..
T Consensus 31 vvVvGrS~~VG~Pla~lL~~~~atVt~~h 59 (140)
T cd05212 31 VLVVGRSGIVGAPLQCLLQRDGATVYSCD 59 (140)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999981249999999997889899946
No 467
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=83.90 E-value=2.3 Score=21.55 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=30.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 29999790899999999997898599982885
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
.|+|||||=+|+-=|..|.+.|-+++|+-+..
T Consensus 14 ~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 14 KVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 79998998999999999974699799987874
No 468
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.65 E-value=3.1 Score=20.57 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=32.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCEEEECH
Q ss_conf 029999790899999999997898---599982885555783688878
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKGF---LTALVSPRSFLQDLRTTMLMG 48 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g~---~v~iiE~~~~~~~~r~~~l~~ 48 (384)
--|+|+|+|-+|+..|..|.+.|. ++.++|++-...+.|...+.+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~g~~~~~i~lvD~~GLl~~~r~d~~~~ 73 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNP 73 (226)
T ss_pred CEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 079998768999999999998277602679993678524788641449
No 469
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.65 E-value=2.3 Score=21.55 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCEEEEEEECCCH-HHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 9700299997908-99999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGL-AGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~-aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||. |+|-||+= .|..+|..|++.|.+|.+.+++.
T Consensus 1 MK~--vlITGassGIG~a~A~~~a~~G~~V~~~~r~~ 35 (258)
T PRK08267 1 MKS--IFITGAASGIGRATARLFAARGWRVGAYDINE 35 (258)
T ss_pred CCE--EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 998--99907226899999999998799999998889
No 470
>PRK12861 malic enzyme; Reviewed
Probab=83.63 E-value=2.6 Score=21.20 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=32.0
Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCE
Q ss_conf 0029999790899999999997898---5999828855557836
Q gi|254780842|r 3 HFDVIIIGSGLAGSVAAIGAAKKGF---LTALVSPRSFLQDLRT 43 (384)
Q Consensus 3 ~~DV~IvGaG~aGl~lA~~L~~~g~---~v~iiE~~~~~~~~r~ 43 (384)
..-|+|.|||-+|.+++.+|...|. +++++|++-.....|.
T Consensus 187 ~~kiv~~GaGaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~ 230 (762)
T PRK12861 187 EVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRT 230 (762)
T ss_pred HEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 61699968778899999999983999555899947785118986
No 471
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=83.59 E-value=1.9 Score=22.17 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCC--EEEEEECCC
Q ss_conf 9999790899999999997898--599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF--LTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~ 36 (384)
|+|||+|=.|.++|..|...++ +..++|-..
T Consensus 3 V~viGaG~VG~s~a~~l~~~~~~~el~LiDi~~ 35 (313)
T COG0039 3 VAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE 35 (313)
T ss_pred EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 999898747899999996255566599997466
No 472
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=83.40 E-value=2.5 Score=21.35 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=28.1
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 999979-0899999999997898599982885
Q gi|254780842|r 6 VIIIGS-GLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 6 V~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|+|.|| |..|..++..|.+.|++|+.+.+..
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~~ 32 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRPE 32 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 69964899899999999986899899954862
No 473
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=83.34 E-value=2.2 Score=21.63 Aligned_cols=33 Identities=30% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCEEEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790-899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSG-LAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG-~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|-||+ =.|..+|..|++.|.+|.+..++.
T Consensus 1 mn---VlITGas~GIG~aiA~~la~~Ga~V~i~~r~~ 34 (259)
T PRK08340 1 MN---VLVTASSRGIGFNVARELLKKGARVVISSRNE 34 (259)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98---99975877899999999998799999997998
No 474
>PRK08655 prephenate dehydrogenase; Provisional
Probab=83.16 E-value=2.6 Score=21.13 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=29.4
Q ss_pred CCEEEEEEE-CCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999-790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIII-GSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~Iv-GaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |.|| |.|=-|-.+|..|...|++|.|..|..
T Consensus 1 mk---I~IIGG~G~MG~~Fa~~f~~sGyeV~I~gRd~ 34 (441)
T PRK08655 1 MK---ISIIGGTGGLGKWFARFLKDKGYEVIVWGRDP 34 (441)
T ss_pred CE---EEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 97---99994798177999999986798899981573
No 475
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.12 E-value=2.3 Score=21.51 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=6.2
Q ss_pred EEEEEECCCCCCCCCCC
Q ss_conf 12353037543200037
Q gi|254780842|r 153 QFLIGSDGRNSSVRRQM 169 (384)
Q Consensus 153 dlvVgADG~~S~vR~~l 169 (384)
.++.-|=|-+..+-+.+
T Consensus 158 p~Iai~MGe~G~lSRiL 174 (477)
T PRK09310 158 NTTVLCMGNHGIPSRIL 174 (477)
T ss_pred CEEEEECCCCCEEEEEC
T ss_conf 86999717787021000
No 476
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=82.74 E-value=2.1 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=26.3
Q ss_pred CC-EEEEEEECC-CHHHHHHHHHHHHCCCE---EEEE
Q ss_conf 97-002999979-08999999999978985---9998
Q gi|254780842|r 1 MN-HFDVIIIGS-GLAGSVAAIGAAKKGFL---TALV 32 (384)
Q Consensus 1 M~-~~DV~IvGa-G~aGl~lA~~L~~~g~~---v~ii 32 (384)
|. +++|+|||| |.+|-.+-.+|.+++++ +.++
T Consensus 1 M~~~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~l 37 (336)
T PRK05671 1 MSQPLDIAVVGATGSVGEALVQVLEERDFPVGTLHLL 37 (336)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9988879999986499999999986369980269999
No 477
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=82.64 E-value=2.7 Score=21.04 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=30.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 2999979089999999999789859998288555
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~ 38 (384)
.|..||-|.-|...|..|.+.|+++.++++.+..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 0799857352599999999779878998088566
No 478
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=82.60 E-value=1.9 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=29.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 02999979089999999999789-8599982885
Q gi|254780842|r 4 FDVIIIGSGLAGSVAAIGAAKKG-FLTALVSPRS 36 (384)
Q Consensus 4 ~DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~ 36 (384)
..|+|-|||=+|.+|+..|+... ++|.++|.+.
T Consensus 116 ~~v~lFGAGHVG~ALv~~La~lP~~~~~WvD~Re 149 (270)
T TIGR02964 116 PHVVLFGAGHVGRALVRALAPLPECRVTWVDSRE 149 (270)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 8179986771888999986169957999863715
No 479
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=82.51 E-value=2.2 Score=21.67 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99997908999999999978985999828
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSP 34 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~ 34 (384)
|.|||+|--|.+++..|.+.|+++.+.-.
T Consensus 2 Ig~IG~G~mg~ai~~~l~~~g~~~~~~~~ 30 (93)
T pfam03807 2 IGIIGAGNMGEALARGLAAAGHEVIIANS 30 (93)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 89997009999999999977996127864
No 480
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=82.32 E-value=2.3 Score=21.55 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=32.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 999979089999999999789859998288555578368887
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLM 47 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~ 47 (384)
|+|-|+|=.....|..|.+.|++|++.|-..++.--|..+++
T Consensus 1 viVrG~gDiAsgva~~L~raGf~Vv~~e~~~P~~iRR~vaF~ 42 (256)
T TIGR03309 1 VVVRGAGDLATGVAHRLHRSGFKVLMTETEQPTVIRRTVAFA 42 (256)
T ss_pred CEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEE
T ss_conf 989157667877758866389679992489997265200711
No 481
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=82.14 E-value=2.8 Score=20.92 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=28.8
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 999979-08999999999978985999828855
Q gi|254780842|r 6 VIIIGS-GLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|.|| |-.|..++..|.+.|++|.++-|++.
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~Vr~l~R~~~ 33 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHPVRALVRDPK 33 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 099896828999999999858993899971873
No 482
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=81.82 E-value=0.5 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEECCCHHHHHHHHHHHHC----CCEEEEEECCC
Q ss_conf 99997908999999999978----98599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKK----GFLTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~----g~~v~iiE~~~ 36 (384)
+-|||+|+|||++|..|-|- |-++.|+|.-+
T Consensus 25 aY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelp 59 (587)
T COG4716 25 AYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELP 59 (587)
T ss_pred EEEECCCHHHHHHEEEEEECCCCCCCEEEEEECCC
T ss_conf 58975446744423478852665774567630275
No 483
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=81.58 E-value=1.2 Score=23.52 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=26.8
Q ss_pred EECCCHHHHHHHHHHHHCCC--EEEEEECCCC
Q ss_conf 99790899999999997898--5999828855
Q gi|254780842|r 8 IIGSGLAGSVAAIGAAKKGF--LTALVSPRSF 37 (384)
Q Consensus 8 IvGaG~aGl~lA~~L~~~g~--~v~iiE~~~~ 37 (384)
|||+|-+|.++|.+|...|+ ++.|+|-.+.
T Consensus 1 iiG~G~VGss~A~a~~~~g~a~E~vliDin~~ 32 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGLADEIVLIDINKD 32 (302)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 91148618999999973150318878834757
No 484
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=81.38 E-value=3.6 Score=20.15 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=29.0
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908-----------999999999978985999828855
Q gi|254780842|r 6 VIIIGSGL-----------AGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~-----------aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|+|+|| +|.-++.+|...|++|+++..++.
T Consensus 10 vLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~Npa 52 (1063)
T PRK05294 10 ILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPA 52 (1063)
T ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9998988251037233265699999999986998999879854
No 485
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=80.96 E-value=3 Score=20.75 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=18.1
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Q ss_conf 2999979089999999999789-859998288
Q gi|254780842|r 5 DVIIIGSGLAGSVAAIGAAKKG-FLTALVSPR 35 (384)
Q Consensus 5 DV~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~ 35 (384)
.|+|||||=-|...|..|.++| -+++|+-|.
T Consensus 187 ~~LliGAGeMg~Lva~~L~~~~v~~~~i~NRt 218 (436)
T TIGR01035 187 KVLLIGAGEMGELVAKHLREKGVGKVLIANRT 218 (436)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 18998274579999999964895289885567
No 486
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=80.85 E-value=3.1 Score=20.59 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=10.9
Q ss_pred HHCCCCHHHHHHHHHHHHHH
Q ss_conf 86367989999999999998
Q gi|254780842|r 345 SLFSRYPLLQILRAGTFHLL 364 (384)
Q Consensus 345 ~~~~~~~~~~~~R~~~l~~~ 364 (384)
+|....|+...+|.....++
T Consensus 263 lwtG~~~~~~~mr~~~~~~~ 282 (284)
T PRK12549 263 LFTGREPDAERMRAHFASLV 282 (284)
T ss_pred HHCCCCCCHHHHHHHHHHHH
T ss_conf 97099999999999999986
No 487
>CHL00194 ycf39 Ycf39; Provisional
Probab=80.64 E-value=3.6 Score=20.14 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCEEEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 97002999979-08999999999978985999828855
Q gi|254780842|r 1 MNHFDVIIIGS-GLAGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 1 M~~~DV~IvGa-G~aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+ |+|+|| |-.|-.+...|...|++|.++-|++.
T Consensus 1 M~---ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ 35 (319)
T CHL00194 1 MS---LLVIGATGTLGRQIVRRALDEGYQVKCLVRNLR 35 (319)
T ss_pred CE---EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 97---999899858999999999968890899957867
No 488
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=80.50 E-value=3.4 Score=20.27 Aligned_cols=32 Identities=31% Similarity=0.630 Sum_probs=29.1
Q ss_pred EEEECCCH-----------HHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 99997908-----------999999999978985999828855
Q gi|254780842|r 6 VIIIGSGL-----------AGSVAAIGAAKKGFLTALVSPRSF 37 (384)
Q Consensus 6 V~IvGaG~-----------aGl~lA~~L~~~g~~v~iiE~~~~ 37 (384)
|+|+|+|| +|.-++.+|...|++|+++..++.
T Consensus 10 vLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPa 52 (1068)
T PRK12815 10 ILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPA 52 (1068)
T ss_pred EEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9998988153123446565699999999986998999889832
No 489
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB; InterPro: IPR012730 This entry describes the molybdopterin biosynthesis protein MoeB in Escherichia coli and related species. MoeB and MoaD are involved in molybdenum cofactor biosynthesis, an evolutionarily conserved pathway. The MoeB enzyme covalently modifies the molybdopterin synthase MoaD by sulphurylation. The crystal structure of the complex between the E. coli MoeB and MoaD proteins reveals a MoeB(2)-MoaD(2) heterotetramer in which the MoeB subunits form a mainly hydrophobic dimer . MoeB is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (IPR000594 from INTERPRO). ; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=80.32 E-value=2.3 Score=21.55 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=30.4
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 70029999790899999999997898-599982885
Q gi|254780842|r 2 NHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 2 ~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
|.-.|+|||.|=-|++++-+|+-+|+ +.+++|-..
T Consensus 23 K~s~vLivG~GGLGCAa~QYLa~AGvG~l~L~DfD~ 58 (240)
T TIGR02355 23 KASKVLIVGLGGLGCAASQYLAAAGVGRLTLVDFDT 58 (240)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 005677783670345678888643663278863371
No 490
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=79.83 E-value=4.2 Score=19.63 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHCCC
Q ss_conf 9999999999789859998288555578368887889999998899
Q gi|254780842|r 14 AGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINV 59 (384)
Q Consensus 14 aGl~lA~~L~~~g~~v~iiE~~~~~~~~r~~~l~~~s~~~L~~lGl 59 (384)
.|...|+.+++.|++|++-|++... +++..++..+.-|+
T Consensus 31 GGs~MAiefA~AGHDVvLaePn~~~-------lsee~w~~VEdAgV 69 (341)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNKSM-------LSDEQWKRVEDAGV 69 (341)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCC-------CCHHHHHHHHHCCC
T ss_conf 7049999999757847973576231-------69899999997496
No 491
>PRK05599 hypothetical protein; Provisional
Probab=79.08 E-value=3.4 Score=20.28 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCEEEEEEECC--CHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 97002999979--0899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGS--GLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGa--G~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|+ |+|.|| || |..+|..|+ .|.++++.-|+.
T Consensus 1 Mt---vlITGASsGI-G~a~A~~lA-~G~~vvl~~R~~ 33 (246)
T PRK05599 1 MS---ILILGGTSDI-AGEIATLLA-HGEDVVLAARRP 33 (246)
T ss_pred CE---EEEECCCHHH-HHHHHHHHH-CCCCEEEEECCH
T ss_conf 98---9998886899-999999998-599499999999
No 492
>PRK08643 acetoin reductase; Validated
Probab=78.92 E-value=4.5 Score=19.43 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
||+.=++-=|++=-|..+|..|++.|.+|.+.+++.
T Consensus 1 mnKvalVTGg~~GIG~aia~~la~~Ga~V~i~d~~~ 36 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 984999957578899999999998799999996988
No 493
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.70 E-value=4.2 Score=19.67 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCC-CEEEEEECCC
Q ss_conf 999979089999999999789-8599982885
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKG-FLTALVSPRS 36 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g-~~v~iiE~~~ 36 (384)
++|+|+|=++-+.+..|.+.| -+++|+.|..
T Consensus 125 ~lilGaGGaarai~~aL~~~G~~~i~I~nR~~ 156 (272)
T PRK12550 125 VALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 89973623389999999976998799998998
No 494
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.63 E-value=4.1 Score=19.75 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf 9999790899999999997898-599982
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVS 33 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE 33 (384)
|+|||+|=-|+-++..|+..|+ ++.|+|
T Consensus 2 vlvvG~GglG~e~~k~la~~Gvg~i~ivD 30 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVID 30 (291)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 89992888899999999984898599973
No 495
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.59 E-value=4.4 Score=19.47 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Q ss_conf 9999790899999999997898-59998288
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGF-LTALVSPR 35 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~ 35 (384)
|+|||+|=.|-.+|..|...|. +++|.-|.
T Consensus 185 vlviGaGem~~l~~k~L~~~g~~~i~v~nRt 215 (429)
T PRK00045 185 VLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (429)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9997674899999999985599849997586
No 496
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=78.33 E-value=4.3 Score=19.57 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99997908999999999978985999828
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSP 34 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~iiE~ 34 (384)
|-|||.|-.|..+|..|.-.|++|..+++
T Consensus 119 vGIIG~G~IG~~va~~l~afG~~vl~~DP 147 (379)
T PRK00257 119 YGIVGVGHVGGRLVRVLRGLGWKVLVCDP 147 (379)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99977167999999999977998999784
No 497
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=77.97 E-value=2.2 Score=21.69 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=0.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 999979089999999999789859998
Q gi|254780842|r 6 VIIIGSGLAGSVAAIGAAKKGFLTALV 32 (384)
Q Consensus 6 V~IvGaG~aGl~lA~~L~~~g~~v~ii 32 (384)
|+|+|=|==|...|+.|||.|+.-+++
T Consensus 24 VAicGlGGLGS~~AinLAR~GigkLiL 50 (200)
T TIGR02354 24 VAICGLGGLGSNVAINLARAGIGKLIL 50 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 789701611689999998730220256
No 498
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=77.83 E-value=4.8 Score=19.21 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCEEEEEEECCC------HHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 970029999790------899999999997898599982885
Q gi|254780842|r 1 MNHFDVIIIGSG------LAGSVAAIGAAKKGFLTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG------~aGl~lA~~L~~~g~~v~iiE~~~ 36 (384)
|| |+|.|=| +++++++.++++.|.+|+++|..+
T Consensus 1 mk---IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MK---IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CE---EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 96---9996599765899999999999864895499994899
No 499
>KOG2305 consensus
Probab=77.62 E-value=2.4 Score=21.37 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 970029999790899999999997898599982
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~~v~iiE 33 (384)
|---.|.|||.|.+|-.-|..++-.|++|.++|
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYD 33 (313)
T KOG2305 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYD 33 (313)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEE
T ss_conf 986504676232312259999860672699762
No 500
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=77.36 E-value=3.3 Score=20.41 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 970029999790899999999997898-599982885
Q gi|254780842|r 1 MNHFDVIIIGSGLAGSVAAIGAAKKGF-LTALVSPRS 36 (384)
Q Consensus 1 M~~~DV~IvGaG~aGl~lA~~L~~~g~-~v~iiE~~~ 36 (384)
|.+-.|+|+|.|..|.=.|--|.-.|+ .++|+|...
T Consensus 18 l~~s~VLiiG~~glG~EiaKNLvLaGV~svti~D~~~ 54 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9769399999971199999872132897699995991
Done!