HHsearch alignment for GI: 254780842 and conserved domain: pfam08491

>pfam08491 SE Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus.
Probab=99.59  E-value=8.6e-15  Score=127.50  Aligned_cols=212  Identities=14%  Similarity=0.128  Sum_probs=139.4

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEE--ECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHH
Q ss_conf             111235303754320003787332222430478764--114788611788722787542100012320112675075673
Q gi|254780842|r  151 VGQFLIGSDGRNSSVRRQMGYGENKWSYPQKALVLN--FQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEA  228 (384)
Q Consensus       151 ~adlvVgADG~~S~vR~~l~~~~~~~~y~~~~l~~~--~~~~~~~~~~a~~~f~~~G~~a~lP~~~~~~~ivw~~~~~~~  228 (384)
T Consensus         1 fApLtvv~DG~~S~fRk~l~~~~~~v--~S~-FvGl~l~~~~lp~p~hGhViL~~~~PvL~YqIs~~etR~Lvdv~~~~l   77 (276)
T pfam08491         1 FAPLTIVCDGCFSKFRKSLSDNKVEV--GSY-FVGLILKNADLPAPNHGHVILGKPSPILLYQISSTETRILCDYPGPKL   77 (276)
T ss_pred             CCCEEEEECCCCHHHHHHHCCCCCCE--EEE-EEEEEECCCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf             99869981685058788734899963--016-899997178899988048996699868999728983689995378889


Q ss_pred             HHHHHHHHHHHHHHHHH----CCCCCCCC-C-C--CCEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHH
Q ss_conf             24553223467887763----06754676-2-1--110223202233430456537942101100113844565321121
Q gi|254780842|r  229 DFYYKLPVNEIARRLEQ----YLYPVIGK-I-E--VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM  300 (384)
Q Consensus       229 ~~~~~~~~~~~~~~l~~----~~~~~~~~-~-~--~~~~~~~~pl~~~~~~~~~~~rv~liGDAAH~~~P~~GqG~n~ai  300 (384)
T Consensus        78 P---s~~ng~~~~yl~~~v~P~lP~~lr~~f~~Al~~g~iRsMPn~~lp~~~~~~~G~illGDA~NmRHPLTGgGMTVal  154 (276)
T pfam08491        78 P---SIANGELKEYLKTSVAPQIPKELRPSFLAALDEGKIRSMPNSFLPASKNRKKGLILLGDALNMRHPLTGGGMTVAL  154 (276)
T ss_pred             C---CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCCCCCCCCEEEEH
T ss_conf             9---8664168999997146679888999999999659924475021888767998789971110588985576667642


Q ss_pred             HHHHHHHHHHHCCCC--CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf             238999999852579--90---799999999867999999999999999863679899999999999985083
Q gi|254780842|r  301 RDVIILLNLFQSEHM--SF---RAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGTFHLLKRVT  368 (384)
Q Consensus       301 ~Da~~L~~~l~~~~~--~~---~~~l~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~  368 (384)
T Consensus       155 ~Dvv~L~~lL~~~~dl~d~~~v~~~l~~F~~~Rk~~~s~IN~LA~ALY~lF~a~~~~l~~Lr~gcF~Yf~~GG  227 (276)
T pfam08491       155 NDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRKPYDAVINTLSIALYSLFAADSDELKALRKGCFDYFSLGG  227 (276)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             0899999863778885217999999999988625540879999999999984897799999999999997187