HHsearch alignment for GI: 254780843 and conserved domain: TIGR00711
>TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638 This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=100.00 E-value=1.1e-34 Score=190.22 Aligned_cols=365 Identities=13% Similarity=0.081 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998738998999999809998999999999999999999999999985262899999999764321000
Q gi|254780843|r 14 IYIFILFFLFGGITSLNSILVPKLQNSFSLTYLQAMLVEAIFFSCYFFFSIPAGMFIQRYGYIKGICTGLLIMSLGCILF 93 (420)
Q Consensus 14 i~i~~~ff~~g~~~~~~~~~~p~l~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~i~~ll~ 93 (420)
T Consensus 5 ~~l~~g~FMa~LD~Tiv~va~p~~~~~lg~s~~~~~Wv~TsY~~A~a~~IPl~gwLa~R~G~r~lFl~~~~~Ft~~S~~C 84 (501)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTLAGDLGASLSQVQWVITSYMLANAIVIPLTGWLAKRFGTRKLFLISTLAFTLGSLLC 84 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999987763211441002323146788899999889999987084478999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 00013202467899988777567888765310000123035788776644311000034547888886412342046776
Q gi|254780843|r 94 TATIEITTFKVFLIALCILAIGVVIIQVALNPFISLLGDPNTAVSRLTFAQFFNSLGTAIFPYIGSVLMLGNLASPNTSM 173 (420)
Q Consensus 94 ~~a~~~~~~~~~~~~~~i~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 173 (420)
T Consensus 85 g~A---~nl~~lIifR~~QG~~gG~l~Pl~~~~l~~~~PP~~Rg~~~~~~Gl~v~~AP~~GP~LGGwI~e~~~Wrw~F~~ 161 (501)
T TIGR00711 85 GVA---NNLELLIIFRVIQGFGGGLLIPLSFSLLLNIYPPEKRGLAMAIWGLTVLVAPALGPTLGGWIIENYEWRWIFYI 161 (501)
T ss_pred HHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHCCCCHHEEEH
T ss_conf 985---20899999999988622048999999999747912158356421066874202353104688732622220212
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHH------------HHHH-HCCCCCCHH----------------------H-
Q ss_conf 555557789888642001121100134555------------5432-101231012----------------------3-
Q gi|254780843|r 174 LADTMKDYQTDTARVISQMYLVLAIILFLA------------TWLC-WMQRNSFAD----------------------H- 217 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~-~~~~~~~~~----------------------~- 217 (420)
T Consensus 162 NvPiG~~v~~~a~~~l~~d~~~~~~~~~~D~~G~~L~~~g~~~Ll~~ls~g~~~GW~~~~~il~~~i~~~~~~~~fv~~s 241 (501)
T TIGR00711 162 NVPIGIIVVVVALFILPEDREKEKASKNLDFLGLLLLSVGLGSLLYVLSEGQEEGWFDSNLILILSIVGLVAIIAFVVRS 241 (501)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 57899999999999844666661666311278899999999999987521566889986315699999999999999978
Q ss_pred HHHHCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-C
Q ss_conf 3210001111222111111100-0111000135567789999875420122210124688899998764310011111-1
Q gi|254780843|r 218 KRNHISFLKTLDILANPRFTMG-AVCIFLYVGAEVAIGSIMANYLMRHDTLHLDGISAGQHTAIYWGSAMIGRFIGTW-I 295 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 295 (420)
T Consensus 242 el~~~nP~~D~~~F~~~~Ft~~f~~~~~~~~~~lyg~~~LLP~~Lq~~--~~~~~~~~Gl~~~P~gl~~~l~sPIaG~~~ 319 (501)
T TIGR00711 242 ELTDDNPLVDLRLFKYRNFTIGFCVYSLLLGLGLYGAVYLLPLYLQQV--LGYTALQAGLHILPVGLAPLLSSPIAGRML 319 (501)
T ss_pred HHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 741468800443402025788999999999999999999999999986--279978999999889999999707999998
Q ss_pred CCHHHCCCHHHHHHHHHHHHHHHHHHC-----CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHH
Q ss_conf 000000000124555545676899622-----33689999-99999999999999999999630156-56999999-999
Q gi|254780843|r 296 LSRFSAEKTLCAFATTACSLVILSSYT-----TGFISGWS-LIAVGLFNSIMFPTIFSLASASLEDQ-ASGGSGII-CTT 367 (420)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~ 367 (420)
T Consensus 320 ~~k~~~R~l~~ig~~~~a~~~y~~~~~~~~~~~f~~~~~~G~~i~G~g~~~~fmP~~~~al~~Lp~~~~~~gs~L~n~~R 399 (501)
T TIGR00711 320 GDKIDPRLLVTIGLILYAVGFYLRAFTLTPDTDFLAIALPGQFIRGFGMGCFFMPLTTIALSKLPAEKVARGSSLSNFLR 399 (501)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 41468068999999999999988852215578618888677999999999999875577761252357622689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780843|r 368 ISGGVIIPLGVGYLVD 383 (420)
Q Consensus 368 ~~g~~i~p~i~G~l~d 383 (420)
T Consensus 400 ~~gGSiGTal~t~~~~ 415 (501)
T TIGR00711 400 QLGGSIGTALITTILT 415 (501)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9888999999999998