BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl
hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
(384 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW
Sbjct: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
Query: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD
Sbjct: 61 DFLQDIAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLMESFAEKISQD 120
Query: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180
PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ
Sbjct: 121 PLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWSYPQ 180
Query: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240
KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA
Sbjct: 181 KALVLNFQHSMPHNGRCVEFHKSLGTITQIPLRENFSSLVWIMESQEADFYYKLPVNEIA 240
Query: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300
RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM
Sbjct: 241 RRLEQYLYPVIGKIEVVTDVQIFQLSGMISHCFGKKRVVLVGEAAHALPPICGQGLNLSM 300
Query: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360
RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT
Sbjct: 301 RDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFSRYPLLQILRAGT 360
Query: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384
FHLLKRVTPLRHQVMRQSLFLRDL
Sbjct: 361 FHLLKRVTPLRHQVMRQSLFLRDL 384
>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 380
Score = 49.7 bits (117), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 141/376 (37%), Gaps = 35/376 (9%)
Query: 7 IIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID-FLKEINVWDFLQD 65
+IIG+G++G A +G + ++ + L D + + LK I + D L+D
Sbjct: 1 MIIGAGISGLTLAASLGHRGIQSCVLEKKDQLSDSGFGIQISPNASRILKRIGILDQLED 60
Query: 66 IAEPVSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYN--------IPNHVLMESFAEKI 117
I ++ D + + + S + N + H L + I
Sbjct: 61 I--------WIEPEDFVFRSGSTLKELSRFSCKNYSRNNWGGIYGVVKRHTLQKILLNHI 112
Query: 118 SQDPLIHCFDALANEIQIGEEEVTILLSTGQQIVGQFLIGSDGRNSSVRRQMGYGENKWS 177
PL L I + T + Q L+G+DG NS++R + +S
Sbjct: 113 QTQPLAR----LHLSTHITHPDCTQISKINNQ-KPDLLVGADGLNSNIRHYIDTQPITFS 167
Query: 178 YPQKALVLNFQHSMPH--NGRCVE-FHKSLGTITQIPLRE-NFSSLVWIMESQEADFYYK 233
L Q++ P + + V F + PLRE N ++V++
Sbjct: 168 GDVVLRCLIPQNNAPEFIDFQSVNIFFGPDSHLVTYPLREDNTINMVFVSSKHTLKDISF 227
Query: 234 LPVNEI-----ARRLEQYLYPVIGKIEVVTDVQIFQL-SGMISHCFGKKRVVLVGEAAHA 287
L +EI + L + +I I + D ++ L H KK VL+G+AAH
Sbjct: 228 LKRSEIHKEWFVKHLTNWHQEIIQLILQINDTHLYPLFECECKHWHNKKNAVLIGDAAHT 287
Query: 288 LPPICGQGLNLSMRDVIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLF 347
L P QG N+++ D L L + + A + Y + R +KRI N+ LF
Sbjct: 288 LLPFAAQGANMAIEDAYALSYLLGKK--TIPAAISAYQKV-RAVRVKRIRYRTKLNQLLF 344
Query: 348 SRYPLLQILRAGTFHL 363
+ + R L
Sbjct: 345 HMHRPASLFRNAGLRL 360
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 36.2 bits (82), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALV 32
+D+I+IGSG AG VAAI AA+ GF A+V
Sbjct: 5 YDIILIGSGPAGYVAAIRAAQLGFKVAIV 33
>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 321
Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD---LRTTMLMGEGIDFLKEINVWD 61
DVI++G G + A+ AK +V RS L+ L+ + + IDFL + V D
Sbjct: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207
Query: 62 FLQDIAEP-----VSSFRL 75
+ I EP VS RL
Sbjct: 208 VIGSIPEPPLFPSVSGVRL 226
Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID 52
++IIGSG AG AAI AA+ +++ DL +++ E I+
Sbjct: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAG----SDLGGQLMITESIE 50
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 26.9 bits (58), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 4 FDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
+DVI+IG G AG AA AAK G TAL++ ++
Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGASTALITHKT 38
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 26.6 bits (57), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 1 MNHFDVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVW 60
M D+ IIG G GS ++ KGF A+ + L D+ + G + N+
Sbjct: 1 MKQADIGIIGLGSMGSNLSLNILDKGFRLAVYNKDFELTDVFIKKISGLSQKVIVTKNLE 60
Query: 61 DFLQDIAEPVSSFRLV---DITDRLITAPDAIFHSSEIGLDA 99
++ + +P +V D D+LI + +I LD
Sbjct: 61 QMVEAVCKPRKILMMVTDGDPVDQLIDKLKPLLSPEDILLDG 102
>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
[Candidatus Liberibacter asiaticus str. psy62]
Length = 354
Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 8 IIGSGLAGSVAAIGAAKKGFLTALVSPRS 36
IIG G + ++ AA+ GF T ++ P S
Sbjct: 8 IIGGGQLARMLSMSAARLGFCTVILDPDS 36
>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 160
Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 303 VIILLNLFQSEHMSFRAIGNRYHAMRRGDIIKRIVGTDLFNRSLFS 348
V IL+ F S + ++ + + A+ R + R+VG + N ++FS
Sbjct: 14 VSILVFCFVSHFVQRKSFADVHEALERYKKVARVVGPHIPNSNVFS 59
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 198 VEFHKSL-GTITQIPLRENFSSLV 220
+E H++L G + Q PLREN S +
Sbjct: 542 IEKHETLEGFVLQAPLRENLGSFI 565
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 23.9 bits (50), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 4 FDVIIIGSGLAGSVAAIGAAK 24
+DV ++G G AG AI AA+
Sbjct: 3 YDVAVVGGGPAGYACAIKAAQ 23
>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 837
Score = 23.5 bits (49), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 23 AKKGFLTALVSPRSFLQDLRTTMLMGEGIDFLKEINVWDFL-QDIAEPVSSFRLVDITDR 81
K+ L A+ SPR DL L +D+L N+ L Q + S+ R+ + R
Sbjct: 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALR 175
Query: 82 LI 83
LI
Sbjct: 176 LI 177
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 23.5 bits (49), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 70 VSSFRLVDITDRLITAPDAIFHSSEIGLDAFGYNIPNHVLM 110
++ F LVD D L+ A IFH + D+F NH++M
Sbjct: 598 IARFDLVDRRDALVEAFKYIFH-ERVDNDSF-----NHLIM 632
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,475
Number of Sequences: 1233
Number of extensions: 10164
Number of successful extensions: 42
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 15
length of query: 384
length of database: 328,796
effective HSP length: 76
effective length of query: 308
effective length of database: 235,088
effective search space: 72407104
effective search space used: 72407104
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)