RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter asiaticus str. psy62] (384 letters) >gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]. Length = 387 Score = 225 bits (574), Expect = 2e-59 Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 13/388 (3%) Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALV--SPRSFLQDLRTTMLMGEGIDFLKEINVW 60 DV I+G+G AG A+ A+ G L+ +PR L+ R L + L+ + +W Sbjct: 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLW 61 Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120 D L+ + P +VD R + IF ++E+G A GY +P L+ + E Sbjct: 62 DRLEALGVPPLHVMVVDDGGRRLL----IFDAAELGRGALGYVVPRSDLLNALLEAARAL 117 Query: 121 PLIHC-FDALANEIQIGEEEVTILLST-GQQIVGQFLIGSDGRNSSVRRQMGYGENKWS- 177 P + F A ++ + VT+ LS G+ + L+G+DG NS+VRR G E Sbjct: 118 PNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRD 177 Query: 178 YPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVN 237 Y Q ALV N + PH GR E G +PL +N SS+VW + A+ L Sbjct: 178 YGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE 237 Query: 238 EIARRLEQYL--YPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295 E R L++ L +G++ +V+ F LS ++ + + RVVL+G+AAHA+ P+ GQG Sbjct: 238 EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQG 297 Query: 296 LNLSMRDVIILLNLFQSEHMSFR--AIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLL 353 NL++ D L + A Y A RR + R + P Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFA 357 Query: 354 QILRAGTFHLLKRVTPLRHQVMRQSLFL 381 + LR LL R+ PLR + R + L Sbjct: 358 RFLRNLGLRLLDRLPPLREALARLAAGL 385 >gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism, Energy production and conversion]. Length = 481 Score = 89.3 bits (221), Expect = 2e-18 Identities = 98/452 (21%), Positives = 153/452 (33%), Gaps = 90/452 (19%) Query: 3 HFDVIIIGSGLAGS--VAAIGAA------KKGFLTALVSPRSFLQDL------RTTMLMG 48 +DV+I+G G G AA+G+ K L A SP+ R + + Sbjct: 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISP 95 Query: 49 EGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHV 108 I K I WD + F + + D A I + + I N Sbjct: 96 ASISLFKSIGAWDHIFHDR--YQKFSRMLVWDSCSAA--LILFDHDNVGIDMAFIIENDN 151 Query: 109 LMESF--AEKISQDPLIHCFDALANEIQIGEEEVT----------ILLSTGQQIVGQFLI 156 + S ++ S+ + + +A I E I L+ G LI Sbjct: 152 IQCSLYNSQLDSESDNVTVIN-MAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLI 210 Query: 157 GSDGRNSSVRRQMGYGENKWSYPQKALV--LNFQHSMPHNGRCVEFHKSLGTITQIPLRE 214 G+DG NS VR+ W+Y Q A+V L + NG + G I +PL + Sbjct: 211 GADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270 Query: 215 NFSSLVWIMESQEA--------------------------DFYYKLPV------------ 236 SSLVW + A + Sbjct: 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESL 330 Query: 237 -NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295 N R Q P + ++ + Q F L + + RV L+G+AAH + P+ GQG Sbjct: 331 LNTSKRLANQQYPPSVFEVGDKSRAQ-FPLGFGHADEYVTDRVALIGDAAHRVHPLAGQG 389 Query: 296 LNLSMRDVIIL-----------LNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNR 344 +NL DV IL L+L EH+ Y R + D ++ Sbjct: 390 VNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEP------YERERLQHNYVLLGAVDKLHK 443 Query: 345 SLFSRYPLLQILRAGTFHLLKRVTPLRHQVMR 376 + P + +LR L + P+++ +M Sbjct: 444 LYATSAPPVVLLRTFGLQLTNALAPVKNFIMV 475 >gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion, General function prediction only]. Length = 420 Score = 80.8 bits (199), Expect = 6e-16 Identities = 74/381 (19%), Positives = 128/381 (33%), Gaps = 36/381 (9%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM----LMGEGIDFLKEINVW 60 V+I+G G+ G A+ +KG ++ +D R L G LK I + Sbjct: 4 KVVIVGGGIVGLATALALHRKGIDVVVLE---SREDPRGEGTSINLALNGWRALKAIGLK 60 Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120 + +++ P+ L+ + E L N+ +L E+ + Sbjct: 61 EQIREQGIPLGGRVLIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKF 120 Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180 + EI+ +++ + LS G + G LIG DG S VR+ +G+ E ++ Q Sbjct: 121 HSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQ 180 Query: 181 KALVLNF-QHSMPHNGR-----CVEFHKSLGTITQIPLRENFS-SLVWIMESQEADFYYK 233 L F + +P + H + SL + + Sbjct: 181 AYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL 240 Query: 234 LP-VNEIARRLEQYLYPVIGKIE----VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHAL 288 E+ + +I V T + +IS VVL+G+AAHA+ Sbjct: 241 KKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAM 300 Query: 289 PPICGQGLNLSMRDVIILLNLFQS----------------EHMSFRAIGNR-YHAMRRGD 331 P GQG N + D ++L E + + Y R Sbjct: 301 TPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRR 360 Query: 332 IIKRIVGTDLFNRSLFSRYPL 352 +++ V L S PL Sbjct: 361 LLRLKVDAYLVGILPQSFGPL 381 >gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]. Length = 396 Score = 69.8 bits (170), Expect = 1e-12 Identities = 69/370 (18%), Positives = 134/370 (36%), Gaps = 37/370 (10%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDF--LKEIN 58 M +DV+I+G+G AGS AA AK G ++ S G G+ L+E+ Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE---PGAKPCCGGGLSPRALEELI 57 Query: 59 VWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118 DF ++I V+ R+ +++ GY + + AE+ Sbjct: 58 -PDFDEEIERKVTGARIYFPGEKVAIEVP----------VGEGYIVDRAKFDKWLAERAE 106 Query: 119 QDPLIHCFDALANEIQIGEEEVTILLSTGQQIV-GQFLIGSDGRNSSVRRQMGYGENKWS 177 + + ++ V + + G V + +I +DG NS++ R++G K Sbjct: 107 EAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLG---LKDR 163 Query: 178 YPQKALVLNFQH-SMPHNGRCVEFH------KSLGTITQIPLRENFSSLVWIMESQEADF 230 P+ + + +P +G EF G PL + +++ + D Sbjct: 164 KPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLL---DD 220 Query: 231 YYKLPVNEIARRLEQYLYP---VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHA 287 P E+ R +++ ++G + G S V+LVG+AA Sbjct: 221 PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGF 280 Query: 288 LPPICGQGLNLSMRDVII----LLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFN 343 + P+ G+G+ +++ + + + + + +K + L Sbjct: 281 VNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLL 340 Query: 344 RSLFSRYPLL 353 R L P L Sbjct: 341 RLLDRTLPAL 350 >gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is involved in FAD binding in a number of enzymes. Length = 349 Score = 57.3 bits (139), Expect = 7e-09 Identities = 65/334 (19%), Positives = 112/334 (33%), Gaps = 60/334 (17%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVS--------PRSFLQDLRTTMLMGEGIDFLKE 56 DV+I+G G AG + A+ A+ G LV PR+ + RT ++ L++ Sbjct: 3 DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRT-------MELLRQ 55 Query: 57 INVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDA-FGY----NIPNH---- 107 + D + +AE + LD P Sbjct: 56 AGLEDRI--LAEGAPHEG---MGLAFYNTSRR-----RADLDFLTSPPRVTVYPQTELEP 105 Query: 108 VLMESFAEKISQDPLIHCFDA-LANEIQIGEEEVTILL----STGQQIVGQFLIGSDGRN 162 +L E AE F + + Q G+ ++ + ++L+G DG Sbjct: 106 ILREH-AEARGAQVR---FGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGR 161 Query: 163 SSVRRQMGY---GENKW---SYPQKALVLNFQHSMP-HNGRCVEFHKSLGTITQIPLREN 215 S VR+Q+G G S + + + + P R Sbjct: 162 SPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSA 221 Query: 216 FSSLVWIMESQEADFYYKL---PVNEIARRLEQYLYPVIGKIEVVTD---VQIFQLSGMI 269 S ++ + ++ P +Q L +G + I+ + + Sbjct: 222 GRSRYYVQ----VPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSIWGVRSRV 277 Query: 270 SHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDV 303 + + K RV L G+AAH PP GQGLN ++D Sbjct: 278 ATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDA 311 >gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]. Length = 454 Score = 48.3 bits (115), Expect = 4e-06 Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 M +DV++IG+G AG VAAI AA+ G ALV L Sbjct: 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39 >gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 Score = 46.1 bits (110), Expect = 1e-05 Identities = 16/29 (55%), Positives = 21/29 (72%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 DV++IGSGLAG AA+ AA+ G A+V Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29 >gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. Length = 391 Score = 44.1 bits (105), Expect = 6e-05 Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV 32 DVI+IG G AG AA+ AA+ G L+ Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI 28 >gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]. Length = 562 Score = 43.8 bits (103), Expect = 8e-05 Identities = 17/30 (56%), Positives = 21/30 (70%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33 FDV++IG G AG AAI AA+ G AL+S Sbjct: 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36 >gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy production and conversion]. Length = 506 Score = 42.6 bits (100), Expect = 2e-04 Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 2 NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 N +DV++IG G G VAAI AA+ G TA V R L Sbjct: 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 >gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]. Length = 520 Score = 40.7 bits (95), Expect = 7e-04 Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRT 43 +DV+++G G AG+ AAI AA+KG T LV+ R Q L T Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDT 251 >gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport and metabolism]. Length = 509 Score = 39.9 bits (93), Expect = 0.001 Identities = 69/328 (21%), Positives = 137/328 (41%), Gaps = 34/328 (10%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGE-----GIDFLKEINV 59 DVII+G+G+AGS A AK G V R + R ++GE G L ++ + Sbjct: 47 DVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSEPDR---IVGELLQPGGYLALSKLGL 102 Query: 60 WDFLQDI-AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118 D ++ I A+ V+ + + + + P + D G + N ++ +K + Sbjct: 103 EDCVEGIDAQRVTGYAIFK-DGKEVDLP---YPLKNFPSDPSGRSFHNGRFVQRLRKKAA 158 Query: 119 QDPLIHCFDALANEIQIGEEE-----VTILLSTGQQI--VGQFLIGSDGRNSSVRRQMGY 171 P + + + EEE VT G+++ + DG S++RR + Sbjct: 159 SLPNVRLEEGTVKSLL--EEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD 216 Query: 172 GENKW--SYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIP------LRENFSSLVWIM 223 + + SY ++ N + P++G + S + QI L + + + Sbjct: 217 PKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSI 276 Query: 224 ESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGE 283 + E Y K +A ++ + L + +++ S M + KK V+L+G+ Sbjct: 277 ANGEMATYMK---ESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGD 333 Query: 284 AAHALPPICGQGLNLSMRDVIILLNLFQ 311 A + P+ G G+ +++ D+++L L + Sbjct: 334 AFNMRHPLTGGGMTVALSDIVLLRRLLK 361 >gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]. Length = 421 Score = 39.1 bits (91), Expect = 0.002 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 10/112 (8%) Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR-------SFLQDLRTTMLMGEGIDFLK 55 +FDV IIG GLAG + + G A+V+ S DL + G+ + + Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLPDGQAVTDIH 61 Query: 56 EINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNH 107 + D L+ A P + LV L A A E GL G NH Sbjct: 62 D--GLDALRQQA-PAHPYSLVGAQKVLDLAQQAEALLDESGLQLQGSVEANH 110 >gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell division [Cell division and chromosome partitioning]. Length = 621 Score = 39.0 bits (91), Expect = 0.002 Identities = 15/32 (46%), Positives = 20/32 (62%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 +DVI+IG G AG AA+ AA+ G T L+ Sbjct: 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33 >gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function prediction only]. Length = 408 Score = 38.2 bits (89), Expect = 0.003 Identities = 19/32 (59%), Positives = 21/32 (65%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 M FDVIIIG G AG +AAI AAK G L+ Sbjct: 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLI 32 >gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 305 Score = 38.0 bits (88), Expect = 0.004 Identities = 17/32 (53%), Positives = 20/32 (62%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 M +DVIIIG G AG AAI AA+ G L+ Sbjct: 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32 >gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 487 Score = 37.4 bits (86), Expect = 0.008 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 M +DV++IG+GL G AA A+ G ++ Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVL 32 >gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 680 Score = 36.5 bits (84), Expect = 0.013 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL--RTTMLMGEGIDFLKEINVWD 61 FDV+IIG G G+ A+ AA +G TALV F ++T L+ G+ +L E + + Sbjct: 68 FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL-EKAISN 126 Query: 62 FLQDIAEPVSSFRLV 76 D + +RLV Sbjct: 127 L--DYEQ----YRLV 135 >gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]. Length = 387 Score = 36.0 bits (82), Expect = 0.017 Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 DV+IIG G+ G AA A++G ++ Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVL 33 >gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 35.6 bits (82), Expect = 0.022 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-------QDLRTTMLM---GEGIDF 53 FD +I+G+GL+G+V A AA+ G +V R+ + D +T +L+ G I Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH 61 Query: 54 LKEINVWDFLQDIAE 68 VWD++ E Sbjct: 62 TDNKRVWDYVNQFTE 76 >gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]. Length = 679 Score = 35.3 bits (81), Expect = 0.026 Identities = 14/33 (42%), Positives = 20/33 (60%) Query: 3 HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35 +DV++IG G AG AA AA+ G T L++ Sbjct: 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 >gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. Length = 405 Score = 35.2 bits (82), Expect = 0.032 Identities = 16/29 (55%), Positives = 21/29 (72%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 +DVI+IG G AG +AAI AAK+G L+ Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLI 29 >gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]. Length = 622 Score = 33.8 bits (77), Expect = 0.073 Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 V++IG G+AG AA+ A GF LV + Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 >gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]. Length = 542 Score = 33.9 bits (77), Expect = 0.074 Identities = 11/26 (42%), Positives = 15/26 (57%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKG 26 +D +I+GSG AGSV A + G Sbjct: 5 KMEYDYVIVGSGSAGSVLAARLSDAG 30 >gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 309 Score = 33.9 bits (78), Expect = 0.083 Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 DV++IG G+ G A A++G L+ Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDL 33 >gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 532 Score = 33.0 bits (75), Expect = 0.15 Identities = 16/37 (43%), Positives = 20/37 (54%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 M FDVI+IG G+ G+ A AA +G ALV Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDL 46 >gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism]. Length = 518 Score = 32.5 bits (74), Expect = 0.21 Identities = 14/24 (58%), Positives = 16/24 (66%) Query: 2 NHFDVIIIGSGLAGSVAAIGAAKK 25 H DV+IIGSGLAG AA+ A Sbjct: 6 EHPDVLIIGSGLAGLTAALSLAPS 29 >gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]. Length = 552 Score = 32.3 bits (73), Expect = 0.22 Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 DVI++G+GLAG VAA A G ++ Sbjct: 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLIL 34 >gnl|CDD|31399 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]. Length = 439 Score = 32.1 bits (73), Expect = 0.26 Identities = 13/26 (50%), Positives = 17/26 (65%) Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKG 26 M + +IG+GLAGS AA AK+G Sbjct: 1 MMQQPINVIGAGLAGSEAAWQIAKRG 26 >gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis [Coenzyme metabolism]. Length = 262 Score = 31.0 bits (70), Expect = 0.60 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL--------QDLRTTMLMGEGIDFLKE 56 DVII+G+G +G AA AK G A+ + ++ E + L E Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDE 91 Query: 57 INV 59 + Sbjct: 92 FGI 94 >gnl|CDD|34560 COG4952, COG4952, Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]. Length = 430 Score = 30.4 bits (68), Expect = 0.94 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%) Query: 188 QHSMPHNGRCVEFHKSLGTI---------TQIPLRENFSSLVWIMESQEADFYYKLPVNE 238 + ++ HN CVE K+LG+ + P + NF+ Y LP + Sbjct: 155 RQAIEHNLECVEIGKALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYAALPADW 214 Query: 239 IARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNL 298 + P T VQ + + +I+ G++ LV HA N+ Sbjct: 215 RLFTEHKMFEPAF----YSTVVQDWGTNYLIAEELGERAFCLVDLGHHA------PNTNI 264 Query: 299 SM 300 M Sbjct: 265 EM 266 >gnl|CDD|37242 KOG2031, KOG2031, KOG2031, Tyrosyl-DNA phosphodiesterase [Replication, recombination and repair]. Length = 519 Score = 30.4 bits (68), Expect = 0.96 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 13/100 (13%) Query: 32 VSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFH 91 VSP F QDL I++L L++ + I R I + F Sbjct: 224 VSPTGFKQDL---------IEYLNSYR-LPQLKEWIASLKKVDFSAINVRFIGSTPGKFQ 273 Query: 92 SSEIGLDAFGYNIPNHVLMESFAEKISQD-PLIHCFDALA 130 S L ++G+N +L E A + P++ ++ Sbjct: 274 GSG--LLSWGHNKLKKILKEHAASPYLERTPVVGQSSSIG 311 >gnl|CDD|39606 KOG4405, KOG4405, KOG4405, GDP dissociation inhibitor [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]. Length = 547 Score = 30.0 bits (67), Expect = 1.2 Identities = 10/34 (29%), Positives = 18/34 (52%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37 FDV++IG+GL S+ A ++ G + + Sbjct: 9 FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY 42 >gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Length = 229 Score = 29.3 bits (66), Expect = 1.8 Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALV 32 DV+I+G+G +G AA AKKG A++ Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAII 46 >gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General function prediction only]. Length = 399 Score = 28.8 bits (64), Expect = 2.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32 DVII+G+G+ G A AK+G L+ Sbjct: 8 RDVIIVGAGVFGLSTAYELAKRGDKILLL 36 >gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]. Length = 389 Score = 28.7 bits (64), Expect = 2.5 Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFL 54 +++IG+G GSV A A+ G ++ RS + R L+G ++ L Sbjct: 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEAL 52 >gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]. Length = 443 Score = 28.5 bits (63), Expect = 2.8 Identities = 10/20 (50%), Positives = 12/20 (60%) Query: 1 MNHFDVIIIGSGLAGSVAAI 20 H DV IIG+G +G AA Sbjct: 6 ATHTDVAIIGAGQSGLAAAY 25 >gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]. Length = 623 Score = 28.8 bits (64), Expect = 3.0 Identities = 8/18 (44%), Positives = 12/18 (66%) Query: 2 NHFDVIIIGSGLAGSVAA 19 + +D I++G G AG V A Sbjct: 56 SSYDYIVVGGGTAGCVLA 73 >gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 501 Score = 28.0 bits (62), Expect = 4.2 Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 4 FDVIIIGSGLAGSVAA 19 VI+IG+GLAG AA Sbjct: 16 KKVIVIGAGLAGLSAA 31 >gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]. Length = 485 Score = 28.0 bits (62), Expect = 5.1 Identities = 14/33 (42%), Positives = 16/33 (48%) Query: 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38 V I G+GLAG AA A G+ L R L Sbjct: 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 >gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]. Length = 450 Score = 27.6 bits (61), Expect = 6.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGF 27 DVII+G+GLAG AA K G+ Sbjct: 9 DVIIVGAGLAGLSAAYELKKAGY 31 >gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport and metabolism]. Length = 2142 Score = 27.6 bits (61), Expect = 6.2 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 19/74 (25%) Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS------------------FLQDLRTTM 45 V IIGSG AG AA K G T V RS F+ R + Sbjct: 1786 KRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844 Query: 46 LMGEGIDFLKEINV 59 L EGI F+ + Sbjct: 1845 LEQEGIRFVTNTEI 1858 >gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]. Length = 331 Score = 27.6 bits (61), Expect = 6.3 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%) Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36 + I+G+G+AG AA + G V + Sbjct: 3 SIAIVGAGIAGLAAAYALREAG-REVTVFEKG 33 >gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 322 Score = 27.3 bits (60), Expect = 8.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 3 HFDVIIIGSGLAGSVAAIGAAKK 25 + +V+IIGSG A AAI AA+ Sbjct: 8 NENVVIIGSGPAAHTAAIYAARA 30 >gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function unknown]. Length = 402 Score = 26.8 bits (59), Expect = 9.5 Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 40 DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSE 94 LR++++ G + + D L++I E S R VD+ +L P E Sbjct: 92 KLRSSLVRGSRRVRVDDAREPDLLEEIQEAALSDRPVDVEAQLRRKPSGRLSFDE 146 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.141 0.416 Gapped Lambda K H 0.267 0.0779 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,788,521 Number of extensions: 261402 Number of successful extensions: 832 Number of sequences better than 10.0: 1 Number of HSP's gapped: 817 Number of HSP's successfully gapped: 61 Length of query: 384 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 288 Effective length of database: 4,189,273 Effective search space: 1206510624 Effective search space used: 1206510624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.0 bits)