HHsearch alignment for GI: 254780843 and conserved domain: TIGR00710
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=99.42 E-value=3e-11 Score=72.72 Aligned_cols=174 Identities=11% Similarity=0.028 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 13556778999987542012221012468889999876431001111110000000001245555456768996223368
Q gi|254780843|r 247 VGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTWILSRFSAEKTLCAFATTACSLVILSSYTTGFI 326 (420)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (420)
T Consensus 15 ~L~pl~~DMYLPa~p~i~~~L~~~as~vQ~tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~Sl~~~~~~ni~ 94 (400)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAKDLSVSASLVQLTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALSSLGLALSNNIE 94 (400)
T ss_pred HHCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63202112521207898986287866899999999999999898652333203672388999999999999999985199
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-9999999999999999996301-565--6999999999999999999999--999961237999999999999
Q gi|254780843|r 327 SGWSLI-AVGLFNSIMFPTIFSLASASLE-DQA--SGGSGIICTTISGGVIIPLGVG--YLVDIASLRDAMFVPAVCYII 400 (420)
Q Consensus 327 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~i~p~i~G--~l~d~~g~~~~~~~~~~~~~~ 400 (420)
T Consensus 95 ~L~~lRF~Qa~gasA~~V~~~AlvRD~Y~G~~e~s~~~s~l~~~~~~~P~~aP~~Ggai~~~~~l~WhaIF~~L~l~~~~ 174 (400)
T TIGR00710 95 TLLVLRFLQAFGASAALVISQALVRDIYPGREELSKIYSILMLVLALAPAVAPLIGGAIYVLVFLSWHAIFAVLSLIGIL 174 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998999999988850203257899999999999999987888886999999852099999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999985311102012797
Q gi|254780843|r 401 IAIYGIYCCYKENNFEQNTP 420 (420)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~P 420 (420)
T Consensus 175 l~a~~f~~~pET~~~~~r~P 194 (400)
T TIGR00710 175 LSALIFFLLPETLPKEKRIP 194 (400)
T ss_pred HHHHHHHHCCCCCCHHCCCC
T ss_conf 99999985512274010374