RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl
hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
         (384 letters)



>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
           FAD-dependent oxidoreductases [Coenzyme metabolism /
           Energy production and conversion].
          Length = 387

 Score =  225 bits (574), Expect = 2e-59
 Identities = 117/388 (30%), Positives = 178/388 (45%), Gaps = 13/388 (3%)

Query: 3   HFDVIIIGSGLAGSVAAIGAAKKGFLTALV--SPRSFLQDLRTTMLMGEGIDFLKEINVW 60
             DV I+G+G AG   A+  A+ G    L+  +PR  L+  R   L    +  L+ + +W
Sbjct: 2   MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLW 61

Query: 61  DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
           D L+ +  P     +VD   R +     IF ++E+G  A GY +P   L+ +  E     
Sbjct: 62  DRLEALGVPPLHVMVVDDGGRRLL----IFDAAELGRGALGYVVPRSDLLNALLEAARAL 117

Query: 121 PLIHC-FDALANEIQIGEEEVTILLST-GQQIVGQFLIGSDGRNSSVRRQMGYGENKWS- 177
           P +   F A    ++   + VT+ LS  G+ +    L+G+DG NS+VRR  G  E     
Sbjct: 118 PNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRD 177

Query: 178 YPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVN 237
           Y Q ALV N +   PH GR  E     G    +PL +N SS+VW +    A+    L   
Sbjct: 178 YGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE 237

Query: 238 EIARRLEQYL--YPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295
           E  R L++ L     +G++ +V+    F LS  ++  + + RVVL+G+AAHA+ P+ GQG
Sbjct: 238 EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQG 297

Query: 296 LNLSMRDVIILLNLFQSEHMSFR--AIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLL 353
            NL++ D   L     +        A    Y A RR         +    R   +  P  
Sbjct: 298 ANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFA 357

Query: 354 QILRAGTFHLLKRVTPLRHQVMRQSLFL 381
           + LR     LL R+ PLR  + R +  L
Sbjct: 358 RFLRNLGLRLLDRLPPLREALARLAAGL 385


>gnl|CDD|39059 KOG3855, KOG3855, KOG3855, Monooxygenase involved in coenzyme Q
           (ubiquinone) biosynthesis [Coenzyme transport and
           metabolism, Energy production and conversion].
          Length = 481

 Score = 89.3 bits (221), Expect = 2e-18
 Identities = 98/452 (21%), Positives = 153/452 (33%), Gaps = 90/452 (19%)

Query: 3   HFDVIIIGSGLAGS--VAAIGAA------KKGFLTALVSPRSFLQDL------RTTMLMG 48
            +DV+I+G G  G    AA+G+       K   L A  SP+            R + +  
Sbjct: 36  KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISP 95

Query: 49  EGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHV 108
             I   K I  WD +         F  + + D    A   I    +       + I N  
Sbjct: 96  ASISLFKSIGAWDHIFHDR--YQKFSRMLVWDSCSAA--LILFDHDNVGIDMAFIIENDN 151

Query: 109 LMESF--AEKISQDPLIHCFDALANEIQIGEEEVT----------ILLSTGQQIVGQFLI 156
           +  S   ++  S+   +   + +A  I     E            I L+ G       LI
Sbjct: 152 IQCSLYNSQLDSESDNVTVIN-MAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLI 210

Query: 157 GSDGRNSSVRRQMGYGENKWSYPQKALV--LNFQHSMPHNGRCVEFHKSLGTITQIPLRE 214
           G+DG NS VR+        W+Y Q A+V  L  +     NG   +     G I  +PL +
Sbjct: 211 GADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSD 270

Query: 215 NFSSLVWIMESQEA--------------------------DFYYKLPV------------ 236
             SSLVW    + A                           +                  
Sbjct: 271 TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESL 330

Query: 237 -NEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQG 295
            N   R   Q   P + ++   +  Q F L    +  +   RV L+G+AAH + P+ GQG
Sbjct: 331 LNTSKRLANQQYPPSVFEVGDKSRAQ-FPLGFGHADEYVTDRVALIGDAAHRVHPLAGQG 389

Query: 296 LNLSMRDVIIL-----------LNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNR 344
           +NL   DV IL           L+L   EH+        Y   R       +   D  ++
Sbjct: 390 VNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEP------YERERLQHNYVLLGAVDKLHK 443

Query: 345 SLFSRYPLLQILRAGTFHLLKRVTPLRHQVMR 376
              +  P + +LR     L   + P+++ +M 
Sbjct: 444 LYATSAPPVVLLRTFGLQLTNALAPVKNFIMV 475


>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
           flavoprotein monooxygenases [Energy production and
           conversion, General function prediction only].
          Length = 420

 Score = 80.8 bits (199), Expect = 6e-16
 Identities = 74/381 (19%), Positives = 128/381 (33%), Gaps = 36/381 (9%)

Query: 5   DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTM----LMGEGIDFLKEINVW 60
            V+I+G G+ G   A+   +KG    ++      +D R       L   G   LK I + 
Sbjct: 4   KVVIVGGGIVGLATALALHRKGIDVVVLE---SREDPRGEGTSINLALNGWRALKAIGLK 60

Query: 61  DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
           + +++   P+    L+        +        E  L     N+   +L E+      + 
Sbjct: 61  EQIREQGIPLGGRVLIHGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKF 120

Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180
                  +   EI+   +++ + LS G  + G  LIG DG  S VR+ +G+ E ++   Q
Sbjct: 121 HSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQ 180

Query: 181 KALVLNF-QHSMPHNGR-----CVEFHKSLGTITQIPLRENFS-SLVWIMESQEADFYYK 233
               L F  + +P   +         H        +        SL     +   +    
Sbjct: 181 AYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL 240

Query: 234 LP-VNEIARRLEQYLYPVIGKIE----VVTDVQIFQLSGMISHCFGKKRVVLVGEAAHAL 288
                E+     +    +I        V T +       +IS       VVL+G+AAHA+
Sbjct: 241 KKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAM 300

Query: 289 PPICGQGLNLSMRDVIILLNLFQS----------------EHMSFRAIGNR-YHAMRRGD 331
            P  GQG N +  D ++L                      E  +   +    Y   R   
Sbjct: 301 TPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRR 360

Query: 332 IIKRIVGTDLFNRSLFSRYPL 352
           +++  V   L      S  PL
Sbjct: 361 LLRLKVDAYLVGILPQSFGPL 381


>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
           and conversion].
          Length = 396

 Score = 69.8 bits (170), Expect = 1e-12
 Identities = 69/370 (18%), Positives = 134/370 (36%), Gaps = 37/370 (10%)

Query: 1   MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDF--LKEIN 58
           M  +DV+I+G+G AGS AA   AK G    ++   S           G G+    L+E+ 
Sbjct: 1   MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE---PGAKPCCGGGLSPRALEELI 57

Query: 59  VWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118
             DF ++I   V+  R+    +++                  GY +      +  AE+  
Sbjct: 58  -PDFDEEIERKVTGARIYFPGEKVAIEVP----------VGEGYIVDRAKFDKWLAERAE 106

Query: 119 QDPLIHCFDALANEIQIGEEEVTILLSTGQQIV-GQFLIGSDGRNSSVRRQMGYGENKWS 177
           +             +   ++ V + +  G   V  + +I +DG NS++ R++G    K  
Sbjct: 107 EAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLG---LKDR 163

Query: 178 YPQKALVLNFQH-SMPHNGRCVEFH------KSLGTITQIPLRENFSSLVWIMESQEADF 230
            P+   +   +   +P +G   EF          G     PL +  +++   +     D 
Sbjct: 164 KPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLL---DD 220

Query: 231 YYKLPVNEIARRLEQYLYP---VIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHA 287
               P  E+  R +++      ++G   +          G  S       V+LVG+AA  
Sbjct: 221 PSLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGF 280

Query: 288 LPPICGQGLNLSMRDVII----LLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFN 343
           + P+ G+G+  +++   +    +    +    +              + +K +    L  
Sbjct: 281 VNPLTGEGIRYAIKSGKLAAEAIAEALEGGEEALAEYERLLRKSLAREDLKSLRLLKLLL 340

Query: 344 RSLFSRYPLL 353
           R L    P L
Sbjct: 341 RLLDRTLPAL 350


>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain.  This domain is
           involved in FAD binding in a number of enzymes.
          Length = 349

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 65/334 (19%), Positives = 112/334 (33%), Gaps = 60/334 (17%)

Query: 5   DVIIIGSGLAGSVAAIGAAKKGFLTALVS--------PRSFLQDLRTTMLMGEGIDFLKE 56
           DV+I+G G AG + A+  A+ G    LV         PR+   + RT       ++ L++
Sbjct: 3   DVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRT-------MELLRQ 55

Query: 57  INVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDA-FGY----NIPNH---- 107
             + D +  +AE         +                  LD           P      
Sbjct: 56  AGLEDRI--LAEGAPHEG---MGLAFYNTSRR-----RADLDFLTSPPRVTVYPQTELEP 105

Query: 108 VLMESFAEKISQDPLIHCFDA-LANEIQIGEEEVTILL----STGQQIVGQFLIGSDGRN 162
           +L E  AE          F   + +  Q G+    ++          +  ++L+G DG  
Sbjct: 106 ILREH-AEARGAQVR---FGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGR 161

Query: 163 SSVRRQMGY---GENKW---SYPQKALVLNFQHSMP-HNGRCVEFHKSLGTITQIPLREN 215
           S VR+Q+G    G       S        +    +       + +          P R  
Sbjct: 162 SPVRKQLGIEFEGFEGVPFGSLDVLFDAPDLSDPVERAFVHYLIYAPHSRGFMVGPWRSA 221

Query: 216 FSSLVWIMESQEADFYYKL---PVNEIARRLEQYLYPVIGKIEVVTD---VQIFQLSGMI 269
             S  ++       +  ++   P        +Q L   +G      +     I+ +   +
Sbjct: 222 GRSRYYVQ----VPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSIWGVRSRV 277

Query: 270 SHCFGKKRVVLVGEAAHALPPICGQGLNLSMRDV 303
           +  + K RV L G+AAH  PP  GQGLN  ++D 
Sbjct: 278 ATRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDA 311


>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
          dihydrolipoamide dehydrogenase (E3) component, and
          related enzymes [Energy production and conversion].
          Length = 454

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
          M  +DV++IG+G AG VAAI AA+ G   ALV     L
Sbjct: 2  MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39


>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain.  This family
          includes members that bind FAD. This family includes
          the flavoprotein subunits from succinate and fumarate
          dehydrogenase, aspartate oxidase and the alpha subunit
          of adenylylsulphate reductase.
          Length = 401

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALVS 33
          DV++IGSGLAG  AA+ AA+ G   A+V 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29


>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. 
          Length = 391

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          DVI+IG G AG  AA+ AA+ G    L+
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLI 28


>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
          flavoprotein subunit [Energy production and
          conversion].
          Length = 562

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALVS 33
          FDV++IG G AG  AAI AA+ G   AL+S
Sbjct: 7  FDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36


>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
          production and conversion].
          Length = 506

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 2  NHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
          N +DV++IG G  G VAAI AA+ G  TA V  R  L
Sbjct: 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74


>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 520

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 4   FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRT 43
           +DV+++G G AG+ AAI AA+KG  T LV+ R   Q L T
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDT 251


>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport
           and metabolism].
          Length = 509

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 69/328 (21%), Positives = 137/328 (41%), Gaps = 34/328 (10%)

Query: 5   DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGE-----GIDFLKEINV 59
           DVII+G+G+AGS  A   AK G     V  R   +  R   ++GE     G   L ++ +
Sbjct: 47  DVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSEPDR---IVGELLQPGGYLALSKLGL 102

Query: 60  WDFLQDI-AEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKIS 118
            D ++ I A+ V+ + +     + +  P   +       D  G +  N   ++   +K +
Sbjct: 103 EDCVEGIDAQRVTGYAIFK-DGKEVDLP---YPLKNFPSDPSGRSFHNGRFVQRLRKKAA 158

Query: 119 QDPLIHCFDALANEIQIGEEE-----VTILLSTGQQI--VGQFLIGSDGRNSSVRRQMGY 171
             P +   +     +   EEE     VT     G+++       +  DG  S++RR +  
Sbjct: 159 SLPNVRLEEGTVKSLL--EEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD 216

Query: 172 GENKW--SYPQKALVLNFQHSMPHNGRCVEFHKSLGTITQIP------LRENFSSLVWIM 223
            + +   SY    ++ N +   P++G  +    S   + QI       L +     +  +
Sbjct: 217 PKVEEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSI 276

Query: 224 ESQEADFYYKLPVNEIARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGE 283
            + E   Y K     +A ++ + L     +     +++    S M +    KK V+L+G+
Sbjct: 277 ANGEMATYMK---ESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGD 333

Query: 284 AAHALPPICGQGLNLSMRDVIILLNLFQ 311
           A +   P+ G G+ +++ D+++L  L +
Sbjct: 334 AFNMRHPLTGGGMTVALSDIVLLRRLLK 361


>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
           acid transport and metabolism].
          Length = 421

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 3   HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR-------SFLQDLRTTMLMGEGIDFLK 55
           +FDV IIG GLAG    +   + G   A+V+         S   DL   +  G+ +  + 
Sbjct: 2   NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALHFSSGSLDLLGRLPDGQAVTDIH 61

Query: 56  EINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNH 107
           +    D L+  A P   + LV     L  A  A     E GL   G    NH
Sbjct: 62  D--GLDALRQQA-PAHPYSLVGAQKVLDLAQQAEALLDESGLQLQGSVEANH 110


>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
          cell division [Cell division and chromosome
          partitioning].
          Length = 621

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
             +DVI+IG G AG  AA+ AA+ G  T L+
Sbjct: 2  PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33


>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
          prediction only].
          Length = 408

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 19/32 (59%), Positives = 21/32 (65%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          M  FDVIIIG G AG +AAI AAK G    L+
Sbjct: 1  MERFDVIIIGGGPAGLMAAISAAKAGRRVLLI 32


>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
          modification, protein turnover, chaperones].
          Length = 305

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          M  +DVIIIG G AG  AAI AA+ G    L+
Sbjct: 1  MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32


>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
          [Secondary metabolites biosynthesis, transport, and
          catabolism].
          Length = 487

 Score = 37.4 bits (86), Expect = 0.008
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          M  +DV++IG+GL G  AA   A+ G    ++
Sbjct: 1  MPMYDVVVIGAGLNGLAAAALLARAGLKVTVL 32


>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
           [Energy production and conversion].
          Length = 680

 Score = 36.5 bits (84), Expect = 0.013
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 4   FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDL--RTTMLMGEGIDFLKEINVWD 61
           FDV+IIG G  G+  A+ AA +G  TALV    F      ++T L+  G+ +L E  + +
Sbjct: 68  FDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYL-EKAISN 126

Query: 62  FLQDIAEPVSSFRLV 76
              D  +    +RLV
Sbjct: 127 L--DYEQ----YRLV 135


>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
          acid transport and metabolism].
          Length = 387

 Score = 36.0 bits (82), Expect = 0.017
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
              DV+IIG G+ G  AA   A++G    ++
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAERGADVTVL 33


>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
          biogenesis, outer membrane].
          Length = 374

 Score = 35.6 bits (82), Expect = 0.022
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL-------QDLRTTMLM---GEGIDF 53
          FD +I+G+GL+G+V A  AA+ G    +V  R+ +        D +T +L+   G  I  
Sbjct: 2  FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH 61

Query: 54 LKEINVWDFLQDIAE 68
               VWD++    E
Sbjct: 62 TDNKRVWDYVNQFTE 76


>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
          involved in translation [Translation, ribosomal
          structure and biogenesis].
          Length = 679

 Score = 35.3 bits (81), Expect = 0.026
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 3  HFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPR 35
           +DV++IG G AG  AA  AA+ G  T L++  
Sbjct: 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60


>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. 
          Length = 405

 Score = 35.2 bits (82), Expect = 0.032
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          +DVI+IG G AG +AAI AAK+G    L+
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLI 29


>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
           polyferredoxins [Energy production and conversion].
          Length = 622

 Score = 33.8 bits (77), Expect = 0.073
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 5   DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
            V++IG G+AG  AA+  A  GF   LV     +
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159


>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
          [Amino acid transport and metabolism].
          Length = 542

 Score = 33.9 bits (77), Expect = 0.074
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKG 26
             +D +I+GSG AGSV A   +  G
Sbjct: 5  KMEYDYVIVGSGSAGSVLAARLSDAG 30


>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase.  This family
          includes various FAD dependent oxidoreductases:
          Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
          Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
          oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
          Length = 309

 Score = 33.9 bits (78), Expect = 0.083
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
          DV++IG G+ G   A   A++G    L+     
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDL 33


>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
          production and conversion].
          Length = 532

 Score = 33.0 bits (75), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
          M  FDVI+IG G+ G+  A  AA +G   ALV     
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDL 46


>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
          Length = 518

 Score = 32.5 bits (74), Expect = 0.21
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 2  NHFDVIIIGSGLAGSVAAIGAAKK 25
           H DV+IIGSGLAG  AA+  A  
Sbjct: 6  EHPDVLIIGSGLAGLTAALSLAPS 29


>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
          prediction only].
          Length = 552

 Score = 32.3 bits (73), Expect = 0.22
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
              DVI++G+GLAG VAA   A  G    ++
Sbjct: 3  GLTADVIVVGAGLAGLVAAAELADAGKRVLIL 34


>gnl|CDD|31399 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in
          translation [Translation, ribosomal structure and
          biogenesis].
          Length = 439

 Score = 32.1 bits (73), Expect = 0.26
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 1  MNHFDVIIIGSGLAGSVAAIGAAKKG 26
          M    + +IG+GLAGS AA   AK+G
Sbjct: 1  MMQQPINVIGAGLAGSEAAWQIAKRG 26


>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
          [Coenzyme metabolism].
          Length = 262

 Score = 31.0 bits (70), Expect = 0.60
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL--------QDLRTTMLMGEGIDFLKE 56
          DVII+G+G +G  AA   AK G   A+   +                 ++  E  + L E
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDE 91

Query: 57 INV 59
            +
Sbjct: 92 FGI 94


>gnl|CDD|34560 COG4952, COG4952, Predicted sugar isomerase [Cell envelope
           biogenesis, outer membrane].
          Length = 430

 Score = 30.4 bits (68), Expect = 0.94
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 19/122 (15%)

Query: 188 QHSMPHNGRCVEFHKSLGTI---------TQIPLRENFSSLVWIMESQEADFYYKLPVNE 238
           + ++ HN  CVE  K+LG+          +  P + NF+             Y  LP + 
Sbjct: 155 RQAIEHNLECVEIGKALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYAALPADW 214

Query: 239 IARRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNL 298
                 +   P        T VQ +  + +I+   G++   LV    HA         N+
Sbjct: 215 RLFTEHKMFEPAF----YSTVVQDWGTNYLIAEELGERAFCLVDLGHHA------PNTNI 264

Query: 299 SM 300
            M
Sbjct: 265 EM 266


>gnl|CDD|37242 KOG2031, KOG2031, KOG2031, Tyrosyl-DNA phosphodiesterase
           [Replication, recombination and repair].
          Length = 519

 Score = 30.4 bits (68), Expect = 0.96
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 32  VSPRSFLQDLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFH 91
           VSP  F QDL         I++L        L++    +       I  R I +    F 
Sbjct: 224 VSPTGFKQDL---------IEYLNSYR-LPQLKEWIASLKKVDFSAINVRFIGSTPGKFQ 273

Query: 92  SSEIGLDAFGYNIPNHVLMESFAEKISQD-PLIHCFDALA 130
            S   L ++G+N    +L E  A    +  P++    ++ 
Sbjct: 274 GSG--LLSWGHNKLKKILKEHAASPYLERTPVVGQSSSIG 311


>gnl|CDD|39606 KOG4405, KOG4405, KOG4405, GDP dissociation inhibitor [Signal
          transduction mechanisms, Intracellular trafficking,
          secretion, and vesicular transport].
          Length = 547

 Score = 30.0 bits (67), Expect = 1.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSF 37
          FDV++IG+GL  S+ A   ++ G     +    +
Sbjct: 9  FDVVVIGTGLPESILAAACSRSGSSVLHLDSNEY 42


>gnl|CDD|145231 pfam01946, Thi4, Thi4 family.  This family includes a putative
          thiamine biosynthetic enzyme.
          Length = 229

 Score = 29.3 bits (66), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALV 32
          DV+I+G+G +G  AA   AKKG   A++
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAII 46


>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
          function prediction only].
          Length = 399

 Score = 28.8 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 4  FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
           DVII+G+G+ G   A   AK+G    L+
Sbjct: 8  RDVIIVGAGVFGLSTAYELAKRGDKILLL 36


>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
          [Amino acid transport and metabolism].
          Length = 389

 Score = 28.7 bits (64), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFL 54
           +++IG+G  GSV A   A+ G     ++ RS  +  R   L+G  ++ L
Sbjct: 3  KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEAL 52


>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
          [Inorganic ion transport and metabolism].
          Length = 443

 Score = 28.5 bits (63), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 1  MNHFDVIIIGSGLAGSVAAI 20
            H DV IIG+G +G  AA 
Sbjct: 6  ATHTDVAIIGAGQSGLAAAY 25


>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
          dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
          family) [General function prediction only].
          Length = 623

 Score = 28.8 bits (64), Expect = 3.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 2  NHFDVIIIGSGLAGSVAA 19
          + +D I++G G AG V A
Sbjct: 56 SSYDYIVVGGGTAGCVLA 73


>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
          biosynthesis, transport and catabolism].
          Length = 501

 Score = 28.0 bits (62), Expect = 4.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 4  FDVIIIGSGLAGSVAA 19
            VI+IG+GLAG  AA
Sbjct: 16 KKVIVIGAGLAGLSAA 31


>gnl|CDD|33157 COG3349, COG3349, Uncharacterized conserved protein [Function
          unknown].
          Length = 485

 Score = 28.0 bits (62), Expect = 5.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 6  VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFL 38
          V I G+GLAG  AA   A  G+   L   R  L
Sbjct: 3  VAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35


>gnl|CDD|31424 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
          metabolism].
          Length = 450

 Score = 27.6 bits (61), Expect = 6.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGF 27
          DVII+G+GLAG  AA    K G+
Sbjct: 9  DVIIVGAGLAGLSAAYELKKAGY 31


>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
            and metabolism].
          Length = 2142

 Score = 27.6 bits (61), Expect = 6.2
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 19/74 (25%)

Query: 4    FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS------------------FLQDLRTTM 45
              V IIGSG AG  AA    K G  T  V  RS                  F+   R  +
Sbjct: 1786 KRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844

Query: 46   LMGEGIDFLKEINV 59
            L  EGI F+    +
Sbjct: 1845 LEQEGIRFVTNTEI 1858


>gnl|CDD|33187 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
          [General function prediction only].
          Length = 331

 Score = 27.6 bits (61), Expect = 6.3
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 5  DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
           + I+G+G+AG  AA    + G     V  + 
Sbjct: 3  SIAIVGAGIAGLAAAYALREAG-REVTVFEKG 33


>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase
          [Posttranslational modification, protein turnover,
          chaperones].
          Length = 322

 Score = 27.3 bits (60), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 3  HFDVIIIGSGLAGSVAAIGAAKK 25
          + +V+IIGSG A   AAI AA+ 
Sbjct: 8  NENVVIIGSGPAAHTAAIYAARA 30


>gnl|CDD|31790 COG1602, COG1602, Uncharacterized conserved protein [Function
           unknown].
          Length = 402

 Score = 26.8 bits (59), Expect = 9.5
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 40  DLRTTMLMGEGIDFLKEINVWDFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSE 94
            LR++++ G     + +    D L++I E   S R VD+  +L   P       E
Sbjct: 92  KLRSSLVRGSRRVRVDDAREPDLLEEIQEAALSDRPVDVEAQLRRKPSGRLSFDE 146


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.141    0.416 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,788,521
Number of extensions: 261402
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 61
Length of query: 384
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 288
Effective length of database: 4,189,273
Effective search space: 1206510624
Effective search space used: 1206510624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)