HHsearch alignment for GI: 254780843 and conserved domain: PRK09528
>PRK09528 lacY galactoside permease; Reviewed.
Probab=99.98 E-value=5.5e-28 Score=156.60 Aligned_cols=382 Identities=13% Similarity=0.064 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH--HHHHHHHC-CHHC
Q ss_conf 99999987389989999-99809998999999999999999999999999985262899999999--76432100-0000
Q gi|254780843|r 21 FLFGGITSLNSILVPKL-QNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLL--IMSLGCIL-FTAT 96 (420)
Q Consensus 21 f~~g~~~~~~~~~~p~l-~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~--~~~i~~ll-~~~a 96 (420)
T Consensus 18 f~yF~~~g~~~pf~~vwL~~~~Gls~~qIGli~s~~~~~~l~~~p~~G~lsDk~g~~k~ll~~~~~~~~~~~~~f~~vf~ 97 (418)
T PRK09528 18 FFFFFIWSSYFSFFPIWLHDINGLSKTDTGIIFSAISLFALLFQPLYGVISDKLGLKKYLLWIISGLLVLFGPFFIYVFA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999676789899999999999999999998889997420241278999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 1320246789998877756788876531000012303578--87766443110000345478888864123420467765
Q gi|254780843|r 97 IEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTA--VSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSML 174 (420)
Q Consensus 97 ~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 174 (420)
T Consensus 98 pll~--~~~~lg~~~~~i~~~~~~~a~~pl~ds~~~~~s~~~~~~YG~iRlwGSiGfavas~~~G~l~~~~~~~~-f-~~ 173 (418)
T PRK09528 98 PLLQ--YNILVGAIVGGIYLGFGFNAGAGAIEAYIEKVSRNSGFEYGRARMFGSLGWALCAFFAGILFNINPQIN-F-WL 173 (418)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH-H-HH
T ss_conf 9999--999999999999999987346638999999998775897624789999999999999889876173289-9-99
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 55557789888642001121100134555543210123101233210001111222111111100011100013556778
Q gi|254780843|r 175 ADTMKDYQTDTARVISQMYLVLAIILFLATWLCWMQRNSFADHKRNHISFLKTLDILANPRFTMGAVCIFLYVGAEVAIG 254 (420)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (420)
T Consensus 174 ~s~~~li~~~ll~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~f~l~~~~~~~~~~~~d 241 (418)
T PRK09528 174 GSGCALILAVLLFF------------AKPDAPSTATVANAVGANPSAVSLKDALALFKLPKFWFLVLYVIGVACIYDVFD 241 (418)
T ss_pred HHHHHHHHHHHHHH------------HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998------------467653221000000146688779999998367499999999999999999999
Q ss_pred HHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH-HH
Q ss_conf 999987-5420122210124688899998764310011111100000000012455554567689962233689999-99
Q gi|254780843|r 255 SIMANY-LMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFISGWS-LI 332 (420)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 332 (420)
T Consensus 242 ~~f~~f~~~~~~~~~~g~~~~G~l~s~gv~~Ei~~m~~~~~l~~r~g~k~~Llla~~~~~lRw~~~~~~~~~~~i~~~ql 321 (418)
T PRK09528 242 QQFPNFFASFFATHEQGTRVFGYLNSFQVFLEALIMFFAPLIINRIGAKNALLLAGTIMAVRIIGSAFATNALEVSILKL 321 (418)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 88889999997701667136769999999999999999999998608099999999999999998630013899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999963015656999-99--9999999999999999999961237999999999999999999853
Q gi|254780843|r 333 AVGLFNSIMFPTIFSLASASLEDQASGGS-GI--ICTTISGGVIIPLGVGYLVDIASLRDAMFVPAVCYIIIAIYGIYCC 409 (420)
Q Consensus 333 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~g~~i~p~i~G~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 409 (420)
T Consensus 322 LHa~tf~l~~~a~~~yI~~~~~~~l~aT~~~v~~~~~~gl~~~i~s~~~G~lyD~~G~~~~y~~~g~i~~~~tlis~f~l 401 (418)
T PRK09528 322 LHAFEVPFLLVGIFKYITSNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQDTYLVLGLIVLGFTLISAFTL 401 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999985888889999999999999999999742068899984457999999999999999999973
Q ss_pred HHHHCCCCC
Q ss_conf 111020127
Q gi|254780843|r 410 YKENNFEQN 418 (420)
Q Consensus 410 ~~~~~~~~~ 418 (420)
T Consensus 402 ~~~~~~~~~ 410 (418)
T PRK09528 402 SGKRPLSGL 410 (418)
T ss_pred CCCCCCCCC
T ss_conf 578867532